Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009833

Physical Location & Seq

Genomic Coordinates Reverse (-)

9146175 .. 9149963

Gene Structure 3789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCATATGGTTATGGGGTTGCCTTTGAAGACGCTTGTCTCTCTTGCTCTTTCCCTTAAGCATGAAGCCTTTTTGTTGTTTCCCTTGGTTTGGAGGGGGCATTTTGCATTGAGTTGCAAAGTTGGGGCTTCGAAATTGCCTTTGAAAGATAACCGAAATAAATGCATGGATCGTAGGGACCCTATGGCATTGTCGGGGTCAGCCTCTTACTTTACGTCTAGAGGAATAACTGGGTCTGGAACACTGTCTGGATTACATGGATCGCCAGGCATTCATCCCTTATCTAATCCAAATATGGCATTTCAATCTAATATTGGAGGAACTAACATTGAGTCAACATTGCCGGTAGAGCCTTCTTCAGCTATTTCATACCATGGTGTCAATGTGGGTGCACCAACTGTGGCGCCACTAGGCGAATCTTTGAAAAGGAAAAGAGGAAGGCCTCGAAAATATGGACCTGATGGGACTGTTTCATTGGCATTGTCTCCTGCAGCATCTGCTAATCCTGGTACGGTATCATCAAGCCCAAAACGAGGTAGAGGGCGGCCACCAGGGTCTGGGAAGAAGCAACAATTAGCATCTCTTGGCGGATTGCTGTCTGGTTCGGCTGGGATAGGTTTTACTCCACATATTATCAGCATTGCAGTGGGAGAAGACGTTTCAACAAAAATAATGGCGTTTTCACAGCAAGGGCCAAGAGCTGTGTGCGTCTTGTCAGCTAATGGTGCTGTCTCGACTGTGACACTTCGTCAGCCCTCAACTTCTGGGGGTACAGTCACATATGAGGGACGGTTTGAGATTATATGTCTCTCAGGTTCTTACTTGCTCACTGAAATTGGAAGCTCCCGAAACCGAAGTGGCGGTCTGAGCGTCTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTAGGAGGGATGCTTATTGCAGCAACCCCTGTTCAGGTGATATTAGGTAGCTTCACATGGGGTGGTTTGAAGACAAAGAACAAGAAAAAGGAAGCCGTAGAAGGTGTCACAGACTTGGAACATGACACAGTTGACAATTCAGTTGTACTAAACAGCATTCAACCAGATCAAAGTCTTAGCCAAGGTGCTTCATTGGCCGCATGGCAGGCATCACAGCCACTGGATATGCATAACAGTCATGTTGGCATTGATTTGATGCGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

393

Amino Acids

40.54

Weight (kDa)

