AT3G61870

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011218
Physical Location & Seq
Forward (+)
22902491 .. 22904137
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61870.2

Sequence Viewer

Length: 819 bp
ATGGCGACCACACTTCATTGTCTCTCCACACTCCATCTTCTTCCTCGCACTCATCACCCTAAAACCCTAAACTCTCTCAAACCAATCACCACCAAATCACAACCATGTAAAACCCCAGAAATACCCTCCACTCCCAACGCTCTTCAGCTCCTTAAATCATCCTCTCTCCCTCTCGCAGTCATCGCATTGCCTTTCTTCCTCGACCCACAGGATGCAGCAGCAGCTGGAGGAGAATTCGGAATATTAGAAGGGAGATCATTTGCGTTGATACACCCAATTGTGATGGGAGGTTTATTTGCATACACTCTTTGGACTGGTTACTTAGGTTGGCAATGGAGACGTGTCCGTACGATACAGAGTGAGATTAGTGATCTCAAGAAACAGCTTAAACCAACTCCTGTTTCCCCTGATGGTTCCACAGCCGTTGATTCTTCGTCGCCTCCTTCTACGACTGAGCTTCAGATCCAACGGCTAACTGAAGAGAGGAAAGAGTTGGTCAAAGGGTCTTACAGAGACAAACACTTTGACGCTGGCTCTGTTTTGTTAGGTTTCGGTGTTTTGGAAGCTGTCTTTGGTGGTGTTAACACTTATCTTCGTACTGGTAAACTCTTCCCCGGTCCTCATCTTTACGCCGGTGCAGGAATAACGGTGTTGTGGGCGGCGGCGGCAGCATTGGTGCCGGCAATGCAGAAAGGGAACGATACGGCGAGGAGTCTACATATAGCGTTGAATGCAGTAAATGTTCTTCTTTTCATTTGGCAAATCCCAACAGGTCTTGATATCGTTCTTAAGGTCTTTGAGTTCACTAAATGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

272

Amino Acids

29.59

Weight (kDa)

