Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Reverse (-)

833278 .. 837091

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAACGCGTGGTTGATGATGGATCAATGAATGATAATTCATCACTTGAAGATATCGTTGTTGATCCAGTTGTGCGAGGCCTTATTACTGACTGGGATGCCATGGAGGACCTATTGCATCATGTTCTATATACTGGACTTGGATGGGAAATGGGCAACGAAGGGCAGATATTATTTACCGATCCACTTTGTACTCCCAAGGCTGTCAGAGAGCAGTTGGTGCAACTGATGTTTGAAACATTTAACATTTCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGACGCATCTCGGGATGCACTGTTGATATTGGCCATGGAAAAATAGATATTGCACCAGTCGTTGAAGGTGCTGTTCAGCACATTGCCTCAAGGAGGTTTGAAATTGGAGGTACTGATTTGACGAAATTACTTGCTGAAGAGCTTGGGAAATCTAATCCTCTAGTTAATATCAAGATGTCTGATATTGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGAAGATGAACTTGCTTATGAAAAGACCAAAAATTCATGCCAGATAGAGCAGCATACCCTTCCTGATGGACAGGTTATTACGATTGGAAGAGAAAGATATACTGTTGGTGAGGCTCTATTCCAACCATCCATATTGGGTTTAGAAGCTCATGGAATTGTTGAGCAGCTTGTTCGTTGTATTTCAACAGTATCGTCTGATAATCACCGGCAATTGCTAGAAAATACGGTACTGTGTGGTGGCACTGCTTCTATGACTGGTTTTGAAGAAAGGTTTCAGAAAGAAGCTGGTCTATGCTCATCTGCTGTTCGTCCTGCTTTAATTAAGCCTCCGGAGTATATGCCAGAGAATTTATCAATGTATTCAGCGTGGGTGGGAGGTGCCATACTCGCCAAAGTTGTGTTCCCACAGAATCAACATGTAACAAAAGCAGACTACGATGAAACTGGACCTTCTGTTGTTCATCGGAAATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

331

Amino Acids

36.35

Weight (kDa)

