Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009833

Physical Location & Seq

Genomic Coordinates Forward (+)

15605428 .. 15608259

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATCGGAGGGACCCTATGGCATTGTCGGGGTCAGCCTCTTACTTTACGTCTAGAGGAATAACTGGTTCCGGAACACAATCTGGGATACATGGATCACCAGGCATTCATCCCTTATCTAATACAAATATAGCATTTCAATCCAATATTGAAGGAAGTAACATTGGATCAACATTGCCGATAGGGCCTTCTTCGACTATTTCACAGCATGTTGTCAATCTGGGTGCACCATCCGCGGTTCCACCAGGCGAATCTTTAAAAAGGAAAAGAGGAAGACCTCGAAAATATGGACCTGATGGGACTGTTTCATTGGCATTGTCTCCTGCAGCATCTGCTAATCCTGGTACAGTATCATCAAGCCCAAAACGGGGTAGAGGGCGGCCACCAGGGTCTGGGAAGAAGCAACAATTAGTGTCTCATGGCGGATTGCTGTCTGGTTCGGCTGGGATGGGATTTACTCCACATATTATCAGCATTGCAGTGGGAGAAGATGTTGCAACAAAAATAATGGCGTTTTCGCAGCAGGGGCCAAGAGCTGTGTGCATCTTGTCAGCCAATGGTGCTGTTTCTACTGTGACGCTACGTCAGCCCTCAACTTCTGGTGGTACAGTCACATATGAGGGACGGTTTGAGATAATATGTCTCTCAGGCTCTTACTTGCTAACTGAAATTGGTGGTTCCCGAAACCGAAGTGGTGGTCTGAGCGTTTCCCTTGCTAGTCCTGATGGCCGTGTCATTGGTGGAGGAGTAGGAGGGATGCTTATTGCGGCAACCCCTGTTCAGGTGATAGTAGGTAGCTTTATATGGGGTGGTCCGAAGACAAAGAACAAGAAAAGGGAAGCCGTAGAAGGTGTCACAGACTTGGAACATGAGACAGTTGACAATTCGGTTGCACTAAACAGCATTCAACCAGATCAGAGTCTTAGCCAAAGTGCTTCATTGGCCGCGTGGCAGGCATCGCGGCCACTGGATATGCGTAACAGTCATGTTGACATTGATTTGATGCGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

338

Amino Acids

34.52

Weight (kDa)