9.84

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61310
fragaria_vesca	FvH4_7g13980 FvH4_7g13980
malus_domestica	MD01G1056200.v1.1 MD07G1139600.v1.1
prunus_persica	Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1
pyrus_communis	pycom01g08170 pycom07g13730
rosa_chinensis	RchiOBHm_Chr1g0354631
rosa_laevigata	RLG00000028194
rosa_multiflora	Rmu_sc0006632.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300890
rosa_rugosa	Rorug01G0243500
rosa_samantha	Rh1AG254700 Rh1BG225300 Rh1CG237700 Rh1DG253300
rosa_wichuraiana	Rw1G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	557
AciI	CCGC	4 cut(s)	544, 588, 861, 1110
AclWI	GGATC	2 cut(s)	177, 268
AcoI	YGGCCR	2 cut(s)	545, 1107
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	3 cut(s)	511, 772, 1059
AfiI	CCNNNNNNNGG	4 cut(s)	90, 533, 557, 946
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	7 cut(s)	28, 145, 305, 424, 663, 982, 1073
AhdI	GACNNNNNGTC	1 cut(s)	747
AjnI	CCWGG	3 cut(s)	265, 505, 550
AluBI	AGCT	5 cut(s)	362, 701, 719, 843, 963
AluI	AGCT	5 cut(s)	362, 701, 719, 843, 963
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	5 cut(s)	43, 489, 736, 812, 877
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	177, 268
AlwNI	CAGNNNCTG	3 cut(s)	497, 557, 1132
AoxI	GGCC	4 cut(s)	440, 545, 692, 1107
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	491, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	178, 455, 692
AsuHPI	GGTGA	1 cut(s)	961
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	178, 455
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	403
BbsI	GAAGAC	3 cut(s)	35, 660, 989
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	503, 944
BccI	CCATC	2 cut(s)	455, 884
BceAI	ACGGC	1 cut(s)	992
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	3 cut(s)	267, 507, 552
BcoDI	GTCTC	5 cut(s)	43, 489, 736, 812, 877
BfaI	CTAG	3 cut(s)	219, 410, 882
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	407
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	4 cut(s)	492, 545, 933, 1110
BlsI	GCNGC	4 cut(s)	493, 546, 934, 1111
Bme1390I	CCNGG	3 cut(s)	267, 507, 552
Bme18I	GGWCC	2 cut(s)	178, 455
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	178, 455, 692
BmiI	GGNNCC	3 cut(s)	179, 180, 405
BmrFI	CCNGG	3 cut(s)	267, 507, 552
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	5 cut(s)	503, 587, 912, 1130, 1158
BmuI	ACTGGG	1 cut(s)	240
BoxI	GACNNNNGTC	1 cut(s)	35
BpiI	GAAGAC	3 cut(s)	35, 660, 989
Bpu14I	TTCGAA	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	84, 373, 551, 1093
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 533, 557, 946
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	235, 1137
Bse3DI	GCAATG	2 cut(s)	338, 639
BseBI	CCWGG	3 cut(s)	267, 507, 552
BseDI	CCNNGG	4 cut(s)	84, 373, 551, 1093
BseGI	GGATG	2 cut(s)	274, 927
BseLI	CCNNNNNNNGG	4 cut(s)	90, 533, 557, 946
BseMI	GCAATG	2 cut(s)	338, 639
BseMII	CTCAG	2 cut(s)	825, 857
BseNI	ACTGG	2 cut(s)	235, 1137
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	503, 944
BseYI	CCCAGC	1 cut(s)	608
BshFI	GGCC	4 cut(s)	442, 547, 694, 1109
BshNI	GGYRCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	3 cut(s)	191, 478, 801
BslI	CCNNNNNNNGG	4 cut(s)	90, 533, 557, 946
BsmAI	GTCTC	5 cut(s)	43, 489, 736, 812, 877
BsmBI	CGTCTC	1 cut(s)	877
BsmFI	GGGAC	3 cut(s)	191, 478, 801
BsmI	GAATGC	2 cut(s)	270, 1068
BsnI	GGCC	4 cut(s)	442, 547, 694, 1109
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	169, 260, 1078
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	4 cut(s)	544, 588, 861, 1110
