Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Reverse (-)

51792752 .. 51796797

Gene Structure 4046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGTGAAAAGGGTCGGAGCTTTCCGGTGGATCCGAGTGTGCCCCGATGGGTCTGCCAGAATTGCCGCCACAACCTTTGCATCGTCGGCGCCGATTCCTACGCCGACAAGTTCTTCAGCGATTTCTCTCGTTCTGGCATGCAGGGCTCTTCGATGCATGGGGCGAGCAGTGTGCTGGCATCGAAGATGGACAATTCGTTTGTTTTGTTACCGCAAAGACCTCAGGCGCAGGGAGTCCCTCCTCGTCCTCGTGCTGGAGCAGGCAATGCAAGCCAGGCTGGGAAGGCAATGGATGAGTCCTTTGTGGTTGTTTATAAGTCTGAGTCCTCGGTGGATGGCGGTGGGGCCCAATTGCCGTCACCAGATGGAGGTCCTAATGGTCCTTTACAACCTAACAATTCTGGGTTTCACTCAACTATAACTCTCCTGAAACGGGCATTTGAAATTGCCACCACGCAAACACAAGTTGAGCAACCTTTATGCCTTGAATGCATGAAGGTATTGTCTGATAAACTTGACAAGGAGGTGGAAGATGTGAATAGAGACATTACGGCATACGAGTCATGTCTTAAACGGTTGGAGGGTGAAACAAGGGAAGTTCTTAGTGAGGCTGATTTTCTCAAGGAAAAGCTAAAGATTGAGGAAGAAGAGAGAAAACTCGAAGCAGCAATTGCAGAAATGGAGAAACAGAATGCAGAAGTTAATGCTGAACTGAAGGAACTTGACTTAAAATCTGGGCGATTTAAGGAATTAGAGGAGCGGTACTGGCAAGAGTTCAACACTTTCCAGTTTCAATTGATTTCAAATCAGGAAGAGAGAGATGCAATTTTAGCCAAGATTGAAGTTTCGCAGGCACATTTAGAGTTGTTGAAACGAACTAATGTGCTCAATGATGCCTTTCCTATCTGGCATGATGGAGAATTTGGAACCATTAACAATTTTCGGCTTGGACGACTTCCTAAAATTCCGGTCGAATGGGATGAGATAAATGCTGCCTGGGGTCAAGCCTGCCTTCTCCATACAATGTGTCAATACTTCCGGCCAAAATTTCAGTATCCTTTTCATGAGACACATCAAATTTGTTTATTAAGCTCTTGTGAAATTGACTTCTTGGTGATTTTTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

376

Amino Acids

42.4

Weight (kDa)

