Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Reverse (-)

38269254 .. 38270121

Gene Structure 868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTTGGTTCACAACCTCACTGAGCTTTCTCAGTTATATCTTGATGGTGTCCTAATATCAGAACAGGGGAGTGAGTTATGCCGAGCCATATCATCTTCCATTCCCAACCTCCAGGTCTTGAGCATGTCCTATTGTGATCTTTCAGGCCCTCTTCTCGAGTCCCTTGGTCAGCTTCAATCTTTATCCGAAATTAGGTTGGACGGGAACAATATCTCTGAGCCAGTTCCAGGTTTCTTTGCCAACTTTTCAAACTTGACTATCTTGAGTCTCCAAGGATGCAGGTTGCATGGAACATTACCCAAAGTGATCTTTCACTTACCTTCTCTACAGTATATTGACCTTTCATATAATGACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGGATCTCTTGAGTACCTGTATCGATCTAACCTTGACAAAATTTTCAGGAGTTGCAATTTCAAAGGACTGATTCCCAAGTCAATCAAAAACCATACACAATTGGTTTCTTTGTCAATGTCTGGTAACAAGTTGGAAGGTTCAATTCCGTCATTTAGTGGGGCCAAGAATGTTGTCAACATAGACCTTTCCGACAATGGTCTAACAGGTACTATCAACTTCAGCCACTGGAGAAACCTTACTAAGCTGTCTTCTCTCATTTTGAGCTCTAACAAGCTCGATGGGGATGTCCCAGCGTCTTTGTTTTATCTTCCCCTATTGTATCATCTAGATCTTTCTCTCTCTTCTTTTGTCCACATGTCAGTTTACGATTCGATAAAATTTAGTATATTATTTACAAATAAAGCAACATTGTTAAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

270

Amino Acids

29.85

Weight (kDa)