BspANI	GGCC	4 cut(s)	442, 547, 694, 1109
BspCNI	CTCAG	2 cut(s)	824, 858
BspLI	GGNNCC	3 cut(s)	179, 180, 405
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	177, 268
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	338, 639
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	235, 1137
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	4 cut(s)	84, 373, 551, 1093
BssMI	GATC	3 cut(s)	169, 260, 1078
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	3 cut(s)	84, 373, 1093
Bst2UI	CCWGG	3 cut(s)	267, 507, 552
Bst4CI	ACNGT	9 cut(s)	246, 400, 469, 514, 739, 775, 792, 1042, 1148
BstACI	GRCGYC	1 cut(s)	404
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	1119
BstDEI	CTNAG	3 cut(s)	811, 866, 1088
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	274, 927
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	3 cut(s)	172, 263, 1081
BstMAI	GTCTC	5 cut(s)	43, 489, 736, 812, 877
BstMBI	GATC	3 cut(s)	169, 260, 1078
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 497, 725, 867, 1106, 1118
BstNI	CCWGG	3 cut(s)	267, 507, 552
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	265, 505, 550
BstSFI	CTRYAG	1 cut(s)	489
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	503, 944
BstV2I	GAAGAC	3 cut(s)	35, 660, 989
BsuRI	GGCC	4 cut(s)	442, 547, 694, 1109
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	274, 927
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	242, 651, 828, 1130
Cac8I	GCNNGC	1 cut(s)	1119
CaiI	CAGNNNCTG	3 cut(s)	497, 557, 1132
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	3 cut(s)	178, 455, 692
CseI	GACGC	3 cut(s)	40, 697, 859
Csp6I	GTAC	3 cut(s)	510, 771, 1058
CviAII	CATG	8 cut(s)	62, 166, 257, 374, 969, 1034, 1113, 1151
CviQI	GTAC	3 cut(s)	510, 771, 1058
DdeI	CTNAG	3 cut(s)	811, 866, 1088
DinI	GGCGCC	1 cut(s)	405
DpnI	GATC	3 cut(s)	171, 262, 1080
DpnII	GATC	3 cut(s)	169, 260, 1078
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	2 cut(s)	545, 1107
Eam1105I	GACNNNNNGTC	1 cut(s)	747
EciI	GGCGGA	1 cut(s)	603
Eco130I	CCWWGG	3 cut(s)	84, 373, 1093
Eco147I	AGGCCT	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	178, 455
Eco57I	CTGAAG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	265, 505, 550
EcoT14I	CCWWGG	3 cut(s)	84, 373, 1093
EcoT22I	ATGCAT	3 cut(s)	6, 167, 1143
EgeI	GGCGCC	1 cut(s)	405
EheI	GGCGCC	1 cut(s)	405
ErhI	CCWWGG	3 cut(s)	84, 373, 1093
Esp3I	CGTCTC	1 cut(s)	877
FaeI	CATG	8 cut(s)	65, 169, 260, 377, 972, 1037, 1116, 1154
FaqI	GGGAC	3 cut(s)	191, 478, 801
FatI	CATG	8 cut(s)	61, 165, 256, 373, 968, 1033, 1112, 1150
FauNDI	CATATG	2 cut(s)	6, 781
Fnu4HI	GCNGC	4 cut(s)	492, 545, 933, 1110
FokI	GGATG	2 cut(s)	261, 934
Fsp4HI	GCNGC	4 cut(s)	492, 545, 933, 1110
FspBI	CTAG	3 cut(s)	219, 410, 882
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	492, 545, 933, 1110
GsaI	CCCAGC	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	4 cut(s)	442, 547, 694, 1109
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	3 cut(s)	40, 697, 859
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	8 cut(s)	65, 169, 260, 377, 972, 1037, 1116, 1154
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	2 cut(s)	336, 1045
HindII	GTYRAC	2 cut(s)	336, 1045
HinfI	GANTC	2 cut(s)	332, 416
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	961
Hpy166II	GTNNAC	3 cut(s)	336, 392, 1045
Hpy188I	TCNGA	1 cut(s)	867
Hpy188III	TCNNGA	6 cut(s)	219, 237, 249, 733, 846, 887
Hpy8I	GTNNAC	3 cut(s)	336, 392, 1045
HpyAV	CCTTC	3 cut(s)	363, 432, 1007
HpyCH4III	ACNGT	9 cut(s)	246, 400, 469, 514, 739, 775, 792, 1042, 1148
HpyCH4IV	ACGT	2 cut(s)	215, 657
