Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017222.1

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 551

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017222.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

aattgagaatgataaggtggaaagctattctatcactcagagcttcaataagcaggagaattggaccaaagctctcaagtacaccctctgcaatttgaaatgggctctgtattggtttgttggaaatacaaacttccagcctctttctgcacttgtgtcttcacattctgaagttccaggtgtgagctctttgtacacaagacgtggtaacgactccaagttggagttccgaaactcatcacccatgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

83

Amino Acids

9.55

Weight (kDa)

8.83

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	2 cut(s)	81, 195
AgsI	TTSAA	2 cut(s)	47, 98
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	25, 43, 72, 187
AluI	AGCT	4 cut(s)	25, 43, 72, 187
Alw21I	GWGCWC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	64
BanII	GRGCYC	2 cut(s)	107, 189
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	107, 189
Bsp1407I	TGTACA	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	80, 194
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	6 cut(s)	25, 43, 72, 105, 140, 187
CviKI_1	RGCY	6 cut(s)	25, 43, 72, 105, 140, 187
CviQI	GTAC	2 cut(s)	80, 194
DdeI	CTNAG	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	107, 189
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	2 cut(s)	107, 189
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	246, 251
FatI	CATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	107, 189
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	1 cut(s)	213
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	82, 196
Hpy188I	TCNGA	3 cut(s)	40, 170, 231
Hpy8I	GTNNAC	2 cut(s)	82, 196
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	91, 150
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	248
LpnPI	CCDG	4 cut(s)	39, 150, 163, 190
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	107, 189
MluCI	AATT	2 cut(s)	59, 92
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	101, 202
MnlI	CCTC	2 cut(s)	96, 151
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
NlaIII	CATG	1 cut(s)	248
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	81, 195
RsaNI	GTAC	2 cut(s)	80, 194
SacI	GAGCTC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	107, 189
SetI	ASST	7 cut(s)	19, 27, 45, 74, 182, 189, 206
SgeI	CNNG	9 cut(s)	66, 89, 149, 165, 189, 190, 211, 216, 230
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	59, 92
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	176
TaiI	ACGT	1 cut(s)	206
TasI	AATT	2 cut(s)	59, 92
TatI	WGTACW	2 cut(s)	79, 193
VpaK11BI	GGWCC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.