Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Reverse (-)

2611560 .. 2618690

Gene Structure 7131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG015400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGGCCGCCGTGGTCGATGCTGGCTCCAAGCTCCTCAAAGCGGGTCCCGCCGTTCCCGATCAAGCTCCTGCCATGATAATTCCAAACCAAATGAAGCGCATGGCTGAGGATGGATCAATGAATGATAGTTCATCATTTGAAGATATAATTGTTGATCCAGTTGTGCGTGGTCTTATTAAAGATTGGGATGCCATGGAAGATTTGTTGCATCATATTTTATACACTGGCCTCGGATGGGAAATGGGCAATGAAGGACAGATATTATTTACTGATCCACTCTGTACTCCCAAGGCTGTCAGGGAACAGTTGGTTCAACTGATGTTTGAAACGTTTAATATATCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGACGTATCTCGGGATGCACTGTCGATATTGGCCATGGGAAGATAGATATTGCGCCAGTAATTGAAGGGGCTGTTCAGCACATTGCCTCAAGAAGGTTTGAAATTGGAGGTATTGATTTGACGAAGTTACTCGCTGAAGAGCTTGGGAAGTCCAATCCTCTGGTGACTTTAAAGATGTCTGATGTTGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGATGATGAACTTGCTTATGAAAAGATTAAAAGATCATGCCAGGCGGAACAACACACTCTTCCCGATGGACAGGTCATCACTATTGGAAGAGAAAGGTATACCGTTGGTGAGGCTTTATTCCAACCATCTATATTGGGTTTAGAGGCTCATGGAATTGTGGAGCAGCTTGTTCGTTGTATTTCAACAGTATCGTCTGATAATCACCGCCAGTTGCTGGAAAATACTGTACTGTGTGGCGGCACTGCTTCTATGACTGGTTTTGAAGAAAGGTTCCACAAAGAAGCTGGTTTATGCTCATCTGCTGTCCGCCCTGCTTTAATTAAGGTAATTTATTTTGTGGGTTTATTACACTGTGCACCCTCCAAGCATAAGTTATTTTCCCTATTGTATCCGTTTGAACAAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

339

Amino Acids

37.16

Weight (kDa)