5.95

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	60 - 118	7e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	389
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	377, 429, 767
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	404, 598
AfiI	CCNNNNNNNGG	3 cut(s)	192, 227, 389
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	176, 249, 451, 531
AjnI	CCWGG	2 cut(s)	111, 226
AluBI	AGCT	5 cut(s)	25, 172, 634, 654, 664
AluI	AGCT	5 cut(s)	25, 172, 634, 654, 664
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	145, 549
ApoI	RAATTY	3 cut(s)	377, 429, 767
AspS9I	GGNCC	2 cut(s)	146, 549
AvaI	CYCGRG	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	656
BccI	CCATC	3 cut(s)	38, 356, 662
BciT130I	CCWGG	2 cut(s)	113, 228
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	718
Bme1390I	CCNGG	2 cut(s)	113, 228
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	146, 549
BmiI	GGNNCC	2 cut(s)	367, 550
BmrFI	CCNGG	2 cut(s)	113, 228
BmsI	GCATC	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	2 cut(s)	95, 637
BpuEI	CTTGAG	3 cut(s)	139, 283, 419
Bsa29I	ATCGAT	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	163, 271, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 227, 389
Bse1I	ACTGG	2 cut(s)	221, 620
BseBI	CCWGG	2 cut(s)	113, 228
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	163, 271, 383
BseGI	GGATG	2 cut(s)	281, 679
BseLI	CCNNNNNNNGG	3 cut(s)	192, 227, 389
BseMII	CTCAG	3 cut(s)	12, 44, 207
BseNI	ACTGG	2 cut(s)	221, 620
BseYI	CCCAGC	1 cut(s)	679
BshFI	GGCC	2 cut(s)	147, 551
BshVI	ATCGAT	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	656
BsiHKCI	CYCGRG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	145, 662
BslI	CCNNNNNNNGG	3 cut(s)	192, 227, 389
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	145, 662
BsnI	GGCC	2 cut(s)	147, 551
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	5 cut(s)	136, 306, 392, 413, 718
BspANI	GGCC	2 cut(s)	147, 551
BspCNI	CTCAG	3 cut(s)	13, 43, 208
BspDI	ATCGAT	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	367, 550
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	221, 620
BssECI	CCNNGG	3 cut(s)	163, 271, 383
BssMI	GATC	5 cut(s)	136, 306, 392, 413, 718
BssT1I	CCWWGG	3 cut(s)	163, 271, 383
Bst2UI	CCWGG	2 cut(s)	113, 228
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	156, 736
BstDEI	CTNAG	4 cut(s)	21, 30, 216, 630
BstF5I	GGATG	2 cut(s)	281, 679
BstKTI	GATC	5 cut(s)	139, 309, 395, 416, 721
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	136, 306, 392, 413, 718
BstNI	CCWGG	2 cut(s)	113, 228
BstNSI	RCATGY	2 cut(s)	127, 748
BstPAI	GACNNNNGTC	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	111, 226
BstSFI	CTRYAG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	2 cut(s)	392, 718
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	2 cut(s)	392, 718
Bsu15I	ATCGAT	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	147, 551
BsuTUI	ATCGAT	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	281, 679
BtsIMutI	CAGTG	2 cut(s)	18, 613
BveI	ACCTGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	615
Cfr13I	GGNCC	2 cut(s)	146, 549
ClaI	ATCGAT	1 cut(s)	412
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	403, 597
CviAII	CATG	3 cut(s)	124, 287, 745
CviQI	GTAC	2 cut(s)	403, 597
DdeI	CTNAG	4 cut(s)	21, 30, 216, 630
DpnI	GATC	5 cut(s)	138, 308, 394, 415, 720
DpnII	GATC	5 cut(s)	136, 306, 392, 413, 718
Eam1104I	CTCTTC	2 cut(s)	156, 736
EarI	CTCTTC	2 cut(s)	156, 736
Ecl136II	GAGCTC	1 cut(s)	654
Eco130I	CCWWGG	3 cut(s)	163, 271, 383
Eco24I	GRGCYC	1 cut(s)	656
Eco53kI	GAGCTC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	592
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	111, 226
EcoT14I	CCWWGG	3 cut(s)	163, 271, 383
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	3 cut(s)	163, 271, 383
FaeI	CATG	3 cut(s)	127, 290, 748
FaqI	GGGAC	2 cut(s)	145, 662
FatI	CATG	3 cut(s)	123, 286, 744
FokI	GGATG	2 cut(s)	288, 686
FriOI	GRGCYC	1 cut(s)	656
FspBI	CTAG	1 cut(s)	716
GsaI	CCCAGC	1 cut(s)	683
GsuI	CTGGAG	2 cut(s)	95, 637
HaeIII	GGCC	2 cut(s)	147, 551
HgaI	GACGC	1 cut(s)	672
Hin1II	CATG	3 cut(s)	127, 290, 748
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	4 cut(s)	158, 265, 460, 758
Hpy166II	GTNNAC	4 cut(s)	10, 565, 742, 754
Hpy188I	TCNGA	4 cut(s)	61, 187, 217, 580
Hpy188III	TCNNGA	7 cut(s)	41, 118, 155, 262, 398, 436, 716
Hpy8I	GTNNAC	4 cut(s)	10, 565, 742, 754
HpyAV	CCTTC	2 cut(s)	330, 518
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	279, 286, 444
HpyF3I	CTNAG	4 cut(s)	21, 30, 216, 630
Hsp92II	CATG	3 cut(s)	127, 290, 748
Kzo9I	GATC	5 cut(s)	136, 306, 392, 413, 718
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	5 cut(s)	138, 308, 394, 415, 720
MboI	GATC	5 cut(s)	136, 306, 392, 413, 718
MboII	GAAGA	5 cut(s)	87, 143, 630, 689, 723
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	2 cut(s)	392, 718
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	7 cut(s)	189, 377, 429, 445, 488, 531, 767
MlyI	GAGTC	2 cut(s)	167, 274
MmeI	TCCRAC	3 cut(s)	177, 501, 603
MnlI	CCTC	3 cut(s)	26, 119, 159
MseI	TTAA	1 cut(s)	803
MspR9I	CCNGG	2 cut(s)	113, 228
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	113, 228
NdeII	GATC	5 cut(s)	136, 306, 392, 413, 718
NlaIII	CATG	3 cut(s)	127, 290, 748
NlaIV	GGNNCC	2 cut(s)	367, 550
NmeAIII	GCCGAG	1 cut(s)	107
NspI	RCATGY	2 cut(s)	127, 748
PaeR7I	CTCGAG	1 cut(s)	155
PciI	ACATGT	1 cut(s)	744
PfeI	GAWTC	2 cut(s)	460, 758
PflMI	CCANNNNNTGG	1 cut(s)	389
PleI	GAGTC	2 cut(s)	166, 273
PpsI	GAGTC	2 cut(s)	166, 273
PscI	ACATGT	1 cut(s)	744
PshAI	GACNNNNGTC	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	111, 226
PspFI	CCCAGC	1 cut(s)	679
PspGI	CCWGG	2 cut(s)	111, 226
PspN4I	GGNNCC	2 cut(s)	367, 550
PspPI	GGNCC	2 cut(s)	146, 549
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	392, 718
RsaI	GTAC	2 cut(s)	404, 598
RsaNI	GTAC	2 cut(s)	403, 597
SacI	GAGCTC	1 cut(s)	656
SaqAI	TTAA	1 cut(s)	803
Sau3AI	GATC	5 cut(s)	136, 306, 392, 413, 718
Sau96I	GGNCC	2 cut(s)	146, 549
SchI	GAGTC	2 cut(s)	167, 274
ScrFI	CCNGG	2 cut(s)	113, 228
SduI	GDGCHC	1 cut(s)	656
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	326
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	4 cut(s)	118, 155, 262, 398
SmoI	CTYRAG	4 cut(s)	118, 155, 262, 398
Sse9I	AATT	7 cut(s)	189, 377, 429, 445, 488, 531, 767
SspMI	CTAG	1 cut(s)	716
SstI	GAGCTC	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	111, 226
StyI	CCWWGG	3 cut(s)	163, 271, 383
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	156, 412, 666, 761
TasI	AATT	7 cut(s)	189, 377, 429, 445, 488, 531, 767
TfiI	GAWTC	2 cut(s)	460, 758
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TscAI	CASTG	2 cut(s)	25, 620
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	25, 620
Van91I	CCANNNNNTGG	1 cut(s)	389
XapI	RAATTY	3 cut(s)	377, 429, 767
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	2 cut(s)	127, 748
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.