FvH4_7g17240

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011218
Physical Location & Seq
Forward (+)
14683456 .. 14685451
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17240.t1

Sequence Viewer

Length: 963 bp
ATGAAGATCAAAGCAAAGCGAGCCAAATGGACACAATCCCATCTCCTAATCTTTACCTCTTATCTTCTCCACAACTTCTCAAACCCTCTGAACCTCTCTCTCTCTGCCCAAACACAAGCTTTGAAGCAGACAAAGAGCATGGCAGCCACGCTCAGCTTCCTCAAGCTCCCTGTTCTCCTTCCCCACAAACCCAATTATTGCATCTCAAAGTTGCAAGTACATCCCTCCTCATCGAGACCCAATATTCCAAAGCAGGACCCAATTCCTCCCCCACAGAAACTAATCACCACCACCTTCCACAGTCTCAAGTCAGCGTCTCTTCCCCTCACTGCTCTCACATTGCCATTTTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAGTTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTACTTGGGTTGGCAATGGAGGCGGGTCAGGACAATCCAGGATGAGATTAATGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACTCCAGTTGAAGCACCACCGTCTCCTGTTTCCCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGGGTTACCGGGATAGACACTTCAATGCTGGTTCATTACTGCTCGCTTTCGGAGTTTTTGAGGCAATTGGTGGAGGAGTTAACACATGGTTAAGGACCGGAAAGCTATTTCCAGGTCCCCATTTGTTTGCAGGAGCAGGTATCACGGTGCTATGGGCAGCAGCAGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACAGCTAGAAGCCTTCACATTGCACTCAACGCGATAAACCTTCTGCTTTTTATATGGCAGATACCTACAGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

321

Amino Acids

35.47

Weight (kDa)