9.95

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61310
fragaria_vesca	FvH4_7g13980 FvH4_7g13980
malus_domestica	MD01G1056200.v1.1 MD07G1139600.v1.1
prunus_persica	Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1
pyrus_communis	pycom01g08170 pycom07g13730
rosa_chinensis	RchiOBHm_Chr1g0354631
rosa_laevigata	RLG00000028194
rosa_multiflora	Rmu_sc0006632.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300890
rosa_rugosa	Rorug01G0243500
rosa_samantha	Rh1AG254700 Rh1BG225300 Rh1CG237700 Rh1DG253300
rosa_wichuraiana	Rw1G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccII	CGCG	3 cut(s)	236, 947, 961
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	7 cut(s)	234, 236, 379, 423, 767, 945, 961
AclWI	GGATC	3 cut(s)	12, 103, 175
AcoI	YGGCCR	4 cut(s)	380, 727, 942, 962
AfaI	GTAC	2 cut(s)	346, 607
AfiI	CCNNNNNNNGG	4 cut(s)	367, 368, 392, 781
AgsI	TTSAA	3 cut(s)	140, 152, 908
AhdI	GACNNNNNGTC	1 cut(s)	582
AjnI	CCWGG	4 cut(s)	100, 244, 340, 385
AluBI	AGCT	2 cut(s)	536, 798
AluI	AGCT	2 cut(s)	536, 798
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	4 cut(s)	324, 420, 647, 866
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	12, 103, 175
AlwNI	CAGNNNCTG	2 cut(s)	332, 392
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	6 cut(s)	185, 380, 527, 727, 942, 962
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	326, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
AspS9I	GGNCC	5 cut(s)	13, 185, 290, 527, 812
AsuHPI	GGTGA	2 cut(s)	90, 796
AvaII	GGWCC	3 cut(s)	13, 290, 812
BaeGI	GKGCMC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	280, 824
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	338, 532
BccI	CCATC	4 cut(s)	238, 290, 442, 719
BceAI	ACGGC	2 cut(s)	714, 827
BciT130I	CCWGG	4 cut(s)	102, 246, 342, 387
BciVI	GTATCC	1 cut(s)	81
BcoDI	GTCTC	4 cut(s)	324, 420, 647, 866
BfaI	CTAG	2 cut(s)	54, 717
BfmI	CTRYAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	184
BisI	GCNGC	6 cut(s)	327, 380, 521, 768, 945, 962
BlsI	GCNGC	6 cut(s)	328, 381, 522, 769, 946, 963
Bme1390I	CCNGG	4 cut(s)	102, 246, 342, 387
Bme18I	GGWCC	3 cut(s)	13, 290, 812
BmeRI	GACNNNNNGTC	1 cut(s)	582
BmgT120I	GGNCC	5 cut(s)	13, 185, 290, 527, 812
BmiI	GGNNCC	6 cut(s)	14, 15, 70, 240, 528, 679
BmrFI	CCNGG	4 cut(s)	102, 246, 342, 387
BmsI	GCATC	5 cut(s)	338, 552, 747, 965, 993
BpiI	GAAGAC	2 cut(s)	280, 824
BsaJI	CCNNGG	2 cut(s)	234, 386
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 368, 392, 781
Bse1I	ACTGG	2 cut(s)	70, 972
Bse3DI	GCAATG	2 cut(s)	173, 474
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	4 cut(s)	102, 246, 342, 387
BseDI	CCNNGG	2 cut(s)	234, 386
BseGI	GGATG	4 cut(s)	109, 230, 453, 762
BseLI	CCNNNNNNNGG	4 cut(s)	367, 368, 392, 781
BseMI	GCAATG	2 cut(s)	173, 474
BseMII	CTCAG	2 cut(s)	660, 692
BseNI	ACTGG	2 cut(s)	70, 972
BseRI	GAGGAG	1 cut(s)	759
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	338, 532
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	3 cut(s)	236, 947, 961
BshFI	GGCC	6 cut(s)	187, 382, 529, 729, 944, 964
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	3 cut(s)	26, 313, 636
BslI	CCNNNNNNNGG	4 cut(s)	367, 368, 392, 781
BsmAI	GTCTC	4 cut(s)	324, 420, 647, 866
BsmFI	GGGAC	3 cut(s)	26, 313, 636
