AT3G61710

Autophagy protein Apg6

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
22839232 .. 22842446
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61710.3

Sequence Viewer

Length: 1554 bp
ATGAGGAAAGAGGAGATTCCAGATAAAAGTCGGACTATCCCGATCGATCCGAATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGCTACGCAGGGCTCATCTATCCATGGAGCTAACAGTGTTCTTGGTTCAACACGCATGGACAACTCTTTTGTTGTTTTACCTCGACATAAGCCTCCTCAATCTCAGGGCATTCCTCCACGTCCTCGCGGGGCGTCCTCACCTCAGCCTGATGCTACTCAATCTGGAAAGGCGATGGAGGAATCGTTTGTAGTTGTCTATAAGTCTGAGCCTGTTTCTGATTCTGGTGGTTCTCACAATCTGTCTCTTGAAGTGGGCCAAAACGGTCCCTTACATTCAAATACTTCTGGCTTTAATGCGACTATCAATGTCTTAACTCGTGCTTTTGATATTGCTAGAACTCAGACACAGGTTGAACAGCCATTGTGCTTAGAATGCATGAGGGTATTGTCTGATAAACTTGAAAAAGAAGTCGAGGATGTGACGAGGGACGTGGAAGCATACGAAGCATGCGTTCAGAGGTTAGAAGGAGAGACGCAAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAAAAGAAGAAGATTGAGGAAGAAGAAAGAAAACTTGTTGCAGCTATAGAAGAAACAGAGAAACAAAATGCTGAAGTAAACCATCAACTGAAGGAGCTAGAATTCAAGGGAAATCGTTTTAACGAACTTGAAGATCGGTATTGGCAAGAGTTCAATAATTTTCAGTTTCAATTAATTGCCCATCAGGAAGAGAGAGATGCAATCTTGGCAAAGATTGAAGTTTCACAAGCACATTTAGAGTTATTAAATAAGACAAATGTACTTATTGATGCCTTCCCCATACGGAATGATGGGGAATTTGGTACAATTAACAATTTTCGACTTGGAAGACTCCCTGCCATAAAAGTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAATGTCAAGTTAAAATACAGCCGATGGGGAGTTATCCTAGAATTGTAGACAGCAACAACGAAACTTATGAGCTGTTTGGTCCTGTTAACTTGTTTTGGAGCACTCGGTACGATAAAGCCATGACACTGTATTTGATGTGTCTTAAAGACTTTGCTGATTTTGCAAATTCAAAGGACCAAGAGAACAATATTCCACCAGATAATTGCCTCAACCTTCCATACAAGATCGAAAAGGACAAAGTATTGGGGTATTCAATAACACAGAGCTTCAACAAGCAAGAGAGTTGGACCAAAGCACTAAAGTATACTCTCTGCAACCTCAAATGGGCTCTCTACTGGTTCGTTGGAAACACTAATTTCCAACCTCTCTCTGCGACGGTCTCTCTGCCTTCTAATATATCAGCGGCTGGTTCCTTGTACGCCAAGCGAGGTCCTGACTCTAGTAAGCCTTCATGTAAAAAAACTTAG

Protein Analysis

517

Amino Acids

58.5

Weight (kDa)

