Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005026

Physical Location & Seq

Genomic Coordinates Reverse (-)

11605451 .. 11608134

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10810.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGCGAAAGGGGTCGGAGCTTTCAGGTGGATCCGAACGTCCCAAGATATGCATGCCAGAACTGCCGTAACTATCTCTGCGTCGTCGGCGCCGATTCCTACGCCGAACAATTCTTCCACGATTTCTCTCGCTCCGGCATGCAGGATGAGTCCTTTGTGGTTGTTTATAAATCTGAGTCCTCAGCGGATGGTGGTGGGGTCCATTTGCCGTTACCTGATGCAGGACCCAATGGTCCTTTGCAGCCTAACAATTCTGGGTTTCACTCTACTATAACTCTCCTGGATCGTGCATTTGAAATTGCCACCACCCAAACACTGGTTGAGCAACCTTTATGCATTGAATGCATGAGGGTATTGTTTGATAAACTTGACAAGGAGGTTGAAGATGTGAATAGGGACATTAAAGCATACGAAGCCTGTCTTAAACGCTTGGAGGGTGAGACAAGGGAAGTGCTTGGTGAGACTGATTTTCTCAAGGGAAAACTGAAGATTGAGGAAGAGGAGAGAAAACTTGAAGCAGCAATTGAAGAGATGGAGAAACAGAATGCAGAAGTAAATAATGAACTCAAGGGACTTGAGTTAAAATCTAGCAGATTTAAGGAGTTGGAGGAGCGGTACTGGCACGAGTTCAATATTTTTCAGTTTCAATTAATTTTGAATCAGGAAAAAAGAGATGCAATTTTGGCCAAAATAGAAGTTTCACAAGCACACTTAGAGTTGTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000045 GO:0000407 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005942 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0006996 GO:0007033 GO:0007034 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009620 GO:0009846 GO:0009856 GO:0009987 GO:0009991 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0019898 GO:0022414 GO:0022607 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031982 GO:0032501 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034271 GO:0034272 GO:0034613 GO:0035032 GO:0042594 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043562 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044706 GO:0044804 GO:0045184 GO:0045324 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061695 GO:0061919 GO:0070727 GO:0070925 GO:0071496 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098542 GO:0098796 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 ko04215 ko04371 ko05167 map04136 map04137 map04138 map04140 map04215 map04371 map05167

Pfam Domains

Protein Families

APG6

Protein Analysis

243

Amino Acids

27.74

Weight (kDa)

