Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006632.1

Orthogroup ID

OG0009833

Physical Location & Seq

Genomic Coordinates Reverse (-)

7721 .. 10897

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006632.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgtctgggtcagcctcttattacacaccgagatcaataacggggtctggaacacagtctgggttacttggatcaccaggcattcatcccttatctaatccaaatgcagtatttcagtccaatatgggggccagtacgattgggtcaacattaccagtagacccttcttcggctatttcacctcatggtgtcaatgtgggtgcatcgtctgtggcgccacaaggtgaatctgtgaaaaggaaaagaggaagacctcgaaaatatggacctgatgggactgtttcattggcattatctccgtcatcatcctccaatcctgggatggtagcttcaagcccaaagcgaggtagagggcggccaccagggtctgggaagaagcaccaattagcgtctcttggtgaaatgctgtctagttcagctggaatgggtttcactccacatattatcaccatcgcaatgggagaagacattgcaacaaaaataatggcattttcacagcaaggcccaagagctctctgcgtcttatcagccaatggtgctgtctctactgtgactcttcgtcagccctccacttctggtggcacagtcacatatgagggacggtttgagataatttgtctatcaggctcttacttgctcactgaaagtggtggctccagaaatcgaactggtggtcttagtgtctcccttgctagtcctgatggtcgtgttgttggtggaggagtaggaggaatgctcattgctgctggtcctgtacaggtgatagtgggtagcttcatatggggtggttcaaagacaaagaacaagaaaaaagaagctatagaaggtgtcacagacttcgaccaacagacagttgacaattcagttgcatttaatagcatgccacccgatcaaaattttactcaagggtcatcgttgggtgtgtggccatcaccacgaccattggatatgcgtaacagtcatgttgacattgatttgatgcgaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

329

Amino Acids

33.66

Weight (kDa)

