Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000332.1

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1789

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

gttgagcaacctttatgccttgaatgcatgaaggtattgtctgataaacttgacaaggaggtggaagatgtgaatagagacattacggcatacgagtcatgtcttaaacggttggagggtgaaacaagggaagttcttagtgaggctgattttctcaaggaaaagctaaagattgaggaagaagagagaaaactcgaagcagcaattgcagaaatggagaaacagaatgcagaagttaatgctgaactgagggaacttgacttaaaatctgggcgatttaaggaattagaggagcggtactggcacgagttcaacactttccagtttcaattgatttcaaatcaggaagagagagatgcaattttggccaagattgaagtttcgcaggcacatttagagttgttgaaacgaactaatgtgctcaatgatgcctttcctatctggcatgatggagaatttggaaccattaacaattttcggcttggacgacttcctaaaattccggtcgaatgggatgagataaatgctgcctggggtcaagcctgccttctcctccatacaatgtgtcaatacttccggccaaaatttcaatatcgaattaaaatacttcctatgggtagctaccctcggattatggacagcaacaacaatacttatgaattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

221

Amino Acids

26.1

Weight (kDa)

4.93

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	1 cut(s)	295
AcoI	YGGCCR	2 cut(s)	366, 578
AcsI	RAATTY	3 cut(s)	455, 498, 584
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	7 cut(s)	23, 313, 329, 339, 377, 406, 590
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	166, 621
AluI	AGCT	2 cut(s)	166, 621
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	366, 578
ApeKI	GCWGC	2 cut(s)	200, 527
ApoI	RAATTY	3 cut(s)	455, 498, 584
AsuHPI	GGTGA	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	368
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	212, 514
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	201, 528
BlsI	GCNGC	2 cut(s)	202, 529
Bme1390I	CCNGG	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	2 cut(s)	346, 418
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	531, 626
BsaWI	WCCGGW	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	305, 322
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	531, 626
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	305, 322
BseRI	GAGGAG	2 cut(s)	305, 542
BseXI	GCAGC	2 cut(s)	212, 514
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	368, 580
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	503, 577
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	29, 232
BsnI	GGCC	2 cut(s)	368, 580
Bsp1286I	GDGCHC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	368, 580
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	305, 322
BssECI	CCNNGG	2 cut(s)	531, 626
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	177, 342
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	387, 544
BstDEI	CTNAG	2 cut(s)	137, 248
BstF5I	GGATG	1 cut(s)	520
BstMAI	GTCTC	1 cut(s)	72
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 206, 301, 365
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	212, 514
BsuRI	GGCC	2 cut(s)	368, 580
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	387, 544
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	3 cut(s)	28, 99, 446
CviJI	RGCY	7 cut(s)	146, 166, 368, 481, 542, 580, 621
CviKI_1	RGCY	7 cut(s)	146, 166, 368, 481, 542, 580, 621
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	137, 248
EaeI	YGGCCR	2 cut(s)	366, 578
Eam1104I	CTCTTC	2 cut(s)	177, 342
EarI	CTCTTC	2 cut(s)	177, 342
EcoRII	CCWGG	1 cut(s)	530
EcoT22I	ATGCAT	1 cut(s)	29
FaeI	CATG	3 cut(s)	31, 102, 449
FaiI	YATR	9 cut(s)	16, 29, 91, 100, 447, 558, 614, 635, 657
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	3 cut(s)	27, 98, 445
Fnu4HI	GCNGC	2 cut(s)	201, 528
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	201, 528
GluI	GCNGC	2 cut(s)	201, 528
HaeIII	GGCC	2 cut(s)	368, 580
HapII	CCGG	2 cut(s)	503, 577
Hin1II	CATG	3 cut(s)	31, 102, 449
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	503, 577
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	43, 630
Hpy188III	TCNNGA	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	25, 557
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	27, 209, 230, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 206, 301, 365
HpyF3I	CTNAG	2 cut(s)	137, 248
Hsp92II	CATG	3 cut(s)	31, 102, 449
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	212, 514
LweI	GCATC	2 cut(s)	346, 418
MbiI	CCGCTC	1 cut(s)	295
MboII	GAAGA	4 cut(s)	77, 191, 194, 359
MfeI	CAATTG	2 cut(s)	204, 329
MhlI	GDGCHC	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	52, 109, 136, 169, 243, 283, 563, 636
Mox20I	TGGCCA	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	6 cut(s)	105, 237, 263, 279, 468, 600
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	2 cut(s)	503, 577
MspR9I	CCNGG	1 cut(s)	532
MunI	CAATTG	2 cut(s)	204, 329
Mva1269I	GAATGC	2 cut(s)	29, 232
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	4 cut(s)	24, 206, 301, 365
NlaIII	CATG	3 cut(s)	31, 102, 449
NlaIV	GGNNCC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	2 cut(s)	29, 232
PkrI	GCNGC	2 cut(s)	202, 529
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	6 cut(s)	105, 237, 263, 279, 468, 600
SatI	GCNGC	2 cut(s)	201, 528
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	5 cut(s)	13, 36, 63, 168, 623
SfaNI	GCATC	2 cut(s)	346, 418
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SsiI	CCGC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	195, 507, 595
Tru1I	TTAA	6 cut(s)	105, 237, 263, 279, 468, 600
Tru9I	TTAA	6 cut(s)	105, 237, 263, 279, 468, 600
TseI	GCWGC	2 cut(s)	200, 527
TspDTI	ATGAA	1 cut(s)	44
XapI	RAATTY	3 cut(s)	455, 498, 584
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.