4.88

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61710 AT3G61710 AT3G61710 AT3G61710
fragaria_vesca	FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330 FvH4_7g16330
malus_domestica	MD01G1079900.v1.1 MD07G1148700.v1.1
prunus_persica	Prupe.2G187200_v2.0.a1
pyrus_communis	pycom01g10810 pycom07g14770
rosa_chinensis	RchiOBHm_Chr1g0359341
rosa_laevigata	RLG00000027878
rosa_multiflora	Rmu_sc0013596.1_g000001 Rmu_sc0017222.1_g000001 Rmu_ssc0000332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297080
rosa_rugosa	Rorug01G0270200
rosa_samantha	Rh1AG283700 Rh1BG249900 Rh1CG267800 Rh1DG278800
rosa_wichuraiana	Rw1G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AasI	GACNNNNNNGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	613
AciI	CCGC	2 cut(s)	185, 613
AclWI	GGATC	3 cut(s)	26, 39, 291
AcoI	YGGCCR	1 cut(s)	684
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	2 cut(s)	221, 316
AgsI	TTSAA	9 cut(s)	296, 341, 383, 515, 527, 631, 647, 658, 724
AjnI	CCWGG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	434, 455
AlwI	GGATC	3 cut(s)	26, 39, 291
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	241, 518
AseI	ATTAAT	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	199, 224, 233
AsuHPI	GGTGA	2 cut(s)	449, 470
AvaII	GGWCC	3 cut(s)	199, 224, 233
BalI	TGGCCA	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	623
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	253, 530
BccI	CCATC	2 cut(s)	182, 526
BceAI	ACGGC	2 cut(s)	51, 193
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	434, 455
BfaI	CTAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	242, 519
BlsI	GCNGC	2 cut(s)	243, 520
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	3 cut(s)	199, 224, 233
BmgT120I	GGNCC	3 cut(s)	199, 224, 233
BmiI	GGNNCC	4 cut(s)	33, 91, 200, 226
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	208, 664
Bpu10I	CCTNAGC	1 cut(s)	181
BpuEI	CTTGAG	3 cut(s)	458, 551, 596
BsaHI	GRCGYC	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 316
Bse1I	ACTGG	2 cut(s)	321, 623
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	151, 193
BseLI	CCNNNNNNNGG	2 cut(s)	221, 316
BseMII	CTCAG	2 cut(s)	165, 195
BseNI	ACTGG	2 cut(s)	321, 623
BseRI	GAGGAG	2 cut(s)	515, 623
BseXI	GCAGC	2 cut(s)	253, 530
BshFI	GGCC	1 cut(s)	686
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	3 cut(s)	26, 410, 585
BslI	CCNNNNNNNGG	2 cut(s)	221, 316
BsmAI	GTCTC	2 cut(s)	434, 455
BsmFI	GGGAC	3 cut(s)	26, 410, 585
BsmI	GAATGC	2 cut(s)	347, 550
BsnI	GGCC	1 cut(s)	686
Bsp143I	GATC	2 cut(s)	31, 283
BspACI	CCGC	2 cut(s)	185, 613
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	2 cut(s)	166, 194
BspLI	GGNNCC	4 cut(s)	33, 91, 200, 226
BspPI	GGATC	3 cut(s)	26, 39, 291
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	321, 623
BssMI	GATC	2 cut(s)	31, 283
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	492, 522
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	55, 140
BstDEI	CTNAG	3 cut(s)	174, 181, 712
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	151, 193
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	34, 286
BstMAI	GTCTC	2 cut(s)	434, 455
BstMBI	GATC	2 cut(s)	31, 283
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 87, 342, 413, 619, 683
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	57, 142
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	253, 530
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	151, 193
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	55, 140
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	199, 224, 233
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	3 cut(s)	54, 139, 346
CviJI	RGCY	4 cut(s)	21, 244, 416, 686
CviKI_1	RGCY	4 cut(s)	21, 244, 416, 686
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	3 cut(s)	174, 181, 712
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	2 cut(s)	33, 285
DpnII	GATC	2 cut(s)	31, 283
DrdI	GACNNNNNNGTC	1 cut(s)	231
DseDI	GACNNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	2 cut(s)	492, 522
EarI	CTCTTC	2 cut(s)	492, 522
Eco47I	GGWCC	3 cut(s)	199, 224, 233
Eco57I	CTGAAG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	3 cut(s)	55, 338, 347
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	3 cut(s)	57, 142, 349
FaiI	YATR	8 cut(s)	51, 55, 140, 168, 272, 334, 347, 409
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	3 cut(s)	26, 410, 585
FatI	CATG	3 cut(s)	53, 138, 345
Fnu4HI	GCNGC	2 cut(s)	242, 519
FokI	GGATG	2 cut(s)	158, 200
Fsp4HI	GCNGC	2 cut(s)	242, 519
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	242, 519
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	57, 142, 349
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	95, 149, 176, 658
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	449, 470
Hpy188I	TCNGA	3 cut(s)	18, 36, 175
Hpy188III	TCNNGA	1 cut(s)	662
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	9 cut(s)	53, 142, 221, 241, 290, 336, 345, 548, 677
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 87, 342, 413, 619, 683
HpyF3I	CTNAG	3 cut(s)	174, 181, 712
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	57, 142, 349
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	31, 283
LmnI	GCTCC	3 cut(s)	18, 137, 610
Lsp1109I	GCAGC	2 cut(s)	253, 530
LweI	GCATC	2 cut(s)	208, 664
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	68, 210
MalI	GATC	2 cut(s)	33, 285
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	2 cut(s)	31, 283
MboII	GAAGA	5 cut(s)	106, 395, 499, 509, 539
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	686
MluCI	AATT	7 cut(s)	110, 250, 297, 522, 647, 651, 678
MluNI	TGGCCA	1 cut(s)	686
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	158, 185
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	7 cut(s)	190, 342, 370, 427, 487, 493, 601
Mox20I	TGGCCA	1 cut(s)	686
Mph1103I	ATGCAT	3 cut(s)	55, 338, 347
MscI	TGGCCA	1 cut(s)	686
MseI	TTAA	5 cut(s)	402, 423, 581, 597, 650
Msp20I	TGGCCA	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	2 cut(s)	347, 550
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	6 cut(s)	63, 87, 342, 413, 619, 683
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	2 cut(s)	31, 283
NlaIII	CATG	3 cut(s)	57, 142, 349
NlaIV	GGNNCC	4 cut(s)	33, 91, 200, 226
NsiI	ATGCAT	3 cut(s)	55, 338, 347
NspI	RCATGY	2 cut(s)	57, 142
PaeI	GCATGC	2 cut(s)	57, 142
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	2 cut(s)	347, 550
PfeI	GAWTC	2 cut(s)	95, 658
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	243, 520
PleI	GAGTC	2 cut(s)	157, 184
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	157, 184
PpuMI	RGGWCCY	1 cut(s)	224
PshBI	ATTAAT	1 cut(s)	650
PsiI	TTATAA	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	33, 91, 200, 226
PspPI	GGNCC	3 cut(s)	199, 224, 233
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
SaqAI	TTAA	5 cut(s)	402, 423, 581, 597, 650
SatI	GCNGC	2 cut(s)	242, 519
Sau3AI	GATC	2 cut(s)	31, 283
Sau96I	GGNCC	3 cut(s)	199, 224, 233
SchI	GAGTC	2 cut(s)	158, 185
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	6 cut(s)	23, 30, 42, 217, 331, 381
SfaNI	GCATC	2 cut(s)	208, 664
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	3 cut(s)	199, 224, 233
SmlI	CTYRAG	3 cut(s)	473, 566, 575
SmoI	CTYRAG	3 cut(s)	473, 566, 575
SphI	GCATGC	2 cut(s)	57, 142
Sse9I	AATT	7 cut(s)	110, 250, 297, 522, 647, 651, 678
SsiI	CCGC	2 cut(s)	185, 613
SspDI	GGCGCC	1 cut(s)	89
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	42
TasI	AATT	7 cut(s)	110, 250, 297, 522, 647, 651, 678
TfiI	GAWTC	2 cut(s)	95, 658
Tru1I	TTAA	5 cut(s)	402, 423, 581, 597, 650
Tru9I	TTAA	5 cut(s)	402, 423, 581, 597, 650
TscAI	CASTG	1 cut(s)	321
TseI	GCWGC	2 cut(s)	241, 518
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	3 cut(s)	199, 224, 233
VspI	ATTAAT	1 cut(s)	650
XagI	CCTNNNNNAGG	1 cut(s)	219
XceI	RCATGY	2 cut(s)	57, 142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	1 cut(s)	588
Zsp2I	ATGCAT	3 cut(s)	55, 338, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.