5.12

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 298	4e-54	Actin
FtsA	PF14450	136 - 298	8.1e-06	Cell division protein FtsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccI	GTMKAC	1 cut(s)	707
AciI	CCGC	7 cut(s)	9, 44, 51, 653, 814, 846, 916
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	3 cut(s)	124, 152, 269
AcoI	YGGCCR	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	286, 837
AfiI	CCNNNNNNNGG	4 cut(s)	43, 238, 483, 823
AgsI	TTSAA	8 cut(s)	143, 317, 329, 455, 491, 792, 872, 1007
AjnI	CCWGG	1 cut(s)	648
AluBI	AGCT	5 cut(s)	34, 68, 532, 775, 893
AluI	AGCT	5 cut(s)	34, 68, 532, 775, 893
Alw21I	GWGCWC	1 cut(s)	967
Alw44I	GTGCAC	1 cut(s)	963
AlwI	GGATC	3 cut(s)	124, 152, 269
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	3 cut(s)	6, 229, 421
ApaLI	GTGCAC	1 cut(s)	963
ApeKI	GCWGC	1 cut(s)	772
AspLEI	GCGC	2 cut(s)	102, 445
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	565, 728, 803
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	967
BalI	TGGCCA	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	967
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	4 cut(s)	107, 231, 668, 742
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciT130I	CCWGG	1 cut(s)	650
BciVI	GTATCC	1 cut(s)	1008
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	1008
BisI	GCNGC	3 cut(s)	9, 773, 847
BlsI	GCNGC	3 cut(s)	10, 774, 848
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	4 cut(s)	28, 48, 49, 881
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	5 cut(s)	10, 181, 220, 365, 395
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	463
BsaJI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 238, 483, 823
Bse1I	ACTGG	5 cut(s)	161, 232, 446, 817, 868
Bse3DI	GCAATG	2 cut(s)	256, 471
BseBI	CCWGG	1 cut(s)	650
BseDI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
BseGI	GGATG	4 cut(s)	118, 196, 242, 410
BseLI	CCNNNNNNNGG	4 cut(s)	43, 238, 483, 823
BseMI	GCAATG	2 cut(s)	256, 471
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	5 cut(s)	161, 232, 446, 817, 868
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	1 cut(s)	784
BshFI	GGCC	3 cut(s)	8, 231, 423
BsiHKAI	GWGCWC	1 cut(s)	967
BsiHKCI	CYCGRG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	43, 238, 483, 823
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	8, 231, 423
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	5 cut(s)	61, 116, 157, 274, 641
Bsp19I	CCATGG	2 cut(s)	195, 424
BspACI	CCGC	7 cut(s)	9, 44, 51, 653, 814, 846, 916
BspANI	GGCC	3 cut(s)	8, 231, 423
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	28, 48, 49, 881
BspPI	GGATC	3 cut(s)	124, 152, 269
BspQI	GCTCTTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	256, 471
BsrI	ACTGG	5 cut(s)	161, 232, 446, 817, 868
BssECI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
BssMI	GATC	5 cut(s)	61, 116, 157, 274, 641
BssNAI	GTATAC	1 cut(s)	708
BssT1I	CCWWGG	3 cut(s)	195, 291, 424
Bst1107I	GTATAC	1 cut(s)	708
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 962
Bst6I	CTCTTC	3 cut(s)	522, 672, 691
BstC8I	GCNNGC	2 cut(s)	25, 366
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	3 cut(s)	12, 195, 424
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	118, 196, 242, 410
BstHHI	GCGC	2 cut(s)	102, 445
BstKTI	GATC	5 cut(s)	64, 119, 160, 277, 644
BstMBI	GATC	5 cut(s)	61, 116, 157, 274, 641
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	1 cut(s)	784
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	708
BsuI	GTATCC	1 cut(s)	1008
BsuRI	GGCC	3 cut(s)	8, 231, 423
BtgI	CCRYGG	3 cut(s)	12, 195, 424
BtsCI	GGATG	4 cut(s)	118, 196, 242, 410
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	4 cut(s)	225, 408, 849, 958
Cac8I	GCNNGC	2 cut(s)	25, 366
CaiI	CAGNNNCTG	1 cut(s)	823
CfoI	GCGC	2 cut(s)	102, 445
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	285, 836
CviAII	CATG	7 cut(s)	76, 103, 196, 425, 600, 645, 758
CviQI	GTAC	2 cut(s)	285, 836
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	63, 118, 159, 276, 643