9.86

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61310
fragaria_vesca	FvH4_7g13980 FvH4_7g13980
malus_domestica	MD01G1056200.v1.1 MD07G1139600.v1.1
prunus_persica	Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1
pyrus_communis	pycom01g08170 pycom07g13730
rosa_chinensis	RchiOBHm_Chr1g0354631
rosa_laevigata	RLG00000028194
rosa_multiflora	Rmu_sc0006632.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300890
rosa_rugosa	Rorug01G0243500
rosa_samantha	Rh1AG254700 Rh1BG225300 Rh1CG237700 Rh1DG253300
rosa_wichuraiana	Rw1G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	2 cut(s)	356, 926
AcsI	RAATTY	1 cut(s)	895
AcyI	GRCGYC	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	136, 756
AfiI	CCNNNNNNNGG	5 cut(s)	126, 169, 318, 344, 368
AgsI	TTSAA	2 cut(s)	333, 792
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	3 cut(s)	76, 316, 361
AluBI	AGCT	5 cut(s)	329, 419, 512, 774, 818
AluI	AGCT	5 cut(s)	329, 419, 512, 774, 818
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	396, 547, 688
AlwI	GGATC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	4 cut(s)	129, 356, 502, 926
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	895
ArsI	GACNNNNNNTTYG	2 cut(s)	658, 690
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	4 cut(s)	129, 266, 503, 749
AsuHPI	GGTGA	7 cut(s)	66, 171, 236, 410, 439, 772, 924
AvaII	GGWCC	2 cut(s)	266, 749
BalI	TGGCCA	1 cut(s)	928
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	2 cut(s)	256, 471
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	5 cut(s)	266, 316, 458, 695, 937
BciT130I	CCWGG	3 cut(s)	78, 318, 363
BcoDI	GTCTC	3 cut(s)	396, 547, 688
BfaI	CTAG	2 cut(s)	411, 693
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	356, 744
BlsI	GCNGC	2 cut(s)	357, 745
Bme1390I	CCNGG	3 cut(s)	78, 318, 363
Bme18I	GGWCC	2 cut(s)	266, 749
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	4 cut(s)	129, 266, 503, 749
BmiI	GGNNCC	3 cut(s)	130, 216, 655
BmrFI	CCNGG	3 cut(s)	78, 318, 363
BmsI	GCATC	2 cut(s)	212, 969
BpiI	GAAGAC	2 cut(s)	256, 471
BplI	GAGNNNNNCTC	2 cut(s)	720, 752
BpmI	CTGGAG	1 cut(s)	640
BpuEI	CTTGAG	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	317, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 169, 318, 344, 368
Bse1I	ACTGG	3 cut(s)	132, 155, 673
Bse3DI	GCAATG	3 cut(s)	462, 468, 738
BseBI	CCWGG	3 cut(s)	78, 318, 363
BseDI	CCNNGG	2 cut(s)	317, 362
BseGI	GGATG	3 cut(s)	85, 305, 327
BseLI	CCNNNNNNNGG	5 cut(s)	126, 169, 318, 344, 368
BseMI	GCAATG	3 cut(s)	462, 468, 738
BseNI	ACTGG	3 cut(s)	132, 155, 673
BseRI	GAGGAG	1 cut(s)	735
BseXI	GCAGC	1 cut(s)	730
BshFI	GGCC	4 cut(s)	131, 358, 504, 928
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	289, 612
BslI	CCNNNNNNNGG	5 cut(s)	126, 169, 318, 344, 368
BsmAI	GTCTC	3 cut(s)	396, 547, 688
BsmBI	CGTCTC	1 cut(s)	396
BsmFI	GGGAC	2 cut(s)	289, 612
BsmI	GAATGC	2 cut(s)	81, 738
BsnI	GGCC	4 cut(s)	131, 358, 504, 928
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	32, 71, 889
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	4 cut(s)	131, 358, 504, 928
BspLI	GGNNCC	3 cut(s)	130, 216, 655
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	214
BsrDI	GCAATG	3 cut(s)	462, 468, 738
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	132, 155, 673
BssECI	CCNNGG	2 cut(s)	317, 362
BssMI	GATC	3 cut(s)	32, 71, 889
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	3 cut(s)	78, 318, 363
Bst4CI	ACNGT	7 cut(s)	57, 280, 550, 586, 603, 853, 959
Bst6I	CTCTTC	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	754
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	85, 305, 327
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	35, 74, 892
BstMAI	GTCTC	3 cut(s)	396, 547, 688
BstMBI	GATC	3 cut(s)	32, 71, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	3 cut(s)	78, 318, 363
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	3 cut(s)	76, 316, 361
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	2 cut(s)	256, 471
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	131, 358, 504, 928
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	85, 305, 327
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	881
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	129, 266, 503, 749
CseI	GACGC	2 cut(s)	378, 508
Csp6I	GTAC	2 cut(s)	135, 755
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	3 cut(s)	185, 880, 962
CviQI	GTAC	2 cut(s)	135, 755
DdeI	CTNAG	1 cut(s)	677
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	34, 73, 891
DpnII	GATC	3 cut(s)	32, 71, 889
DraIII	CACNNNGTG	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	2 cut(s)	356, 926
Eam1104I	CTCTTC	1 cut(s)	561
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	266, 749
Eco53kI	GAGCTC	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	512
EcoRII	CCWGG	3 cut(s)	76, 316, 361
EcoT38I	GRGCYC	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	3 cut(s)	188, 883, 965
FaqI	GGGAC	2 cut(s)	289, 612
FatI	CATG	3 cut(s)	184, 879, 961
FauNDI	CATATG	2 cut(s)	592, 779
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	356, 744
FokI	GGATG	3 cut(s)	72, 292, 334
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	356, 744
FspBI	CTAG	2 cut(s)	411, 693
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	356, 744
GsuI	CTGGAG	1 cut(s)	640
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	4 cut(s)	131, 358, 504, 928
HgaI	GACGC	2 cut(s)	378, 508
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	188, 883, 965
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	3 cut(s)	147, 856, 967
HindII	GTYRAC	3 cut(s)	147, 856, 967
HinfI	GANTC	2 cut(s)	227, 553
HphI	GGTGA	7 cut(s)	66, 171, 236, 410, 439, 772, 924
Hpy166II	GTNNAC	4 cut(s)	147, 160, 856, 967
Hpy188III	TCNNGA	3 cut(s)	48, 657, 698
Hpy8I	GTNNAC	4 cut(s)	147, 160, 856, 967
HpyAV	CCTTC	2 cut(s)	174, 818
HpyCH4III	ACNGT	7 cut(s)	57, 280, 550, 586, 603, 853, 959
HpyCH4V	TGCA	4 cut(s)	107, 203, 473, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	1 cut(s)	677
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	188, 883, 965
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	32, 71, 889
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	2 cut(s)	212, 969
MaeI	CTAG	2 cut(s)	411, 693
MaeIII	GTNAC	5 cut(s)	63, 550, 586, 829, 953
MalI	GATC	3 cut(s)	34, 73, 891
MboI	GATC	3 cut(s)	32, 71, 889
MboII	GAAGA	5 cut(s)	159, 261, 385, 476, 548
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	928
MluCI	AATT	4 cut(s)	383, 612, 859, 895
MluNI	TGGCCA	1 cut(s)	928
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	547
Mox20I	TGGCCA	1 cut(s)	928
MscI	TGGCCA	1 cut(s)	928
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	928
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	78, 318, 363
Mva1269I	GAATGC	2 cut(s)	81, 738
MvaI	CCWGG	3 cut(s)	78, 318, 363
MwoI	GCNNNNNNNGC	1 cut(s)	536
NarI	GGCGCC	1 cut(s)	215
NdeI	CATATG	2 cut(s)	592, 779
NdeII	GATC	3 cut(s)	32, 71, 889
NlaIII	CATG	3 cut(s)	188, 883, 965
NlaIV	GGNNCC	3 cut(s)	130, 216, 655
NmuCI	GTSAC	3 cut(s)	550, 586, 829
NspI	RCATGY	1 cut(s)	883
PaeI	GCATGC	1 cut(s)	883
PctI	GAATGC	2 cut(s)	81, 738
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	357, 745
PleI	GAGTC	1 cut(s)	547
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	76, 316, 361
PspGI	CCWGG	3 cut(s)	76, 316, 361
PspN4I	GGNNCC	3 cut(s)	130, 216, 655
PspPI	GGNCC	4 cut(s)	129, 266, 503, 749
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	136, 756
RsaNI	GTAC	2 cut(s)	135, 755
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	2 cut(s)	356, 744
Sau3AI	GATC	3 cut(s)	32, 71, 889
Sau96I	GGNCC	4 cut(s)	129, 266, 503, 749
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	3 cut(s)	78, 318, 363
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	2 cut(s)	212, 969
SfcI	CTRYAG	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	216
SinI	GGWCC	2 cut(s)	266, 749
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	4 cut(s)	383, 612, 859, 895
SsiI	CCGC	1 cut(s)	355
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	411, 693
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	76, 316, 361
TaaI	ACNGT	7 cut(s)	57, 280, 550, 586, 603, 853, 959
TaqI	TCGA	3 cut(s)	256, 664, 840
TasI	AATT	4 cut(s)	383, 612, 859, 895
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	3 cut(s)	550, 586, 829
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	3 cut(s)	550, 586, 829
TspDTI	ATGAA	3 cut(s)	74, 273, 766
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	646
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	266, 749
XapI	RAATTY	1 cut(s)	895
XceI	RCATGY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	411, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.