Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009833

Physical Location & Seq

Genomic Coordinates Reverse (-)

47054060 .. 47057273

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATCGGAGGGACCATATGGCAATGTCGGGGTCAGCCTCTTATTACACACCGAGATCAATAACTGGGTCTGGAACACAGTCTGGGTTACTTGGATCACCAGGCATTCATCCCTTATCTAATCCAAATGCAGTATTTCAGTCCAATATGGTGGCCAGTACGATTGGGTCAACATTACCAGTAGACCCTTCTTCGGCTATTTCACCTCATGGTGTCAATGTGGGTGCACCGTCTGTGGCGCCACAAGGTGAATCTGTGAAAAGGAAAAGAGGAAGACCTCGAAAATATGGACCTGATGGGACTGTTTCATTGGCATTATCTCCGTCATCATCCTCCAATCCTGGGATGGTAGCTTCAAGCCCAAAGCGAGGTAGAGGGCGGCCACCAGGGTCTGGGAAGAAGCACCAATTAGCGTCTCTTGGTGAAATGCTGTCTAGTTCAGCTGGAATGGGTTTCACTCCACATATTATCACCATCGCAATGGGAGAAGTGATAGTGGGTAGCTTCATATGGGGTGGTTCAAAGACAAAGAACAAGAAAAAAGAAGCTATAGAAGGTGTCACAGACTTCGACCAACAGATAGTTGACAATTCAGTTGCATTTAATAGCATGCCACCCGATCAAAATTTTACTCAAGGGTCATCGTTGGGTGTGTGGCCATCACCACGACCATTGGATATGCGTAACAGTCATGTTGACATTGATTTGATGCGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

239

Amino Acids

24.97

Weight (kDa)

