Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Reverse (-)

16821112 .. 16822244

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGCGAAAGGGGTCGGAGCTTCCAGGTGGATCCGAACGTCCCCAGATATGTCTGCCAGAACTGCCGCAACTCTCTCTGCGTCATCGGCGCCGATTCCTACGCCGAAAAGTTCTTCCACGATTTCTCTCGCTCCGGTATGCAGGGGATGAGTCCTTTGTGGTTGTTAATAAGTCTGAGTCCTCAGCGGATGGTGGTGGGGCTCATTTGCCATCACCTGATGGAGGACCCAATGGTCCTTTGCAGCCTAACAATTCTGGCTTTCACTCTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

6.8

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	67, 187
AclWI	GGATC	2 cut(s)	26, 39
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AlwI	GGATC	2 cut(s)	26, 39
ApeKI	GCWGC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	226, 235
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	226, 235
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	3 cut(s)	184, 214, 219
BciT130I	CCWGG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	67, 244
BlsI	GCNGC	2 cut(s)	68, 245
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	226, 235
BmgT120I	GGNCC	2 cut(s)	226, 235
BmiI	GGNNCC	3 cut(s)	33, 91, 228
BmrFI	CCNGG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	153, 195
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	167, 197
BseXI	GCAGC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	67, 187
BspCNI	CTCAG	2 cut(s)	168, 196
BspLI	GGNNCC	3 cut(s)	33, 91, 228
BspPI	GGATC	2 cut(s)	26, 39
BspT107I	GGYRCC	1 cut(s)	89
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	176, 183
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	153, 195
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 87
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	153, 195
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	226, 235
CseI	GACGC	1 cut(s)	70
CviJI	RGCY	4 cut(s)	21, 202, 246, 260
CviKI_1	RGCY	4 cut(s)	21, 202, 246, 260
DdeI	CTNAG	2 cut(s)	176, 183
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	226, 235
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaiI	YATR	3 cut(s)	51, 140, 274
FaqI	GGGAC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	67, 244
FokI	GGATG	2 cut(s)	160, 202
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	67, 244
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	67, 244
HaeII	RGCGCY	1 cut(s)	93
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	95, 151, 178
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	18, 36, 177
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	142, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 87
HpyF3I	CTNAG	2 cut(s)	176, 183
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	18, 137
LpnPI	CCDG	8 cut(s)	11, 38, 58, 71, 128, 148, 230, 242
Lsp1109I	GCAGC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	39
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	252
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	160, 187
MnlI	CCTC	2 cut(s)	192, 217
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	63, 87
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	31
NlaIV	GGNNCC	3 cut(s)	33, 91, 228
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	68, 245
PleI	GAGTC	2 cut(s)	159, 186
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	159, 186
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	33, 91, 228
PspPI	GGNCC	2 cut(s)	226, 235
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	2 cut(s)	67, 244
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	226, 235
SchI	GAGTC	2 cut(s)	160, 187
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	4 cut(s)	23, 30, 42, 219
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	226, 235
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	67, 187
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	42
TasI	AATT	1 cut(s)	252
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	226, 235
XagI	CCTNNNNNAGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.