DpnII	GATC	5 cut(s)	61, 116, 157, 274, 641
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	522, 672, 691
EarI	CTCTTC	3 cut(s)	522, 672, 691
EciI	GGCGGA	2 cut(s)	668, 905
Eco130I	CCWWGG	3 cut(s)	195, 291, 424
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	648
EcoT14I	CCWWGG	3 cut(s)	195, 291, 424
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	195, 291, 424
FaeI	CATG	7 cut(s)	79, 106, 199, 428, 603, 648, 761
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	7 cut(s)	75, 102, 195, 424, 599, 644, 757
FauI	CCCGC	2 cut(s)	37, 58
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	3 cut(s)	9, 773, 847
FokI	GGATG	4 cut(s)	125, 203, 249, 417
Fsp4HI	GCNGC	3 cut(s)	9, 773, 847
GlaI	GCGC	2 cut(s)	101, 444
GluI	GCNGC	3 cut(s)	9, 773, 847
HaeIII	GGCC	3 cut(s)	8, 231, 423
HhaI	GCGC	2 cut(s)	102, 445
Hin1II	CATG	7 cut(s)	79, 106, 199, 428, 603, 648, 761
Hin6I	GCGC	2 cut(s)	100, 443
HinP1I	GCGC	2 cut(s)	100, 443
HphI	GGTGA	3 cut(s)	565, 728, 803
Hpy166II	GTNNAC	2 cut(s)	708, 965
Hpy188I	TCNGA	4 cut(s)	236, 361, 571, 805
Hpy188III	TCNNGA	4 cut(s)	59, 402, 480, 671
Hpy8I	GTNNAC	2 cut(s)	708, 965
HpyAV	CCTTC	3 cut(s)	248, 449, 477
HpyCH4III	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 962
HpyCH4IV	ACGT	2 cut(s)	332, 394
HpyCH4V	TGCA	4 cut(s)	211, 356, 408, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	332, 394
Hsp92II	CATG	7 cut(s)	79, 106, 199, 428, 603, 648, 761
HspAI	GCGC	2 cut(s)	100, 443
KflI	GGGWCCC	1 cut(s)	47
Kzo9I	GATC	5 cut(s)	61, 116, 157, 274, 641
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	4 cut(s)	32, 39, 73, 769
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	5 cut(s)	10, 181, 220, 365, 395
MaeII	ACGT	2 cut(s)	332, 394
MaeIII	GTNAC	3 cut(s)	375, 516, 553
MalI	GATC	5 cut(s)	63, 118, 159, 276, 643
MboI	GATC	5 cut(s)	61, 116, 157, 274, 641
MboII	GAAGA	7 cut(s)	155, 212, 442, 539, 659, 708, 884
MhlI	GDGCHC	1 cut(s)	967
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	7 cut(s)	81, 150, 450, 492, 762, 927, 936
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	9 cut(s)	47, 103, 242, 487, 491, 558, 712, 745, 979
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	6 cut(s)	180, 336, 560, 636, 926, 930
Msp20I	TGGCCA	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	2 cut(s)	195, 424
NdeII	GATC	5 cut(s)	61, 116, 157, 274, 641
NlaIII	CATG	7 cut(s)	79, 106, 199, 428, 603, 648, 761
NlaIV	GGNNCC	4 cut(s)	28, 48, 49, 881
NmuCI	GTSAC	2 cut(s)	375, 553
NsiI	ATGCAT	1 cut(s)	358
PacI	TTAATTAA	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	10, 774, 848
PpuMI	RGGWCCY	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	4 cut(s)	28, 48, 49, 881
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	286, 837
RsaNI	GTAC	2 cut(s)	285, 836
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	180, 336, 560, 636, 926, 930
SatI	GCNGC	3 cut(s)	9, 773, 847
Sau3AI	GATC	5 cut(s)	61, 116, 157, 274, 641
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	5 cut(s)	10, 181, 220, 365, 395
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	7 cut(s)	81, 150, 450, 492, 762, 927, 936
SsiI	CCGC	7 cut(s)	9, 44, 51, 653, 814, 846, 916
SspI	AATATT	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	648
StyI	CCWWGG	3 cut(s)	195, 291, 424
TaaI	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 962
TaiI	ACGT	2 cut(s)	335, 397
TaqI	TCGA	2 cut(s)	18, 414
TasI	AATT	7 cut(s)	81, 150, 450, 492, 762, 927, 936
TatI	WGTACW	2 cut(s)	284, 835
TauI	GCSGC	2 cut(s)	11, 849
Tru1I	TTAA	6 cut(s)	180, 336, 560, 636, 926, 930
Tru9I	TTAA	6 cut(s)	180, 336, 560, 636, 926, 930
TscAI	CASTG	4 cut(s)	232, 415, 856, 965
TseFI	GTSAC	2 cut(s)	375, 553
TseI	GCWGC	1 cut(s)	772
Tsp45I	GTSAC	2 cut(s)	375, 553
TspDTI	ATGAA	7 cut(s)	110, 123, 137, 267, 588, 630, 642
TspGWI	ACGGA	1 cut(s)	990
TspRI	CASTG	4 cut(s)	232, 415, 856, 965
Van91I	CCANNNNNTGG	1 cut(s)	823
VneI	GTGCAC	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.