BsmI	GAATGC	2 cut(s)	105, 903
BsnI	GGCC	6 cut(s)	187, 382, 529, 729, 944, 964
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	4, 95, 167, 913
BspACI	CCGC	7 cut(s)	234, 236, 379, 423, 767, 945, 961
BspANI	GGCC	6 cut(s)	187, 382, 529, 729, 944, 964
BspCNI	CTCAG	2 cut(s)	659, 693
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	3 cut(s)	236, 947, 961
BspLI	GGNNCC	6 cut(s)	14, 15, 70, 240, 528, 679
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	3 cut(s)	12, 103, 175
BsrDI	GCAATG	2 cut(s)	173, 474
BsrI	ACTGG	2 cut(s)	70, 972
BssECI	CCNNGG	2 cut(s)	234, 386
BssMI	GATC	4 cut(s)	4, 95, 167, 913
Bst2UI	CCWGG	4 cut(s)	102, 246, 342, 387
Bst4CI	ACNGT	7 cut(s)	304, 349, 574, 610, 627, 877, 983
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	954
BstDEI	CTNAG	3 cut(s)	646, 701, 923
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	4 cut(s)	109, 230, 453, 762
BstFNI	CGCG	3 cut(s)	236, 947, 961
BstKTI	GATC	4 cut(s)	7, 98, 170, 916
BstMAI	GTCTC	4 cut(s)	324, 420, 647, 866
BstMBI	GATC	4 cut(s)	4, 95, 167, 913
BstMWI	GCNNNNNNNGC	9 cut(s)	184, 233, 332, 526, 560, 586, 941, 953, 958
BstNI	CCWGG	4 cut(s)	102, 246, 342, 387
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	4 cut(s)	100, 244, 340, 385
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	236, 947, 961
BstV1I	GCAGC	2 cut(s)	338, 532
BstV2I	GAAGAC	2 cut(s)	280, 824
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	6 cut(s)	187, 382, 529, 729, 944, 964
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	942
BtsCI	GGATG	4 cut(s)	109, 230, 453, 762
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	486, 965
Cac8I	GCNNGC	1 cut(s)	954
CaiI	CAGNNNCTG	2 cut(s)	332, 392
Cfr13I	GGNCC	5 cut(s)	13, 185, 290, 527, 812
Cfr42I	CCGCGG	1 cut(s)	237
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	345, 606
CviAII	CATG	5 cut(s)	92, 209, 419, 869, 986
CviQI	GTAC	2 cut(s)	345, 606
DdeI	CTNAG	3 cut(s)	646, 701, 923
DpnI	GATC	4 cut(s)	6, 97, 169, 915
DpnII	GATC	4 cut(s)	4, 95, 167, 913
DraI	TTTAAA	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	582
EaeI	YGGCCR	4 cut(s)	380, 727, 942, 962
Eam1105I	GACNNNNNGTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	438
Eco47I	GGWCC	3 cut(s)	13, 290, 812
EcoO109I	RGGNCCY	2 cut(s)	13, 185
EcoRII	CCWGG	4 cut(s)	100, 244, 340, 385
FaeI	CATG	5 cut(s)	95, 212, 422, 872, 989
FaqI	GGGAC	3 cut(s)	26, 313, 636
FatI	CATG	5 cut(s)	91, 208, 418, 868, 985
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	327, 380, 521, 768, 945, 962
FokI	GGATG	4 cut(s)	96, 217, 460, 769
Fsp4HI	GCNGC	6 cut(s)	327, 380, 521, 768, 945, 962
FspBI	CTAG	2 cut(s)	54, 717
GluI	GCNGC	6 cut(s)	327, 380, 521, 768, 945, 962
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	6 cut(s)	187, 382, 529, 729, 944, 964
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	95, 212, 422, 872, 989
HincII	GTYRAC	2 cut(s)	880, 991
HindII	GTYRAC	2 cut(s)	880, 991
HinfI	GANTC	2 cut(s)	251, 919
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	90, 796
Hpy166II	GTNNAC	3 cut(s)	227, 880, 991
Hpy188I	TCNGA	4 cut(s)	9, 702, 816, 918
Hpy188III	TCNNGA	4 cut(s)	54, 72, 681, 722
Hpy8I	GTNNAC	3 cut(s)	227, 880, 991
HpyAV	CCTTC	3 cut(s)	146, 198, 842
HpyCH4III	ACNGT	7 cut(s)	304, 349, 574, 610, 627, 877, 983
