AT3G61310

DNA-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009833
Physical Location & Seq
Reverse (-)
22687610 .. 22693150
5541 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61310.1

Sequence Viewer

Length: 1065 bp
ATGGATCGAAGAGACGCAATGGCGTTATCCGGGTCGGGTTCTTACTATATCCAAAGAGGAATCCCCGGTTCTGGTCCTCCTCCTCCTCAAACTCAACCAACGTTTCACGGATCACAAGGATTTCATCATTTCACCAATTCCATCTCTCCTTTTGGGTCAAACCCAAACCCAAATCCAAACCCTGGAGGTGTCTCTACTGGATTCGTGTCTCCTCCTTTACCCGTTGACTCTTCTCCGGCTGATTCGTCAGCGGCGGCGGCGGGAGCTTTGGTTGCTCCTCCTTCAGGTGACACGTCTGTGAAGCGGAAGAGAGGACGGCCTAGAAAATATGGACAAGATGGTGGTTCTGTTTCGTTGGCATTGTCTCCTTCTATCTCCAACGTTTCCCCGAACTCTAACAAACGTGGCCGTGGAAGACCTCCTGGCTCCGGCAAGAAGCAACGGCTATCTTCCATTGGTGAAATGATGCCTTCATCAACTGGGATGAGCTTCACACCGCATGTAATCGTAGTTTCCATTGGTGAAGACATTGCTTCAAAGGTTATATCGTTCTCGCATCAAGGTCCACGAGCGATATGTGTCTTATCCGCAAGTGGTGCTGTCTCTACTGCAACTCTTCTTCAGCCAGCACCTTCTCATGGAACTATTATATACGAGGGTCTATTCGAGCTCATATCTCTCTCAACTTCTTATCTGAACACAACTGACAATGACTACCCAAACCGCACTGGAAGTCTAGCGGTCTCACTTGCTAGCCCCGATGGTCGTGTCATTGGTGGTGGAATTGGAGGTCCTCTAATAGCAGCAAGCCAAGTCCAGGTCATTGTTGGCAGCTTCATTTGGGCAATTCCGAAAGGGAAGATTAAAAAACGTGAAGAAACTTCTGAAGATGTCCAAGATACTGATGCTTTGGAAAACAACAACGATAACACAGCAGCAACGTCACCTCCTGTTCCTCAGCAAAGTCAGAACATTGTTCAGACTCCTGTAGGCATTTGGTCAACTGGTTCAAGGTCAATGGATATGCATCACCCCCATATGGACATTGATCTAATGCGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

354

Amino Acids

36.78

Weight (kDa)