4.89

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	893
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	844
AclWI	GGATC	3 cut(s)	31, 59, 176
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	2 cut(s)	547, 862
AcuI	CTGAAG	2 cut(s)	453, 537
AfaI	GTAC	3 cut(s)	193, 409, 744
AfiI	CCNNNNNNNGG	1 cut(s)	390
AflIII	ACRYGT	2 cut(s)	7, 931
AgsI	TTSAA	6 cut(s)	50, 236, 362, 398, 699, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AluBI	AGCT	4 cut(s)	439, 662, 682, 800
AluI	AGCT	4 cut(s)	439, 662, 682, 800
AlwI	GGATC	3 cut(s)	31, 59, 176
Ama87I	CYCGRG	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	2 cut(s)	79, 328
ApeKI	GCWGC	2 cut(s)	565, 679
ApoI	RAATTY	2 cut(s)	547, 862
Asp700I	GAANNNNTTC	2 cut(s)	786, 986
AspS9I	GGNCC	2 cut(s)	109, 962
AsuHPI	GGTGA	2 cut(s)	635, 710
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	109, 962
BalI	TGGCCA	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	893
BbvI	GCAGC	2 cut(s)	577, 691
BccI	CCATC	4 cut(s)	14, 138, 575, 649
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BfaI	CTAG	2 cut(s)	458, 731
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	566, 680
BlsI	GCNGC	2 cut(s)	567, 681
Bme18I	GGWCC	2 cut(s)	109, 962
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	109, 962
BmiI	GGNNCC	1 cut(s)	895
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	5 cut(s)	88, 127, 272, 302, 312
BmuI	ACTGGG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	370
BsaJI	CCNNGG	3 cut(s)	102, 198, 331
BsaWI	WCCGGW	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	720
Bse1I	ACTGG	6 cut(s)	68, 98, 139, 353, 775, 964
Bse3DI	GCAATG	1 cut(s)	378
BseAI	TCCGGA	1 cut(s)	844
BseDI	CCNNGG	3 cut(s)	102, 198, 331
BseGI	GGATG	4 cut(s)	103, 149, 317, 641
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	6 cut(s)	68, 98, 139, 353, 775, 964
BseXI	GCAGC	2 cut(s)	577, 691
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	81, 330
BshNI	GGYRCC	1 cut(s)	893
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	721, 845
BslI	CCNNNNNNNGG	1 cut(s)	390
BsnI	GGCC	2 cut(s)	81, 330
BsoBI	CYCGRG	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	3 cut(s)	23, 64, 181
Bsp19I	CCATGG	2 cut(s)	102, 331
BspANI	GGCC	2 cut(s)	81, 330
BspEI	TCCGGA	1 cut(s)	844
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	895
BspPI	GGATC	3 cut(s)	31, 59, 176
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	893
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	720
BsrI	ACTGG	6 cut(s)	68, 98, 139, 353, 775, 964
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	3 cut(s)	102, 198, 331
BssMI	GATC	3 cut(s)	23, 64, 181
BssT1I	CCWWGG	3 cut(s)	102, 198, 331
Bst4CI	ACNGT	5 cut(s)	319, 619, 703, 742, 747
Bst6I	CTCTTC	2 cut(s)	429, 598
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	273
BstDSI	CCRYGG	2 cut(s)	102, 331
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	4 cut(s)	103, 149, 317, 641
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	26, 67, 184
BstMBI	GATC	3 cut(s)	23, 64, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 902
BstNSI	RCATGY	1 cut(s)	935
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	577, 691
BsuRI	GGCC	2 cut(s)	81, 330
BtgI	CCRYGG	2 cut(s)	102, 331
BtsCI	GGATG	4 cut(s)	103, 149, 317, 641
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	315, 756
Cac8I	GCNNGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	720
Cfr13I	GGNCC	2 cut(s)	109, 962
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	192, 408, 743
CviAII	CATG	7 cut(s)	103, 122, 332, 507, 552, 665, 932
CviQI	GTAC	3 cut(s)	192, 408, 743
DpnI	GATC	3 cut(s)	25, 66, 183
DpnII	GATC	3 cut(s)	23, 64, 181
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	429, 598
EarI	CTCTTC	2 cut(s)	429, 598
Eco130I	CCWWGG	3 cut(s)	102, 198, 331
Eco147I	AGGCCT	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	109, 962
Eco57I	CTGAAG	2 cut(s)	453, 537
Eco88I	CYCGRG	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	102, 198, 331
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	3 cut(s)	102, 198, 331
FaeI	CATG	7 cut(s)	106, 125, 335, 510, 555, 668, 935
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	7 cut(s)	102, 121, 331, 506, 551, 664, 931
Fnu4HI	GCNGC	2 cut(s)	566, 680
FokI	GGATG	4 cut(s)	110, 156, 324, 628
Fsp4HI	GCNGC	2 cut(s)	566, 680
FspBI	CTAG	2 cut(s)	458, 731
GluI	GCNGC	2 cut(s)	566, 680
HaeIII	GGCC	2 cut(s)	81, 330
HapII	CCGG	2 cut(s)	721, 845
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	7 cut(s)	106, 125, 335, 510, 555, 668, 935
HinfI	GANTC	1 cut(s)	925
HpaII	CCGG	2 cut(s)	721, 845
HphI	GGTGA	2 cut(s)	635, 710
Hpy188I	TCNGA	7 cut(s)	209, 268, 478, 712, 792, 981, 992
Hpy188III	TCNNGA	4 cut(s)	309, 469, 578, 845
HpyAV	CCTTC	4 cut(s)	155, 356, 584, 975
HpyCH4III	ACNGT	5 cut(s)	319, 619, 703, 742, 747
HpyCH4V	TGCA	5 cut(s)	118, 223, 263, 315, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 902
Hsp92II	CATG	7 cut(s)	106, 125, 335, 510, 555, 668, 935
Kpn2I	TCCGGA	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	23, 64, 181
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	577, 691
LweI	GCATC	5 cut(s)	88, 127, 272, 302, 312
MaeI	CTAG	2 cut(s)	458, 731
MaeIII	GTNAC	2 cut(s)	282, 934
MalI	GATC	3 cut(s)	25, 66, 183
MboI	GATC	3 cut(s)	23, 64, 181
MboII	GAAGA	5 cut(s)	62, 446, 530, 615, 791
MfeI	CAATTG	1 cut(s)	725
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	8 cut(s)	37, 399, 422, 547, 669, 725, 834, 862
MluI	ACGCGT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	9 cut(s)	71, 100, 384, 394, 398, 465, 619, 852, 884
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	844
MroXI	GAANNNNTTC	2 cut(s)	786, 986
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	4 cut(s)	243, 462, 833, 837
Msp20I	TGGCCA	1 cut(s)	330
MspI	CCGG	2 cut(s)	721, 845
MunI	CAATTG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	220, 902
NcoI	CCATGG	2 cut(s)	102, 331
NdeII	GATC	3 cut(s)	23, 64, 181
NlaIII	CATG	7 cut(s)	106, 125, 335, 510, 555, 668, 935
NlaIV	GGNNCC	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	935
PacI	TTAATTAA	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	81
PciI	ACATGT	1 cut(s)	931
PciSI	GCTCTTC	1 cut(s)	429
PdmI	GAANNNNTTC	2 cut(s)	786, 986
PfeI	GAWTC	1 cut(s)	925
PkrI	GCNGC	2 cut(s)	567, 681
PpuMI	RGGWCCY	1 cut(s)	109
PscI	ACATGT	1 cut(s)	931
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	895
PspPI	GGNCC	2 cut(s)	109, 962
PspPPI	RGGWCCY	1 cut(s)	109
RsaI	GTAC	3 cut(s)	193, 409, 744
RsaNI	GTAC	3 cut(s)	192, 408, 743
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	243, 462, 833, 837
SatI	GCNGC	2 cut(s)	566, 680
Sau3AI	GATC	3 cut(s)	23, 64, 181
Sau96I	GGNCC	2 cut(s)	109, 962
SfaNI	GCATC	5 cut(s)	88, 127, 272, 302, 312
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	109, 962
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	8 cut(s)	37, 399, 422, 547, 669, 725, 834, 862
SseBI	AGGCCT	1 cut(s)	81
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	2 cut(s)	458, 731
StuI	AGGCCT	1 cut(s)	81
StyI	CCWWGG	3 cut(s)	102, 198, 331
TaaI	ACNGT	5 cut(s)	319, 619, 703, 742, 747
TasI	AATT	8 cut(s)	37, 399, 422, 547, 669, 725, 834, 862
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	925
Tru1I	TTAA	4 cut(s)	243, 462, 833, 837
Tru9I	TTAA	4 cut(s)	243, 462, 833, 837
TscAI	CASTG	2 cut(s)	322, 763
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	2 cut(s)	565, 679
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	9 cut(s)	17, 30, 44, 495, 537, 540, 549, 965, 969
TspRI	CASTG	2 cut(s)	322, 763
VpaK11BI	GGWCC	2 cut(s)	109, 962
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	2 cut(s)	547, 862
XceI	RCATGY	1 cut(s)	935
XmnI	GAANNNNTTC	2 cut(s)	786, 986
XspI	CTAG	2 cut(s)	458, 731
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.