HpyCH4IV	ACGT	2 cut(s)	50, 583
HpyCH4V	TGCA	6 cut(s)	227, 326, 479, 497, 543, 893
HpyF10VI	GCNNNNNNNGC	9 cut(s)	184, 233, 332, 526, 560, 586, 941, 953, 958
HpyF3I	CTNAG	3 cut(s)	646, 701, 923
HpySE526I	ACGT	2 cut(s)	50, 583
Hsp92II	CATG	5 cut(s)	95, 212, 422, 872, 989
KflI	GGGWCCC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	71
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	4, 95, 167, 913
Lsp1109I	GCAGC	2 cut(s)	338, 532
LweI	GCATC	5 cut(s)	338, 552, 747, 965, 993
MaeI	CTAG	2 cut(s)	54, 717
MaeII	ACGT	2 cut(s)	50, 583
MaeIII	GTNAC	5 cut(s)	158, 574, 610, 853, 977
MalI	GATC	4 cut(s)	6, 97, 169, 915
MboI	GATC	4 cut(s)	4, 95, 167, 913
MboII	GAAGA	5 cut(s)	183, 285, 409, 500, 829
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	407, 669, 883
MlyI	GAGTC	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	4 cut(s)	102, 246, 342, 387
Mva1269I	GAATGC	2 cut(s)	105, 903
MvaI	CCWGG	4 cut(s)	102, 246, 342, 387
MvnI	CGCG	3 cut(s)	236, 947, 961
MwoI	GCNNNNNNNGC	9 cut(s)	184, 233, 332, 526, 560, 586, 941, 953, 958
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	4 cut(s)	4, 95, 167, 913
NlaIII	CATG	5 cut(s)	95, 212, 422, 872, 989
NlaIV	GGNNCC	6 cut(s)	14, 15, 70, 240, 528, 679
NmuCI	GTSAC	3 cut(s)	574, 610, 853
NspI	RCATGY	1 cut(s)	212
PctI	GAATGC	2 cut(s)	105, 903
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	6 cut(s)	328, 381, 522, 769, 946, 963
PleI	GAGTC	1 cut(s)	927
PpsI	GAGTC	1 cut(s)	927
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	4 cut(s)	100, 244, 340, 385
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	4 cut(s)	100, 244, 340, 385
PspN4I	GGNNCC	6 cut(s)	14, 15, 70, 240, 528, 679
PspPI	GGNCC	5 cut(s)	13, 185, 290, 527, 812
PspPPI	RGGWCCY	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	2 cut(s)	332, 392
RsaI	GTAC	2 cut(s)	346, 607
RsaNI	GTAC	2 cut(s)	345, 606
RseI	CAYNNNNRTG	1 cut(s)	479
SacII	CCGCGG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	6 cut(s)	327, 380, 521, 768, 945, 962
Sau3AI	GATC	4 cut(s)	4, 95, 167, 913
Sau96I	GGNCC	5 cut(s)	13, 185, 290, 527, 812
SchI	GAGTC	1 cut(s)	928
ScrFI	CCNGG	4 cut(s)	102, 246, 342, 387
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	9 cut(s)	53, 280, 295, 538, 586, 786, 796, 800, 853
SfaNI	GCATC	5 cut(s)	338, 552, 747, 965, 993
SfcI	CTRYAG	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	3 cut(s)	13, 290, 812
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	407, 669, 883
SsiI	CCGC	7 cut(s)	234, 236, 379, 423, 767, 945, 961
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	54, 717
StyD4I	CCNGG	4 cut(s)	100, 244, 340, 385
TaaI	ACNGT	7 cut(s)	304, 349, 574, 610, 627, 877, 983
TaiI	ACGT	2 cut(s)	53, 586
TaqI	TCGA	2 cut(s)	194, 280
TasI	AATT	3 cut(s)	407, 669, 883
TauI	GCSGC	4 cut(s)	382, 770, 947, 964
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	2 cut(s)	486, 972
TseFI	GTSAC	3 cut(s)	574, 610, 853
TseI	GCWGC	2 cut(s)	326, 520
Tsp45I	GTSAC	3 cut(s)	574, 610, 853
TspDTI	ATGAA	3 cut(s)	98, 297, 927
TspRI	CASTG	2 cut(s)	486, 972
Van91I	CCANNNNNTGG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	3 cut(s)	13, 290, 812
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	2 cut(s)	54, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.