9.34

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 88 - 223 9.6e-24 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 715
AciI CCGC 3 cut(s) 659, 662, 665
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 3 cut(s) 128, 443, 498
AfaI GTAC 2 cut(s) 349, 598
AflII CTTAAG 1 cut(s) 788
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 730
AjiI CACGTC 1 cut(s) 341
AjuI GAANNNNNNNTTGG 4 cut(s) 385, 417, 555, 587
AluBI AGCT 5 cut(s) 148, 224, 385, 457, 566
AluI AGCT 5 cut(s) 148, 224, 385, 457, 566
Alw26I GTCTC 3 cut(s) 26, 331, 507
AlwI GGATC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 1 cut(s) 812
ApeKI GCWGC 4 cut(s) 215, 218, 221, 668
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 47, 79
AvaII GGWCC 1 cut(s) 617
BalI TGGCCA 1 cut(s) 814
BanI GGYRCC 1 cut(s) 676
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BbvI GCAGC 4 cut(s) 227, 230, 233, 680
BccI CCATC 3 cut(s) 42, 277, 404
BceAI ACGGC 3 cut(s) 407, 485, 720
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 26, 331, 507
BfrI CTTAAG 1 cut(s) 788
BisI GCNGC 7 cut(s) 216, 219, 222, 660, 663, 666, 669
BlsI GCNGC 7 cut(s) 217, 220, 223, 661, 664, 667, 670
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 617
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 415, 678
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 613
Bse118I RCCGGY 2 cut(s) 632, 679
Bse1I ACTGG 2 cut(s) 319, 604
Bse3DI GCAATG 3 cut(s) 185, 338, 690
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 158, 217
BseMI GCAATG 3 cut(s) 185, 338, 690
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 319, 604
BseRI GAGGAG 2 cut(s) 243, 724
BseXI GCAGC 4 cut(s) 227, 230, 233, 680
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 1 cut(s) 814
BshNI GGYRCC 1 cut(s) 676
BsiSI CCGG 3 cut(s) 615, 633, 680
BsiWI CGTACG 1 cut(s) 347
BsmAI GTCTC 3 cut(s) 26, 331, 507
BsmBI CGTCTC 1 cut(s) 331
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 1 cut(s) 814
Bsp143I GATC 3 cut(s) 254, 370, 462
BspACI CCGC 3 cut(s) 659, 662, 665
BspANI GGCC 1 cut(s) 814
BspCNI CTCAG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 415, 678
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 676
BspTI CTTAAG 1 cut(s) 788
BsrDI GCAATG 3 cut(s) 185, 338, 690
BsrFI RCCGGY 2 cut(s) 632, 679
BsrI ACTGG 2 cut(s) 319, 604
BssAI RCCGGY 2 cut(s) 632, 679
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 3 cut(s) 254, 370, 462
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 3 cut(s) 147, 474, 614
BstAFI CTTAAG 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 532, 681
BstDEI CTNAG 2 cut(s) 322, 453
BstF5I GGATG 2 cut(s) 158, 217
BstKTI GATC 3 cut(s) 257, 373, 465
BstMAI GTCTC 3 cut(s) 26, 331, 507
BstMBI GATC 3 cut(s) 254, 370, 462
BstMWI GCNNNNNNNGC 6 cut(s) 182, 221, 665, 668, 685, 731
BstSCI CCNGG 1 cut(s) 613
BstV1I GCAGC 4 cut(s) 227, 230, 233, 680
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 1 cut(s) 814
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 2 cut(s) 158, 217
Cac8I GCNNGC 2 cut(s) 532, 681
CaiI CAGNNNCTG 1 cut(s) 224
Cfr10I RCCGGY 2 cut(s) 632, 679
Cfr13I GGNCC 1 cut(s) 617
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 348, 597
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 1 cut(s) 105
CviJI RGCY 9 cut(s) 148, 224, 385, 422, 457, 472, 534, 566, 814
CviKI_1 RGCY 9 cut(s) 148, 224, 385, 422, 457, 472, 534, 566, 814
CviQI GTAC 2 cut(s) 348, 597
DdeI CTNAG 2 cut(s) 322, 453
DpnI GATC 3 cut(s) 256, 372, 464
DpnII GATC 3 cut(s) 254, 370, 462
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 3 cut(s) 147, 474, 614
EarI CTCTTC 3 cut(s) 147, 474, 614
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 3 cut(s) 128, 443, 498
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 781
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 1 cut(s) 108
FaiI YATR 5 cut(s) 106, 301, 720, 722, 817
FatI CATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 7 cut(s) 216, 219, 222, 660, 663, 666, 669
FokI GGATG 2 cut(s) 145, 224
Fsp4HI GCNGC 7 cut(s) 216, 219, 222, 660, 663, 666, 669
GluI GCNGC 7 cut(s) 216, 219, 222, 660, 663, 666, 669
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 814
HapII CCGG 3 cut(s) 615, 633, 680
HgaI GACGC 1 cut(s) 536
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 2 cut(s) 428, 712
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 3 cut(s) 615, 633, 680
HphI GGTGA 2 cut(s) 47, 79
Hpy166II GTNNAC 4 cut(s) 583, 605, 716, 804
Hpy188I TCNGA 2 cut(s) 239, 462
Hpy188III TCNNGA 2 cut(s) 376, 776
Hpy8I GTNNAC 4 cut(s) 583, 605, 716, 804
Hpy99I CGWCG 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 242, 453
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 215, 299, 638, 688, 734
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 221, 665, 668, 685, 731
HpyF3I CTNAG 2 cut(s) 322, 453
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 108
KroI GCCGGC 1 cut(s) 679
KroNI GCCGGC 1 cut(s) 681
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 3 cut(s) 254, 370, 462
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 4 cut(s) 227, 230, 233, 680
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 256, 372, 464
MboI GATC 3 cut(s) 254, 370, 462
MboII GAAGA 9 cut(s) 29, 32, 134, 187, 423, 491, 584, 601, 737
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 462
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 2 cut(s) 233, 276
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 1 cut(s) 721
MmeI TCCRAC 1 cut(s) 490
Mox20I TGGCCA 1 cut(s) 814
MroNI GCCGGC 1 cut(s) 679
MscI TGGCCA 1 cut(s) 814
MseI TTAA 4 cut(s) 153, 387, 582, 789
MslI CAYNNNNRTG 1 cut(s) 103
Msp20I TGGCCA 1 cut(s) 814
MspA1I CMGCKG 1 cut(s) 224
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 3 cut(s) 615, 633, 680
MspR9I CCNGG 1 cut(s) 615
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 736
MwoI GCNNNNNNNGC 6 cut(s) 182, 221, 665, 668, 685, 731
NaeI GCCGGC 1 cut(s) 681
NciI CCSGG 1 cut(s) 615
NdeII GATC 3 cut(s) 254, 370, 462
NgoMIV GCCGGC 1 cut(s) 679
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 415, 678
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 1 cut(s) 736
PdiI GCCGGC 1 cut(s) 681
PfeI GAWTC 1 cut(s) 428
Pfl23II CGTACG 1 cut(s) 347
PkrI GCNGC 7 cut(s) 217, 220, 223, 661, 664, 667, 670
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PspLI CGTACG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 415, 678
PspPI GGNCC 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 349, 598
RsaNI GTAC 2 cut(s) 348, 597
RseI CAYNNNNRTG 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 4 cut(s) 153, 387, 582, 789
SatI GCNGC 7 cut(s) 216, 219, 222, 660, 663, 666, 669
Sau3AI GATC 3 cut(s) 254, 370, 462
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 1 cut(s) 721
ScrFI CCNGG 1 cut(s) 615
SfaNI GCATC 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 632
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 2 cut(s) 374, 788
SmoI CTYRAG 2 cut(s) 374, 788
Sse9I AATT 2 cut(s) 233, 276
SsiI CCGC 3 cut(s) 659, 662, 665
SspI AATATT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 233, 276
TauI GCSGC 3 cut(s) 662, 665, 668
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 4 cut(s) 153, 387, 582, 789
Tru9I TTAA 4 cut(s) 153, 387, 582, 789
TseI GCWGC 4 cut(s) 215, 218, 221, 668
TspDTI ATGAA 2 cut(s) 5, 742
TspGWI ACGGA 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.