5.09

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG6_N	PF17675	159 - 287	1.1e-27	Apg6 coiled-coil region
APG6	PF04111	290 - 351	1e-24	Apg6 BARA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	760
AciI	CCGC	4 cut(s)	67, 212, 339, 760
AclWI	GGATC	2 cut(s)	26, 39
AcoI	YGGCCR	1 cut(s)	1040
AcsI	RAATTY	4 cut(s)	920, 963, 1046, 1077
AcuI	CTGAAG	2 cut(s)	100, 734
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	3 cut(s)	254, 368, 433
AgsI	TTSAA	8 cut(s)	443, 488, 778, 794, 804, 842, 871, 1127
AjnI	CCWGG	2 cut(s)	273, 995
AluBI	AGCT	3 cut(s)	21, 631, 1092
AluI	AGCT	3 cut(s)	21, 631, 1092
Alw21I	GWGCWC	1 cut(s)	888
Alw26I	GTCTC	2 cut(s)	537, 1061
AlwI	GGATC	2 cut(s)	26, 39
AoxI	GGCC	2 cut(s)	345, 1040
ApaI	GGGCCC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	665, 992
ApoI	RAATTY	4 cut(s)	920, 963, 1046, 1077
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	2 cut(s)	92, 229
AspS9I	GGNCC	4 cut(s)	345, 346, 371, 380
AsuHPI	GGTGA	4 cut(s)	17, 351, 596, 1126
AvaII	GGWCC	2 cut(s)	371, 380
AxyI	CCTNAGG	1 cut(s)	222
BaeGI	GKGCMC	2 cut(s)	45, 349
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	149, 349
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	888
BbvI	GCAGC	2 cut(s)	677, 979
BccI	CCATC	5 cut(s)	42, 181, 329, 359, 908
BceAI	ACGGC	2 cut(s)	340, 567
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 154, 188
BciT130I	CCWGG	2 cut(s)	275, 997
BciVI	GTATCC	1 cut(s)	1065
BcoDI	GTCTC	2 cut(s)	537, 1061
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	1065
BisI	GCNGC	3 cut(s)	67, 666, 993
BlsI	GCNGC	3 cut(s)	68, 667, 994
Bme1390I	CCNGG	2 cut(s)	275, 997
Bme18I	GGWCC	2 cut(s)	371, 380
BmgT120I	GGNCC	4 cut(s)	345, 346, 371, 380
BmiI	GGNNCC	5 cut(s)	33, 91, 346, 347, 928
BmrFI	CCNGG	2 cut(s)	275, 997
BmsI	GCATC	5 cut(s)	90, 144, 188, 811, 883
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	327, 996
BsaWI	WCCGGW	2 cut(s)	25, 967
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 368, 433
Bse1I	ACTGG	2 cut(s)	770, 787
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	2 cut(s)	271, 294
BseBI	CCWGG	2 cut(s)	275, 997
BseDI	CCNNGG	2 cut(s)	327, 996
BseGI	GGATG	3 cut(s)	298, 340, 985
BseLI	CCNNNNNNNGG	3 cut(s)	254, 368, 433
BseMI	GCAATG	2 cut(s)	271, 294
BseMII	CTCAG	2 cut(s)	236, 312
BseNI	ACTGG	2 cut(s)	770, 787
BseRI	GAGGAG	2 cut(s)	231, 770
BseSI	GKGCMC	2 cut(s)	45, 349
BseXI	GCAGC	2 cut(s)	677, 979
BseYI	CCCAGC	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	347, 1042
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	888
BsiSI	CCGG	3 cut(s)	26, 968, 1039
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	254, 368, 433
BsmAI	GTCTC	2 cut(s)	537, 1061
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	494, 697
BsnI	GGCC	2 cut(s)	347, 1042
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	4 cut(s)	45, 149, 349, 888
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	67, 212, 339, 760
BspANI	GGCC	2 cut(s)	347, 1042
BspCNI	CTCAG	2 cut(s)	235, 313
BspHI	TCATGA	1 cut(s)	1063
BspLI	GGNNCC	5 cut(s)	33, 91, 346, 347, 928
BspPI	GGATC	2 cut(s)	26, 39
BspQI	GCTCTTC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	760
BsrDI	GCAATG	2 cut(s)	271, 294
BsrI	ACTGG	2 cut(s)	770, 787
BssECI	CCNNGG	2 cut(s)	327, 996
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	275, 997
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	3 cut(s)	154, 642, 807
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	2 cut(s)	266, 671
BstC8I	GCNNGC	7 cut(s)	140, 166, 177, 262, 271, 852, 1009
BstDEI	CTNAG	3 cut(s)	222, 321, 602
BstF5I	GGATG	3 cut(s)	298, 340, 985
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 229
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	537, 1061
BstMBI	GATC	1 cut(s)	31
BstMCI	CGRYCG	1 cut(s)	972
BstNI	CCWGG	2 cut(s)	275, 997
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	273, 995
BstSLI	GKGCMC	2 cut(s)	45, 349
BstV1I	GCAGC	2 cut(s)	677, 979
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	1065
BsuRI	GGCC	2 cut(s)	347, 1042
BtsCI	GGATG	3 cut(s)	298, 340, 985
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	7 cut(s)	140, 166, 177, 262, 271, 852, 1009
CciI	TCATGA	1 cut(s)	1063
CfoI	GCGC	2 cut(s)	92, 229
Cfr13I	GGNCC	4 cut(s)	345, 346, 371, 380
Csp6I	GTAC	1 cut(s)	763
CspCI	CAANNNNNGTGG	2 cut(s)	59, 94
CviAII	CATG	6 cut(s)	139, 158, 493, 564, 911, 1064
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	3 cut(s)	222, 321, 602