9.94

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 139 - 312 2.5e-45 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 773, 832
AccII CGCG 1 cut(s) 878
AciI CCGC 2 cut(s) 441, 493
AcsI RAATTY 1 cut(s) 944
AdeI CACNNNGTG 1 cut(s) 462
AfaI GTAC 3 cut(s) 219, 473, 822
AgsI TTSAA 5 cut(s) 124, 578, 605, 670, 944
AjnI CCWGG 2 cut(s) 507, 757
AluBI AGCT 7 cut(s) 119, 156, 166, 526, 751, 812, 851
AluI AGCT 7 cut(s) 119, 156, 166, 526, 751, 812, 851
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 5 cut(s) 229, 308, 321, 594, 839
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 2 cut(s) 465, 956
ApeKI GCWGC 5 cut(s) 143, 803, 806, 809, 812
ApoI RAATTY 1 cut(s) 944
AseI ATTAAT 1 cut(s) 519
AspS9I GGNCC 5 cut(s) 256, 355, 465, 741, 761
AsuC2I CCSGG 2 cut(s) 469, 656
AsuHPI GGTGA 2 cut(s) 277, 652
AvaII GGWCC 4 cut(s) 256, 355, 741, 761
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 5 cut(s) 155, 799, 815, 818, 821
BccI CCATC 3 cut(s) 48, 430, 557
BciT130I CCWGG 2 cut(s) 509, 759
BcnI CCSGG 2 cut(s) 469, 656
BcoDI GTCTC 5 cut(s) 229, 308, 321, 594, 839
BfaI CTAG 1 cut(s) 852
BfmI CTRYAG 1 cut(s) 912
BfuAI ACCTGC 2 cut(s) 773, 832
BisI GCNGC 5 cut(s) 144, 804, 807, 810, 813
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 5 cut(s) 145, 805, 808, 811, 814
Bme1390I CCNGG 4 cut(s) 469, 509, 656, 759
Bme18I GGWCC 4 cut(s) 256, 355, 741, 761
BmgT120I GGNCC 5 cut(s) 256, 355, 465, 741, 761
BmiI GGNNCC 3 cut(s) 258, 357, 763
BmrFI CCNGG 4 cut(s) 469, 509, 656, 759
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 2 cut(s) 210, 355
BmuI ACTGGG 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 152
BpuEI CTTGAG 3 cut(s) 146, 290, 512
BpuMI CCSGG 2 cut(s) 469, 656
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 743
Bse1I ACTGG 2 cut(s) 428, 572
Bse3DI GCAATG 4 cut(s) 338, 491, 834, 864
BseBI CCWGG 2 cut(s) 509, 759
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 220, 370, 517
BseMI GCAATG 4 cut(s) 338, 491, 834, 864
BseMII CTCAG 2 cut(s) 166, 631
BseNI ACTGG 2 cut(s) 428, 572
BseRI GAGGAG 2 cut(s) 217, 735
BseXI GCAGC 5 cut(s) 155, 799, 815, 818, 821
BsgI GTGCAG 1 cut(s) 798
Bsh1236I CGCG 1 cut(s) 878
BshFI GGCC 2 cut(s) 467, 958
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 3 cut(s) 468, 655, 744
BslFI GGGAC 2 cut(s) 580, 747
BsmAI GTCTC 5 cut(s) 229, 308, 321, 594, 839
BsmBI CGTCTC 2 cut(s) 321, 594
BsmFI GGGAC 2 cut(s) 580, 747
BsnI GGCC 2 cut(s) 467, 958
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 2 cut(s) 441, 493
BspANI GGCC 2 cut(s) 467, 958
BspCNI CTCAG 2 cut(s) 165, 630
BspFNI CGCG 1 cut(s) 878
BspLI GGNNCC 3 cut(s) 258, 357, 763
BspMI ACCTGC 2 cut(s) 773, 832
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 4 cut(s) 338, 491, 834, 864
BsrI ACTGG 2 cut(s) 428, 572
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 509, 759
Bst4CI ACNGT 3 cut(s) 302, 588, 793
Bst6I CTCTTC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 21, 690
BstDEI CTNAG 2 cut(s) 152, 617
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 3 cut(s) 220, 370, 517
BstFNI CGCG 1 cut(s) 878
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 5 cut(s) 229, 308, 321, 594, 839
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 7 cut(s) 20, 490, 532, 541, 809, 812, 875
BstNI CCWGG 2 cut(s) 509, 759
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 4 cut(s) 467, 507, 654, 757
BstSFI CTRYAG 1 cut(s) 912
BstUI CGCG 1 cut(s) 878
BstV1I GCAGC 5 cut(s) 155, 799, 815, 818, 821
BsuRI GGCC 2 cut(s) 467, 958
BtsCI GGATG 3 cut(s) 220, 370, 517
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 327, 625
BveI ACCTGC 2 cut(s) 773, 832
Cac8I GCNNGC 2 cut(s) 21, 690
CaiI CAGNNNCTG 1 cut(s) 812
Cfr13I GGNCC 5 cut(s) 256, 355, 465, 741, 761
CseI GACGC 1 cut(s) 303
Csp6I GTAC 3 cut(s) 218, 472, 821
CviAII CATG 2 cut(s) 139, 732
CviQI GTAC 3 cut(s) 218, 472, 821
DdeI CTNAG 2 cut(s) 152, 617
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 4 cut(s) 256, 355, 741, 761
Eco53kI GAGCTC 1 cut(s) 526
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 526
EcoO109I RGGNCCY 2 cut(s) 256, 761
EcoO65I GGTNACC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 2 cut(s) 507, 757
EcoT14I CCWWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 360
