Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013596.1

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 1007

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013596.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgggtagctaccctcggattatggacagcaacaacaatacttatgaattgtttggtccagtgaacttgttttggagcactcgttatgacaaagcaatgacactgttcttgacatgccttaaggagtttgctgagtttgcgaattccaaggaccaagaaaacaacataccacctgaaaaatgttttaaattgccctacaaaattgagaatgataaggtggaaagctattctatcactcagagcttcaataagcaggagaattggaccaaagctctcaagtacaccctctgcaatttgaaatgggctctgtattggtttgttggaaatacaaacttccagcctctttctgcacttgtgtcttcacattctgaagttccaggtgtgagctctttgtacacaagacgtggtaacgactccaagttggagttccgaaactcatcacccatgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

8.38

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	281, 395
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	247, 298
AjiI	CACGTC	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	9, 225, 243, 272, 387
AluI	AGCT	5 cut(s)	9, 225, 243, 272, 387
Alw21I	GWGCWC	2 cut(s)	80, 389
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	56, 151, 264
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	3 cut(s)	56, 151, 264
BanII	GRGCYC	2 cut(s)	307, 389
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	80, 389
BciT130I	CCWGG	1 cut(s)	378
BfrI	CTTAAG	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	3 cut(s)	56, 151, 264
BmgBI	CACGTC	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	56, 151, 264
BmrFI	CCNGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	14, 147
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	14, 147
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	123, 251
BseNI	ACTGG	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	80, 389
Bsp1286I	GDGCHC	3 cut(s)	80, 307, 389
Bsp1407I	TGTACA	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	124, 250
BspTI	CTTAAG	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	14, 147
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	132, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	66, 101
Cfr13I	GGNCC	3 cut(s)	56, 151, 264
Csp6I	GTAC	2 cut(s)	280, 394
CviAII	CATG	2 cut(s)	114, 445
CviJI	RGCY	7 cut(s)	9, 225, 243, 272, 305, 340, 387
CviKI_1	RGCY	7 cut(s)	9, 225, 243, 272, 305, 340, 387
CviQI	GTAC	2 cut(s)	280, 394
DdeI	CTNAG	2 cut(s)	132, 237
DraI	TTTAAA	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	307, 389
Eco47I	GGWCC	3 cut(s)	56, 151, 264
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	307, 389
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	117, 448
FaiI	YATR	7 cut(s)	23, 45, 87, 115, 167, 446, 451
FatI	CATG	2 cut(s)	113, 444
FriOI	GRGCYC	2 cut(s)	307, 389
Hin1II	CATG	2 cut(s)	117, 448
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	64, 282, 396
Hpy188I	TCNGA	4 cut(s)	18, 240, 370, 431
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	3 cut(s)	64, 282, 396
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	291, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	132, 237
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	117, 448
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	72, 186, 239, 350, 363, 390
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	407
MboII	GAAGA	1 cut(s)	351
MhlI	GDGCHC	3 cut(s)	80, 307, 389
MluCI	AATT	6 cut(s)	47, 142, 188, 201, 259, 292
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	301, 402
MnlI	CCTC	3 cut(s)	24, 296, 351
MseI	TTAA	2 cut(s)	120, 186
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	117, 448
NspI	RCATGY	1 cut(s)	117
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspPI	GGNCC	3 cut(s)	56, 151, 264
RsaI	GTAC	2 cut(s)	281, 395
RsaNI	GTAC	2 cut(s)	280, 394
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	120, 186
Sau96I	GGNCC	3 cut(s)	56, 151, 264
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	3 cut(s)	80, 307, 389
SetI	ASST	9 cut(s)	11, 175, 219, 227, 245, 274, 382, 389, 406
SinI	GGWCC	3 cut(s)	56, 151, 264
SmlI	CTYRAG	2 cut(s)	119, 275
SmoI	CTYRAG	2 cut(s)	119, 275
Sse9I	AATT	6 cut(s)	47, 142, 188, 201, 259, 292
SstI	GAGCTC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	406
TasI	AATT	6 cut(s)	47, 142, 188, 201, 259, 292
TatI	WGTACW	2 cut(s)	279, 393
Tru1I	TTAA	2 cut(s)	120, 186
Tru9I	TTAA	2 cut(s)	120, 186
TscAI	CASTG	2 cut(s)	66, 108
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	66, 108
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	56, 151, 264
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.