5.64

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APG6_N PF17675 102 - 230 2.7e-28 Apg6 coiled-coil region
APG6 PF04111 233 - 295 1.3e-24 Apg6 BARA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1134, 1391
AccII CGCG 1 cut(s) 276
AciI CCGC 3 cut(s) 150, 276, 1490
AclWI GGATC 2 cut(s) 41, 131
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 3 cut(s) 758, 953, 1252
AcuI CTGAAG 2 cut(s) 750, 767
AcyI GRCGYC 2 cut(s) 105, 281
AfaI GTAC 4 cut(s) 918, 961, 1196, 1505
AfiI CCNNNNNNNGG 1 cut(s) 1411
AjiI CACGTC 2 cut(s) 269, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AluBI AGCT 6 cut(s) 179, 644, 701, 754, 1159, 1353
AluI AGCT 6 cut(s) 179, 644, 701, 754, 1159, 1353
Alw21I GWGCWC 1 cut(s) 1190
Alw26I GTCTC 3 cut(s) 396, 614, 1471
AlwI GGATC 2 cut(s) 41, 131
AlwNI CAGNNNCTG 1 cut(s) 1493
AoxI GGCC 3 cut(s) 403, 1033, 1076
ApeKI GCWGC 2 cut(s) 698, 1025
ApoI RAATTY 3 cut(s) 758, 953, 1252
ArsI GACNNNNNNTTYG 4 cut(s) 200, 232, 1201, 1233
AseI ATTAAT 1 cut(s) 830
AspS9I GGNCC 7 cut(s) 403, 413, 1033, 1166, 1261, 1374, 1517
AsuHPI GGTGA 2 cut(s) 74, 279
AvaII GGWCC 5 cut(s) 413, 1166, 1261, 1374, 1517
BanII GRGCYC 2 cut(s) 164, 1417
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 991, 1037
Bbv12I GWGCWC 1 cut(s) 1190
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 710, 1012
BccI CCATC 6 cut(s) 104, 316, 747, 846, 941, 1105
BcoDI GTCTC 3 cut(s) 396, 614, 1471
BfaI CTAG 4 cut(s) 483, 755, 1125, 1527
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 3 cut(s) 699, 1026, 1491
BlsI GCNGC 3 cut(s) 700, 1027, 1492
Bme18I GGWCC 5 cut(s) 413, 1166, 1261, 1374, 1517
BmgBI CACGTC 2 cut(s) 269, 580
BmgT120I GGNCC 7 cut(s) 403, 413, 1033, 1166, 1261, 1374, 1517
BmiI GGNNCC 3 cut(s) 415, 1034, 1498
BmsI GCATC 3 cut(s) 289, 844, 916
BpiI GAAGAC 2 cut(s) 991, 1037
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 638
Bsa29I ATCGAT 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 105, 281
BsaI GGTCTC 1 cut(s) 1471
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 1411
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 1427
Bse8I GATNNNNATC 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 571, 1018
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 1411
BseMII CTCAG 4 cut(s) 266, 305, 345, 503
BseNI ACTGG 1 cut(s) 1427
BseRI GAGGAG 3 cut(s) 26, 234, 1040
BseXI GCAGC 2 cut(s) 710, 1012
Bsh1236I CGCG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 405, 1035, 1078
BshVI ATCGAT 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 1190
BsiSI CCGG 2 cut(s) 120, 1075
BslFI GGGAC 2 cut(s) 399, 590
BslI CCNNNNNNNGG 1 cut(s) 1411
BsmAI GTCTC 3 cut(s) 396, 614, 1471
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 399, 590
BsmI GAATGC 2 cut(s) 258, 527
BsnI GGCC 3 cut(s) 405, 1035, 1078
Bso31I GGTCTC 1 cut(s) 1471
Bsp1286I GDGCHC 3 cut(s) 164, 1190, 1417
Bsp143I GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
Bsp19I CCATGG 1 cut(s) 172
BspACI CCGC 3 cut(s) 150, 276, 1490
BspANI GGCC 3 cut(s) 405, 1035, 1078
BspCNI CTCAG 4 cut(s) 265, 304, 346, 502
BspDI ATCGAT 1 cut(s) 45
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 415, 1034, 1498
BspPI GGATC 2 cut(s) 41, 131
BspTNI GGTCTC 1 cut(s) 1471
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 1427
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