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	1040
Eam1104I	CTCTTC	3 cut(s)	154, 642, 807
EarI	CTCTTC	3 cut(s)	154, 642, 807
Eco24I	GRGCYC	2 cut(s)	149, 349
Eco47I	GGWCC	2 cut(s)	371, 380
Eco57I	CTGAAG	2 cut(s)	100, 734
Eco81I	CCTNAGG	1 cut(s)	222
EcoO109I	RGGNCCY	2 cut(s)	345, 371
EcoRII	CCWGG	2 cut(s)	273, 995
EcoT22I	ATGCAT	2 cut(s)	159, 494
EcoT38I	GRGCYC	2 cut(s)	149, 349
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	6 cut(s)	142, 161, 496, 567, 914, 1067
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	6 cut(s)	138, 157, 492, 563, 910, 1063
Fnu4HI	GCNGC	3 cut(s)	67, 666, 993
FokI	GGATG	3 cut(s)	305, 347, 992
FriOI	GRGCYC	2 cut(s)	149, 349
Fsp4HI	GCNGC	3 cut(s)	67, 666, 993
GlaI	GCGC	2 cut(s)	91, 228
GluI	GCNGC	3 cut(s)	67, 666, 993
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	347, 1042
HapII	CCGG	3 cut(s)	26, 968, 1039
HhaI	GCGC	2 cut(s)	92, 229
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	142, 161, 496, 567, 914, 1067
Hin6I	GCGC	2 cut(s)	90, 227
HinP1I	GCGC	2 cut(s)	90, 227
HinfI	GANTC	5 cut(s)	95, 234, 296, 323, 560
HpaII	CCGG	3 cut(s)	26, 968, 1039
HphI	GGTGA	4 cut(s)	17, 351, 596, 1126
Hpy188I	TCNGA	4 cut(s)	18, 36, 322, 508
Hpy188III	TCNNGA	3 cut(s)	427, 809, 1064
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	277, 490, 709, 1022
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	8 cut(s)	81, 142, 157, 269, 492, 674, 695, 824
HpyF3I	CTNAG	3 cut(s)	222, 321, 602
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	142, 161, 496, 567, 914, 1067
HspAI	GCGC	2 cut(s)	90, 227
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	3 cut(s)	18, 257, 757
Lsp1109I	GCAGC	2 cut(s)	677, 979
LweI	GCATC	5 cut(s)	90, 144, 188, 811, 883
MaeIII	GTNAC	2 cut(s)	207, 357
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	760
MboI	GATC	1 cut(s)	31
MboII	GAAGA	7 cut(s)	106, 141, 196, 542, 656, 659, 824
MfeI	CAATTG	3 cut(s)	350, 669, 794
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	4 cut(s)	45, 149, 349, 888
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	4 cut(s)	243, 305, 332, 569
MmeI	TCCRAC	1 cut(s)	558
Mph1103I	ATGCAT	2 cut(s)	159, 494
MseI	TTAA	6 cut(s)	570, 702, 728, 744, 933, 1088
MspI	CCGG	3 cut(s)	26, 968, 1039
MspR9I	CCNGG	2 cut(s)	275, 997
MunI	CAATTG	3 cut(s)	350, 669, 794
Mva1269I	GAATGC	2 cut(s)	494, 697
MvaI	CCWGG	2 cut(s)	275, 997
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	6 cut(s)	142, 161, 496, 567, 914, 1067
NlaIV	GGNNCC	5 cut(s)	33, 91, 346, 347, 928
NmuCI	GTSAC	1 cut(s)	357
NsiI	ATGCAT	2 cut(s)	159, 494
NspI	RCATGY	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	1063
PciSI	GCTCTTC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 949
PctI	GAATGC	2 cut(s)	494, 697
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	68, 667, 994
PleI	GAGTC	4 cut(s)	242, 304, 331, 568
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	4 cut(s)	242, 304, 331, 568
PpuMI	RGGWCCY	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	273, 995
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	273, 995
PspN4I	GGNNCC	5 cut(s)	33, 91, 346, 347, 928
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	4 cut(s)	345, 346, 371, 380
PspPPI	RGGWCCY	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	6 cut(s)	570, 702, 728, 744, 933, 1088
SatI	GCNGC	3 cut(s)	67, 666, 993
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	4 cut(s)	345, 346, 371, 380
SchI	GAGTC	4 cut(s)	243, 305, 332, 569
ScrFI	CCNGG	2 cut(s)	275, 997
SduI	GDGCHC	4 cut(s)	45, 149, 349, 888
SfaNI	GCATC	5 cut(s)	90, 144, 188, 811, 883
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	371, 380
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SphI	GCATGC	1 cut(s)	142
SsiI	CCGC	4 cut(s)	67, 212, 339, 760
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	273, 995
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	4 cut(s)	152, 182, 660, 972
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	6 cut(s)	570, 702, 728, 744, 933, 1088
Tru9I	TTAA	6 cut(s)	570, 702, 728, 744, 933, 1088
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	2 cut(s)	665, 992
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	509, 1052
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	371, 380
XapI	RAATTY	4 cut(s)	920, 963, 1046, 1077
XceI	RCATGY	1 cut(s)	142
Zsp2I	ATGCAT	2 cut(s)	159, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.