8.99

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 165 - 279 7.7e-21 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 9 cut(s) 251, 254, 257, 260, 304, 497, 588, 724, 740
AclI AACGTT 2 cut(s) 101, 381
AclWI GGATC 2 cut(s) 12, 118
AcoI YGGCCR 1 cut(s) 406
AcuI CTGAAG 3 cut(s) 267, 605, 906
AfiI CCNNNNNNNGG 7 cut(s) 71, 182, 284, 428, 638, 817, 1039
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 537, 1011
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 3 cut(s) 181, 421, 816
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 4 cut(s) 266, 489, 670, 834
AluI AGCT 4 cut(s) 266, 489, 670, 834
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 6 cut(s) 6, 196, 213, 369, 607, 748
AlwI GGATC 2 cut(s) 12, 118
AoxI GGCC 2 cut(s) 317, 406
ApeKI GCWGC 3 cut(s) 803, 831, 935
AspS9I GGNCC 3 cut(s) 74, 563, 791
AsuC2I CCSGG 2 cut(s) 31, 66
AsuHPI GGTGA 6 cut(s) 124, 299, 470, 533, 936, 1022
AsuNHI GCTAGC 1 cut(s) 752
AvaII GGWCC 3 cut(s) 74, 563, 791
BanII GRGCYC 1 cut(s) 672
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 2 cut(s) 421, 531
Bbv12I GWGCWC 1 cut(s) 672
BbvCI CCTCAGC 1 cut(s) 957
BbvI GCAGC 3 cut(s) 815, 843, 947
BccI CCATC 3 cut(s) 149, 332, 755
BceAI ACGGC 3 cut(s) 332, 393, 458
BciT130I CCWGG 3 cut(s) 183, 423, 818
BcnI CCSGG 2 cut(s) 31, 66
BcoDI GTCTC 6 cut(s) 6, 196, 213, 369, 607, 748
BfaI CTAG 3 cut(s) 321, 737, 753
BfmI CTRYAG 1 cut(s) 987
BisI GCNGC 6 cut(s) 252, 255, 258, 804, 832, 936
BlsI GCNGC 6 cut(s) 253, 256, 259, 805, 833, 937
Bme1390I CCNGG 5 cut(s) 31, 66, 183, 423, 818
Bme18I GGWCC 3 cut(s) 74, 563, 791
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 74, 563, 791
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 5 cut(s) 31, 66, 183, 423, 818
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 4 cut(s) 456, 565, 895, 1036
BmtI GCTAGC 1 cut(s) 756
BmuI ACTGGG 1 cut(s) 489
BpiI GAAGAC 2 cut(s) 421, 531
BpmI CTGGAG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 957
BpuMI CCSGG 2 cut(s) 31, 66
BsaBI GATNNNNATC 1 cut(s) 1026
BsaI GGTCTC 1 cut(s) 748
BsaJI CCNNGG 3 cut(s) 64, 181, 409
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 931, 961
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 182, 284, 428, 638, 817, 1039
Bse1I ACTGG 4 cut(s) 202, 484, 733, 1009
Bse3DI GCAATG 2 cut(s) 24, 528
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 3 cut(s) 183, 423, 818
BseDI CCNNGG 3 cut(s) 64, 181, 409
BseGI GGATG 1 cut(s) 489
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 7 cut(s) 71, 182, 284, 428, 638, 817, 1039
BseMI GCAATG 2 cut(s) 24, 528
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 4 cut(s) 202, 484, 733, 1009
BseRI GAGGAG 5 cut(s) 69, 72, 75, 201, 267
BseXI GCAGC 3 cut(s) 815, 843, 947
BshFI GGCC 2 cut(s) 319, 408
BsiHKAI GWGCWC 1 cut(s) 672
BsiSI CCGG 4 cut(s) 30, 66, 236, 429
BslI CCNNNNNNNGG 7 cut(s) 71, 182, 284, 428, 638, 817, 1039
BsmAI GTCTC 6 cut(s) 6, 196, 213, 369, 607, 748
BsmBI CGTCTC 1 cut(s) 6
BsnI GGCC 2 cut(s) 319, 408
Bso31I GGTCTC 1 cut(s) 748
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 3 cut(s) 4, 110, 1048
BspACI CCGC 9 cut(s) 251, 254, 257, 260, 304, 497, 588, 724, 740
BspANI GGCC 2 cut(s) 319, 408
BspCNI CTCAG 1 cut(s) 970
BspLI GGNNCC 1 cut(s) 427
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 2 cut(s) 12, 118
BspTNI GGTCTC 1 cut(s) 748
BsrDI GCAATG 2 cut(s) 24, 528
BsrI ACTGG 4 cut(s) 202, 484, 733, 1009
BssECI CCNNGG 3 cut(s) 64, 181, 409
BssMI GATC 3 cut(s) 4, 110, 1048
BssSI CACGAG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 3 cut(s) 183, 423, 818
Bst6I CTCTTC 4 cut(s) 4, 235, 302, 621
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 627, 754, 808
BstDEI CTNAG 1 cut(s) 957
BstDSI CCRYGG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 489
BstKTI GATC 3 cut(s) 7, 113, 1051
BstMAI GTCTC 6 cut(s) 6, 196, 213, 369, 607, 748
BstMBI GATC 3 cut(s) 4, 110, 1048
BstMWI GCNNNNNNNGC 4 cut(s) 257, 263, 272, 596
BstNI CCWGG 3 cut(s) 183, 423, 818
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 5 cut(s) 29, 64, 181, 421, 816
BstSFI CTRYAG 1 cut(s) 987
BstV1I GCAGC 3 cut(s) 815, 843, 947
BstV2I GAAGAC 2 cut(s) 421, 531
BsuRI GGCC 2 cut(s) 319, 408
BtgI CCRYGG 1 cut(s) 409
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 3 cut(s) 627, 754, 808
Cfr13I GGNCC 3 cut(s) 74, 563, 791
CseI GACGC 1 cut(s) 23
CviAII CATG 2 cut(s) 500, 638
DdeI CTNAG 1 cut(s) 957
DpnI GATC 3 cut(s) 6, 112, 1050