BssNAI GTATAC 1 cut(s) 1392
BssNI GRCGYC 2 cut(s) 105, 281
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 172
Bst1107I GTATAC 1 cut(s) 1392
Bst2BI CACGAG 1 cut(s) 465
Bst4CI ACNGT 5 cut(s) 80, 185, 413, 1215, 1465
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 2 cut(s) 105, 281
BstC8I GCNNGC 2 cut(s) 121, 598
BstDEI CTNAG 7 cut(s) 252, 291, 354, 489, 517, 635, 1551
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 571, 1018
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 6 cut(s) 45, 49, 139, 793, 1020, 1314
BstMAI GTCTC 3 cut(s) 396, 614, 1471
BstMBI GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 4 cut(s) 522, 593, 863, 1247
BstNSI RCATGY 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 710, 1012
BstV2I GAAGAC 2 cut(s) 991, 1037
BstZ17I GTATAC 1 cut(s) 1392
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 3 cut(s) 405, 1035, 1078
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 335
BtrI CACGTC 2 cut(s) 269, 580
BtsCI GGATG 2 cut(s) 571, 1018
BtsIMutI CAGTG 2 cut(s) 190, 1211
Cac8I GCNNGC 2 cut(s) 121, 598
CaiI CAGNNNCTG 1 cut(s) 1493
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 7 cut(s) 403, 413, 1033, 1166, 1261, 1374, 1517
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 3 cut(s) 94, 270, 631
Csp6I GTAC 4 cut(s) 917, 960, 1195, 1504
CviAII CATG 6 cut(s) 173, 205, 526, 597, 1207, 1539
CviQI GTAC 4 cut(s) 917, 960, 1195, 1504
DdeI CTNAG 7 cut(s) 252, 291, 354, 489, 517, 635, 1551
DpnI GATC 6 cut(s) 44, 48, 138, 792, 1019, 1313
DpnII GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 164, 1417
Eco31I GGTCTC 1 cut(s) 1471
Eco47I GGWCC 5 cut(s) 413, 1166, 1261, 1374, 1517
Eco57I CTGAAG 2 cut(s) 750, 767
EcoO109I RGGNCCY 1 cut(s) 1517
EcoRI GAATTC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 527
EcoT38I GRGCYC 2 cut(s) 164, 1417
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 6 cut(s) 176, 208, 529, 600, 1210, 1542
FalI AAGNNNNNCTT 4 cut(s) 618, 650, 1029, 1061
FaqI GGGAC 2 cut(s) 399, 590
FatI CATG 6 cut(s) 172, 204, 525, 596, 1206, 1538
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 2 cut(s) 1134, 1391
Fnu4HI GCNGC 3 cut(s) 699, 1026, 1491
FokI GGATG 2 cut(s) 578, 1025
FriOI GRGCYC 2 cut(s) 164, 1417
Fsp4HI GCNGC 3 cut(s) 699, 1026, 1491
FspBI CTAG 4 cut(s) 483, 755, 1125, 1527
GluI GCNGC 3 cut(s) 699, 1026, 1491
HaeIII GGCC 3 cut(s) 405, 1035, 1078
HapII CCGG 2 cut(s) 120, 1075
HgaI GACGC 3 cut(s) 94, 270, 631
Hin1I GRCGYC 2 cut(s) 105, 281
Hin1II CATG 6 cut(s) 176, 208, 529, 600, 1210, 1542
HincII GTYRAC 1 cut(s) 1174
HindII GTYRAC 1 cut(s) 1174
HinfI GANTC 7 cut(s) 16, 52, 110, 329, 368, 987, 1523
HpaI GTTAAC 1 cut(s) 1174
HpaII CCGG 2 cut(s) 120, 1075
HphI GGTGA 2 cut(s) 74, 279
Hpy166II GTNNAC 4 cut(s) 736, 1135, 1174, 1392
Hpy188I TCNGA 7 cut(s) 33, 51, 355, 367, 492, 541, 606
Hpy188III TCNNGA 6 cut(s) 20, 40, 312, 395, 842, 1520
Hpy8I GTNNAC 4 cut(s) 736, 1135, 1174, 1392
Hpy99I CGWCG 3 cut(s) 104, 110, 1465
HpyAV CCTTC 6 cut(s) 608, 742, 940, 1310, 1485, 1545
HpyCH4III ACNGT 5 cut(s) 80, 185, 413, 1215, 1465
HpyCH4IV ACGT 2 cut(s) 268, 579
HpyCH4V TGCA 5 cut(s) 525, 698, 857, 1250, 1401
HpyF10VI GCNNNNNNNGC 4 cut(s) 522, 593, 863, 1247
HpyF3I CTNAG 7 cut(s) 252, 291, 354, 489, 517, 635, 1551
HpySE526I ACGT 2 cut(s) 268, 579
Hsp92I GRCGYC 2 cut(s) 105, 281