Esp3I CGTCTC 2 cut(s) 321, 594
FaeI CATG 2 cut(s) 142, 735
FaiI YATR 6 cut(s) 140, 733, 799, 899, 901, 926
FaqI GGGAC 2 cut(s) 580, 747
FatI CATG 2 cut(s) 138, 731
FauI CCCGC 2 cut(s) 434, 486
Fnu4HI GCNGC 5 cut(s) 144, 804, 807, 810, 813
FokI GGATG 3 cut(s) 207, 377, 524
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 5 cut(s) 144, 804, 807, 810, 813
FspBI CTAG 1 cut(s) 852
GluI GCNGC 5 cut(s) 144, 804, 807, 810, 813
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 467, 958
HapII CCGG 3 cut(s) 468, 655, 744
HgaI GACGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 142, 735
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 568
HpaI GTTAAC 1 cut(s) 727
HpaII CCGG 3 cut(s) 468, 655, 744
HphI GGTGA 2 cut(s) 277, 652
Hpy166II GTNNAC 2 cut(s) 454, 727
Hpy188I TCNGA 3 cut(s) 90, 420, 698
Hpy188III TCNNGA 3 cut(s) 234, 499, 529
Hpy8I GTNNAC 2 cut(s) 454, 727
HpyAV CCTTC 7 cut(s) 188, 304, 399, 611, 625, 869, 896
HpyCH4III ACNGT 3 cut(s) 302, 588, 793
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 8 cut(s) 201, 214, 368, 776, 815, 827, 832, 869
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 490, 532, 541, 809, 812, 875
HpyF3I CTNAG 2 cut(s) 152, 617
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 2 cut(s) 142, 735
KspAI GTTAAC 1 cut(s) 727
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 171, 779
Lsp1109I GCAGC 5 cut(s) 155, 799, 815, 818, 821
LweI GCATC 2 cut(s) 210, 355
MaeI CTAG 1 cut(s) 852
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 553, 650
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 16, 56, 311
MfeI CAATTG 1 cut(s) 711
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 5 cut(s) 193, 261, 606, 711, 944
MlyI GAGTC 1 cut(s) 562
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 4 cut(s) 519, 609, 726, 737
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 812
MspI CCGG 3 cut(s) 468, 655, 744
MspR9I CCNGG 4 cut(s) 469, 509, 656, 759
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 2 cut(s) 509, 759
MvnI CGCG 1 cut(s) 878
MwoI GCNNNNNNNGC 7 cut(s) 20, 490, 532, 541, 809, 812, 875
NciI CCSGG 2 cut(s) 469, 656
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 142, 735
NlaIV GGNNCC 3 cut(s) 258, 357, 763
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 5 cut(s) 145, 805, 808, 811, 814
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 2 cut(s) 256, 761
PshBI ATTAAT 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 528
Psp5II RGGWCCY 2 cut(s) 256, 761
Psp6I CCWGG 2 cut(s) 507, 757
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 2 cut(s) 507, 757
PspN4I GGNNCC 3 cut(s) 258, 357, 763
PspPI GGNCC 5 cut(s) 256, 355, 465, 741, 761
PspPPI RGGWCCY 2 cut(s) 256, 761
PstNI CAGNNNCTG 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 3 cut(s) 219, 473, 822
RsaNI GTAC 3 cut(s) 218, 472, 821
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 4 cut(s) 519, 609, 726, 737
SatI GCNGC 5 cut(s) 144, 804, 807, 810, 813
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 5 cut(s) 256, 355, 465, 741, 761
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 4 cut(s) 469, 509, 656, 759
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 2 cut(s) 210, 355
SfcI CTRYAG 1 cut(s) 912
SinI GGWCC 4 cut(s) 256, 355, 741, 761
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 3 cut(s) 161, 305, 527
SmoI CTYRAG 3 cut(s) 161, 305, 527
Sse9I AATT 5 cut(s) 193, 261, 606, 711, 944
SsiI CCGC 2 cut(s) 441, 493
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 852
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 4 cut(s) 467, 507, 654, 757
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 302, 588, 793
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 233
TasI AATT 5 cut(s) 193, 261, 606, 711, 944
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 4 cut(s) 519, 609, 726, 737
Tru9I TTAA 4 cut(s) 519, 609, 726, 737
TscAI CASTG 2 cut(s) 334, 625
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 5 cut(s) 143, 803, 806, 809, 812
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 2 cut(s) 17, 669
TspRI CASTG 2 cut(s) 334, 625
VpaK11BI GGWCC 4 cut(s) 256, 355, 741, 761
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 1 cut(s) 944
XspI CTAG 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.