DpnII GATC 3 cut(s) 4, 110, 1048
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 4 cut(s) 4, 235, 302, 621
EarI CTCTTC 4 cut(s) 4, 235, 302, 621
Ecl136II GAGCTC 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 748
Eco47I GGWCC 3 cut(s) 74, 563, 791
Eco53kI GAGCTC 1 cut(s) 670
Eco57I CTGAAG 3 cut(s) 267, 605, 906
EcoICRI GAGCTC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 3 cut(s) 181, 421, 816
EcoT22I ATGCAT 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 2 cut(s) 503, 641
FatI CATG 2 cut(s) 499, 637
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 1038
Fnu4HI GCNGC 6 cut(s) 252, 255, 258, 804, 832, 936
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 6 cut(s) 252, 255, 258, 804, 832, 936
FspBI CTAG 3 cut(s) 321, 737, 753
GluI GCNGC 6 cut(s) 252, 255, 258, 804, 832, 936
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 2 cut(s) 319, 408
HapII CCGG 4 cut(s) 30, 66, 236, 429
HgaI GACGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 503, 641
HincII GTYRAC 2 cut(s) 226, 1002
HindII GTYRAC 2 cut(s) 226, 1002
HinfI GANTC 5 cut(s) 60, 201, 227, 242, 982
HpaII CCGG 4 cut(s) 30, 66, 236, 429
HphI GGTGA 6 cut(s) 124, 299, 470, 533, 936, 1022
Hpy166II GTNNAC 3 cut(s) 226, 566, 1002
Hpy188I TCNGA 5 cut(s) 696, 852, 886, 969, 981
Hpy8I GTNNAC 3 cut(s) 226, 566, 1002
HpyAV CCTTC 4 cut(s) 291, 378, 480, 642
HpyCH4IV ACGT 6 cut(s) 101, 293, 381, 403, 871, 941
HpyCH4V TGCA 2 cut(s) 611, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 263, 272, 596
HpyF3I CTNAG 1 cut(s) 957
HpySE526I ACGT 6 cut(s) 101, 293, 381, 403, 871, 941
Hsp92II CATG 2 cut(s) 503, 641
Kzo9I GATC 3 cut(s) 4, 110, 1048
LmnI GCTCC 3 cut(s) 263, 280, 431
Lsp1109I GCAGC 3 cut(s) 815, 843, 947
LweI GCATC 4 cut(s) 456, 565, 895, 1036
MaeI CTAG 3 cut(s) 321, 737, 753
MaeII ACGT 6 cut(s) 101, 293, 381, 403, 871, 941
MaeIII GTNAC 2 cut(s) 287, 942
MalI GATC 3 cut(s) 6, 112, 1050
MboI GATC 3 cut(s) 4, 110, 1048
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 3 cut(s) 136, 783, 846
MlyI GAGTC 2 cut(s) 221, 976
MmeI TCCRAC 1 cut(s) 402
Mph1103I ATGCAT 1 cut(s) 1029
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 4 cut(s) 30, 66, 236, 429
MspR9I CCNGG 5 cut(s) 31, 66, 183, 423, 818
MvaI CCWGG 3 cut(s) 183, 423, 818
MwoI GCNNNNNNNGC 4 cut(s) 257, 263, 272, 596
NciI CCSGG 2 cut(s) 31, 66
NdeI CATATG 1 cut(s) 1038
NdeII GATC 3 cut(s) 4, 110, 1048
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 2 cut(s) 503, 641
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 287, 942
NsiI ATGCAT 1 cut(s) 1029
NspI RCATGY 1 cut(s) 503
OliI CACNNNNGTG 1 cut(s) 296
PfeI GAWTC 3 cut(s) 60, 201, 242
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 6 cut(s) 253, 256, 259, 805, 833, 937
PleI GAGTC 2 cut(s) 221, 976
PpsI GAGTC 2 cut(s) 221, 976
PpuMI RGGWCCY 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 672
Psp1406I AACGTT 2 cut(s) 101, 381
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 181, 421, 816
PspGI CCWGG 3 cut(s) 181, 421, 816
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 3 cut(s) 74, 563, 791
PspPPI RGGWCCY 1 cut(s) 791
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 6 cut(s) 252, 255, 258, 804, 832, 936
Sau3AI GATC 3 cut(s) 4, 110, 1048
Sau96I GGNCC 3 cut(s) 74, 563, 791
SchI GAGTC 2 cut(s) 221, 976
ScrFI CCNGG 5 cut(s) 31, 66, 183, 423, 818
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 4 cut(s) 456, 565, 895, 1036
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 3 cut(s) 74, 563, 791
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 3 cut(s) 136, 783, 846
SsiI CCGC 9 cut(s) 251, 254, 257, 260, 304, 497, 588, 724, 740
SspMI CTAG 3 cut(s) 321, 737, 753
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 5 cut(s) 29, 64, 181, 421, 816
TaiI ACGT 6 cut(s) 104, 296, 384, 406, 874, 944
TaqI TCGA 2 cut(s) 7, 666
TasI AATT 3 cut(s) 136, 783, 846
TauI GCSGC 3 cut(s) 254, 257, 260
TfiI GAWTC 3 cut(s) 60, 201, 242
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 2 cut(s) 287, 942
TseI GCWGC 3 cut(s) 803, 831, 935
Tsp45I GTSAC 2 cut(s) 287, 942
TspDTI ATGAA 3 cut(s) 113, 462, 826
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 733
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 3 cut(s) 74, 563, 791
XagI CCTNNNNNAGG 1 cut(s) 282
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XspI CTAG 3 cut(s) 321, 737, 753
Zsp2I ATGCAT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.