HpyCH4V	TGCA	9 cut(s)	4, 107, 117, 165, 392, 491, 644, 932, 1141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 497, 725, 867, 1106, 1118
HpyF3I	CTNAG	3 cut(s)	811, 866, 1088
HpySE526I	ACGT	2 cut(s)	215, 657
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	8 cut(s)	65, 169, 260, 377, 972, 1037, 1116, 1154
HspAI	GCGC	1 cut(s)	404
KasI	GGCGCC	1 cut(s)	403
KflI	GGGWCCC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	169, 260, 1078
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	2 cut(s)	503, 944
LweI	GCATC	5 cut(s)	503, 587, 912, 1130, 1158
MaeI	CTAG	3 cut(s)	219, 410, 882
MaeII	ACGT	2 cut(s)	215, 657
MaeIII	GTNAC	3 cut(s)	739, 775, 1018
MalI	GATC	3 cut(s)	171, 262, 1080
MboI	GATC	3 cut(s)	169, 260, 1078
MboII	GAAGA	5 cut(s)	40, 348, 574, 665, 994
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	134, 572, 834, 1048
Mly113I	GGCGCC	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	341
Mph1103I	ATGCAT	3 cut(s)	6, 167, 1143
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	267, 507, 552
Mva1269I	GAATGC	2 cut(s)	270, 1068
MvaI	CCWGG	3 cut(s)	267, 507, 552
MwoI	GCNNNNNNNGC	6 cut(s)	349, 497, 725, 867, 1106, 1118
NarI	GGCGCC	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	373
NdeI	CATATG	2 cut(s)	6, 781
NdeII	GATC	3 cut(s)	169, 260, 1078
NlaIII	CATG	8 cut(s)	65, 169, 260, 377, 972, 1037, 1116, 1154
NlaIV	GGNNCC	3 cut(s)	179, 180, 405
NmuCI	GTSAC	3 cut(s)	739, 775, 1018
NsiI	ATGCAT	3 cut(s)	6, 167, 1143
NspV	TTCGAA	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	2 cut(s)	270, 1068
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	4 cut(s)	493, 546, 934, 1111
PleI	GAGTC	1 cut(s)	340
PluTI	GGCGCC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	265, 505, 550
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	3 cut(s)	265, 505, 550
PspN4I	GGNNCC	3 cut(s)	179, 180, 405
PspPI	GGNCC	3 cut(s)	178, 455, 692
PspPPI	RGGWCCY	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	3 cut(s)	497, 557, 1132
RsaI	GTAC	3 cut(s)	511, 772, 1059
RsaNI	GTAC	3 cut(s)	510, 771, 1058
RseI	CAYNNNNRTG	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	492, 545, 933, 1110
Sau3AI	GATC	3 cut(s)	169, 260, 1078
Sau96I	GGNCC	3 cut(s)	178, 455, 692
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	3 cut(s)	267, 507, 552
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	5 cut(s)	503, 587, 912, 1130, 1158
SfcI	CTRYAG	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	178, 455
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	134, 572, 834, 1048
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	544, 588, 861, 1110
SspDI	GGCGCC	1 cut(s)	403
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	219, 410, 882
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	3 cut(s)	265, 505, 550
StyI	CCWWGG	3 cut(s)	84, 373, 1093
TaaI	ACNGT	9 cut(s)	246, 400, 469, 514, 739, 775, 792, 1042, 1148
TaiI	ACGT	2 cut(s)	218, 660
TaqI	TCGA	3 cut(s)	131, 445, 734
TasI	AATT	4 cut(s)	134, 572, 834, 1048
TatI	WGTACW	1 cut(s)	1057
TauI	GCSGC	2 cut(s)	547, 1112
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	4 cut(s)	249, 651, 835, 1137
TseFI	GTSAC	3 cut(s)	739, 775, 1018
TseI	GCWGC	2 cut(s)	491, 932
Tsp45I	GTSAC	3 cut(s)	739, 775, 1018
TspDTI	ATGAA	5 cut(s)	78, 263, 357, 462, 1092
TspRI	CASTG	4 cut(s)	249, 651, 835, 1137
Van91I	CCANNNNNTGG	1 cut(s)	557
Vha464I	CTTAAG	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	178, 455
XbaI	TCTAGA	1 cut(s)	218
XspI	CTAG	3 cut(s)	219, 410, 882
Zsp2I	ATGCAT	3 cut(s)	6, 167, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.