9.98

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61310
fragaria_vesca	FvH4_7g13980 FvH4_7g13980
malus_domestica	MD01G1056200.v1.1 MD07G1139600.v1.1
prunus_persica	Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1 Prupe.2G167000_v2.0.a1
pyrus_communis	pycom01g08170 pycom07g13730
rosa_chinensis	RchiOBHm_Chr1g0354631
rosa_laevigata	RLG00000028194
rosa_multiflora	Rmu_sc0006632.1_g000004
rosa_roxburghii	Rroxscaffold_4G00300890
rosa_rugosa	Rorug01G0243500
rosa_samantha	Rh1AG254700 Rh1BG225300 Rh1CG237700 Rh1DG253300
rosa_wichuraiana	Rw1G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	2 cut(s)	12, 103
AcoI	YGGCCR	3 cut(s)	153, 380, 656
AcsI	RAATTY	1 cut(s)	625
AcyI	GRCGYC	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	4 cut(s)	193, 342, 368, 392
AgsI	TTSAA	2 cut(s)	357, 522
AjnI	CCWGG	3 cut(s)	100, 340, 385
AluBI	AGCT	4 cut(s)	353, 443, 504, 548
AluI	AGCT	4 cut(s)	353, 443, 504, 548
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	12, 103
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	153, 380, 656
ApaLI	GTGCAC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	13, 290
AsuHPI	GGTGA	6 cut(s)	90, 195, 260, 434, 463, 654
AvaII	GGWCC	2 cut(s)	13, 290
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	2 cut(s)	155, 658
BanI	GGYRCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	4 cut(s)	290, 340, 482, 667
BciT130I	CCWGG	3 cut(s)	102, 342, 387
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	102, 342, 387
Bme18I	GGWCC	2 cut(s)	13, 290
BmgT120I	GGNCC	2 cut(s)	13, 290
BmiI	GGNNCC	2 cut(s)	14, 240
BmrFI	CCNGG	3 cut(s)	102, 342, 387
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	341, 386
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 342, 368, 392
Bse1I	ACTGG	3 cut(s)	70, 156, 179
Bse3DI	GCAATG	2 cut(s)	30, 486
BseBI	CCWGG	3 cut(s)	102, 342, 387
BseDI	CCNNGG	2 cut(s)	341, 386
BseGI	GGATG	3 cut(s)	109, 329, 351
BseLI	CCNNNNNNNGG	4 cut(s)	193, 342, 368, 392
BseMI	GCAATG	2 cut(s)	30, 486
BseNI	ACTGG	3 cut(s)	70, 156, 179
BseSI	GKGCMC	1 cut(s)	229
BshFI	GGCC	3 cut(s)	155, 382, 658
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	26, 313
BslI	CCNNNNNNNGG	4 cut(s)	193, 342, 368, 392
BsmAI	GTCTC	1 cut(s)	420
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	26, 313
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	155, 382, 658
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	4, 56, 95, 619
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	3 cut(s)	155, 382, 658
BspLI	GGNNCC	2 cut(s)	14, 240
BspPI	GGATC	2 cut(s)	12, 103
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	30, 486
BsrI	ACTGG	3 cut(s)	70, 156, 179
BssECI	CCNNGG	2 cut(s)	341, 386
BssMI	GATC	4 cut(s)	4, 56, 95, 619
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	3 cut(s)	102, 342, 387
Bst4CI	ACNGT	4 cut(s)	81, 231, 304, 689
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	611
BstF5I	GGATG	3 cut(s)	109, 329, 351
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	4 cut(s)	7, 59, 98, 622
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	4 cut(s)	4, 56, 95, 619
BstNI	CCWGG	3 cut(s)	102, 342, 387
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	100, 340, 385
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	280
BstXI	CCANNNNNNTGG	2 cut(s)	151, 481
BsuRI	GGCC	3 cut(s)	155, 382, 658
BtgZI	GCGATG	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	109, 329, 351
Cac8I	GCNNGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	13, 290
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	159
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	3 cut(s)	209, 610, 692
CviQI	GTAC	1 cut(s)	159
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	4 cut(s)	6, 58, 97, 621
DpnII	GATC	4 cut(s)	4, 56, 95, 619
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	3 cut(s)	153, 380, 656
Eco47I	GGWCC	2 cut(s)	13, 290
EcoRII	CCWGG	3 cut(s)	100, 340, 385
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	3 cut(s)	212, 613, 695
FaqI	GGGAC	2 cut(s)	26, 313
FatI	CATG	3 cut(s)	208, 609, 691
FauNDI	CATATG	2 cut(s)	18, 509
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	3 cut(s)	96, 316, 358
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	155, 382, 658
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	212, 613, 695
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	3 cut(s)	171, 586, 697
HindII	GTYRAC	3 cut(s)	171, 586, 697
HinfI	GANTC	1 cut(s)	251
HphI	GGTGA	6 cut(s)	90, 195, 260, 434, 463, 654
Hpy166II	GTNNAC	5 cut(s)	171, 184, 227, 586, 697
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	5 cut(s)	171, 184, 227, 586, 697
HpyAV	CCTTC	2 cut(s)	198, 548
HpyCH4III	ACNGT	4 cut(s)	81, 231, 304, 689
HpyCH4V	TGCA	3 cut(s)	131, 227, 599
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	212, 613, 695
HspAI	GCGC	1 cut(s)	239
KasI	GGCGCC	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	4, 56, 95, 619
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	87, 559, 683
MalI	GATC	4 cut(s)	6, 58, 97, 621
MboI	GATC	4 cut(s)	4, 56, 95, 619
MboII	GAAGA	3 cut(s)	183, 285, 409
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	2 cut(s)	155, 658
MluCI	AATT	3 cut(s)	407, 589, 625
MluNI	TGGCCA	2 cut(s)	155, 658
Mly113I	GGCGCC	1 cut(s)	239
MnlI	CCTC	9 cut(s)	3, 49, 216, 263, 288, 343, 362, 368, 707
Mox20I	TGGCCA	2 cut(s)	155, 658
MscI	TGGCCA	2 cut(s)	155, 658
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	2 cut(s)	155, 658
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	3 cut(s)	102, 342, 387
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	3 cut(s)	102, 342, 387
NarI	GGCGCC	1 cut(s)	239
NdeI	CATATG	2 cut(s)	18, 509
NdeII	GATC	4 cut(s)	4, 56, 95, 619
NlaIII	CATG	3 cut(s)	212, 613, 695
NlaIV	GGNNCC	2 cut(s)	14, 240
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	613
PaeI	GCATGC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	381
PluTI	GGCGCC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	100, 340, 385
PspGI	CCWGG	3 cut(s)	100, 340, 385
PspN4I	GGNNCC	2 cut(s)	14, 240
PspPI	GGNCC	2 cut(s)	13, 290
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	4 cut(s)	4, 56, 95, 619
Sau96I	GGNCC	2 cut(s)	13, 290
ScrFI	CCNGG	3 cut(s)	102, 342, 387
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	1 cut(s)	699
SfcI	CTRYAG	1 cut(s)	549
SfoI	GGCGCC	1 cut(s)	240
SinI	GGWCC	2 cut(s)	13, 290
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	3 cut(s)	407, 589, 625
SsiI	CCGC	1 cut(s)	379
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	100, 340, 385
TaaI	ACNGT	4 cut(s)	81, 231, 304, 689
TaqI	TCGA	2 cut(s)	280, 570
TasI	AATT	3 cut(s)	407, 589, 625
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	98, 297, 496
TspGWI	ACGGA	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	13, 290
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.