Hsp92II CATG 6 cut(s) 176, 208, 529, 600, 1210, 1542
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 1174
Kzo9I GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
LmnI GCTCC 3 cut(s) 176, 751, 1185
Lsp1109I GCAGC 2 cut(s) 710, 1012
LweI GCATC 3 cut(s) 289, 844, 916
MaeI CTAG 4 cut(s) 483, 755, 1125, 1527
MaeII ACGT 2 cut(s) 268, 579
MaeIII GTNAC 3 cut(s) 80, 568, 1064
MalI GATC 6 cut(s) 44, 48, 138, 792, 1019, 1313
MboI GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
MhlI GDGCHC 3 cut(s) 164, 1190, 1417
MlyI GAGTC 2 cut(s) 981, 1517
MmeI TCCRAC 4 cut(s) 11, 1352, 1411, 1471
Mph1103I ATGCAT 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 119
MseI TTAA 9 cut(s) 441, 461, 777, 830, 902, 966, 1098, 1173, 1230
MspA1I CMGCKG 1 cut(s) 1490
MspI CCGG 2 cut(s) 120, 1075
Mva1269I GAATGC 2 cut(s) 258, 527
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 522, 593, 863, 1247
NaeI GCCGGC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 172
NdeII GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 6 cut(s) 176, 208, 529, 600, 1210, 1542
NlaIV GGNNCC 3 cut(s) 415, 1034, 1498
NmuCI GTSAC 2 cut(s) 80, 568
NsiI ATGCAT 1 cut(s) 527
NspI RCATGY 1 cut(s) 600
PaeI GCATGC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 597
PctI GAATGC 2 cut(s) 258, 527
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 5 cut(s) 16, 52, 110, 329, 368
PkrI GCNGC 3 cut(s) 700, 1027, 1492
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 2 cut(s) 981, 1517
PpsI GAGTC 2 cut(s) 981, 1517
PpuMI RGGWCCY 1 cut(s) 1517
PshBI ATTAAT 1 cut(s) 830
Psp5II RGGWCCY 1 cut(s) 1517
PspN4I GGNNCC 3 cut(s) 415, 1034, 1498
PspPI GGNCC 7 cut(s) 403, 413, 1033, 1166, 1261, 1374, 1517
PspPPI RGGWCCY 1 cut(s) 1517
PstNI CAGNNNCTG 1 cut(s) 1493
PvuI CGATCG 1 cut(s) 45
RsaI GTAC 4 cut(s) 918, 961, 1196, 1505
RsaNI GTAC 4 cut(s) 917, 960, 1195, 1504
SaqAI TTAA 9 cut(s) 441, 461, 777, 830, 902, 966, 1098, 1173, 1230
SatI GCNGC 3 cut(s) 699, 1026, 1491
Sau3AI GATC 6 cut(s) 42, 46, 136, 790, 1017, 1311
Sau96I GGNCC 7 cut(s) 403, 413, 1033, 1166, 1261, 1374, 1517
SchI GAGTC 2 cut(s) 981, 1517
SduI GDGCHC 3 cut(s) 164, 1190, 1417
SfaNI GCATC 3 cut(s) 289, 844, 916
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 5 cut(s) 413, 1166, 1261, 1374, 1517
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SphI GCATGC 1 cut(s) 600
SsiI CCGC 3 cut(s) 150, 276, 1490
SspI AATATT 1 cut(s) 1276
SspMI CTAG 4 cut(s) 483, 755, 1125, 1527
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 5 cut(s) 80, 185, 413, 1215, 1465
TaiI ACGT 2 cut(s) 271, 582
TaqI TCGA 6 cut(s) 45, 108, 232, 561, 976, 1314
TatI WGTACW 1 cut(s) 916
TauI GCSGC 1 cut(s) 1493
TfiI GAWTC 5 cut(s) 16, 52, 110, 329, 368
Tru1I TTAA 9 cut(s) 441, 461, 777, 830, 902, 966, 1098, 1173, 1230
Tru9I TTAA 9 cut(s) 441, 461, 777, 830, 902, 966, 1098, 1173, 1230
TscAI CASTG 2 cut(s) 190, 1218
TseFI GTSAC 2 cut(s) 80, 568
TseI GCWGC 2 cut(s) 698, 1025
Tsp45I GTSAC 2 cut(s) 80, 568
TspDTI ATGAA 1 cut(s) 1527
TspGWI ACGGA 2 cut(s) 135, 955
TspRI CASTG 2 cut(s) 190, 1218
VpaK11BI GGWCC 5 cut(s) 413, 1166, 1261, 1374, 1517
VspI ATTAAT 1 cut(s) 830
XapI RAATTY 3 cut(s) 758, 953, 1252
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 2 cut(s) 1134, 1391
XspI CTAG 4 cut(s) 483, 755, 1125, 1527
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.