pycom07g15230

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011218
Physical Location & Seq
Forward (+)
17399683 .. 17400874
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15230.1

Sequence Viewer

Length: 567 bp
ATGTCATTTTCGACATTTGCGCTGATTCACCCAATTATGATGGGAGGACTGTTTGTGTACACATTATGGGCAGGCTACTTGGGTTGGCAATGGAGGAGAGTGAGGACAATCCAGGAAGAAATTAATGAGCTCAAGAAGCAGGTGAAGGCTACCCCTGTCACACCTGAGGGGACTCCAGCGGAAGCTCCCCCATCTCATTTGGCACTCAAAATTCAGCAGCTCACTGAGGAAAGGAAGGAGTTGGTGAAAGGGTCTTACCGGGATAAACACTTCAATGCAGGATCGATATTGTTAGCTTTCGGAGTTTTTGAGTCGGTTGGTGGAGGACTCAACACTTGGTTTAGGACAGGAAAGCTATTTCCAGGTCCCCATTTGTTTGCTGGAGCAGCTATCACGGTGCTATGGGCAGCGGCGGCAGCTCTTACGCCTGCAATGCAAAAGGGAAGTGAGACAGCCAGAAGCCTTCACATTACATTGAATACGATAAACGTTCTGCTTTTCGTATGGCAAATACCTACTGGATGGGAGATACTTCTGAGAGTGTTCGAGTTCACTACATGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

189

Amino Acids

21.01

Weight (kDa)

9.52

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 7 - 180 1.5e-46 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AciI CCGC 3 cut(s) 179, 410, 413
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 2 cut(s) 274, 478
AjnI CCWGG 2 cut(s) 111, 361
AluBI AGCT 7 cut(s) 130, 185, 220, 296, 355, 389, 419
AluI AGCT 7 cut(s) 130, 185, 220, 296, 355, 389, 419
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 1 cut(s) 289
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 4 cut(s) 217, 386, 407, 416
ApoI RAATTY 1 cut(s) 210
AseI ATTAAT 1 cut(s) 123
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 3 cut(s) 20, 154, 256
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 165
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 229, 398, 419, 428
BccI CCATC 3 cut(s) 34, 199, 516
BciT130I CCWGG 2 cut(s) 113, 363
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 6 cut(s) 218, 387, 408, 411, 414, 417
BlsI GCNGC 6 cut(s) 219, 388, 409, 412, 415, 418
Bme1390I CCNGG 3 cut(s) 113, 260, 363
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 113, 260, 363
BpmI CTGGAG 2 cut(s) 159, 402
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 523
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 95, 438
BseBI CCWGG 2 cut(s) 113, 363
BseCI ATCGAT 1 cut(s) 284
BseGI GGATG 1 cut(s) 527
BseMI GCAATG 2 cut(s) 95, 438
BseMII CTCAG 3 cut(s) 156, 216, 527
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 229, 398, 419, 428
BshFI GGCC 1 cut(s) 562
BshVI ATCGAT 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 184, 351
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 184, 351
BsnI GGCC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 3 cut(s) 179, 410, 413
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 3 cut(s) 157, 217, 528
BspDI ATCGAT 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 289
BsrDI GCAATG 2 cut(s) 95, 438
BsrGI TGTACA 1 cut(s) 57
BsrI ACTGG 1 cut(s) 523
BssMI GATC 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 113, 363
Bst4CI ACNGT 2 cut(s) 51, 397
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 73, 429
BstDEI CTNAG 3 cut(s) 165, 225, 536
BstF5I GGATG 1 cut(s) 527
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 136, 386, 413, 416, 433
BstNI CCWGG 2 cut(s) 113, 363
BstSCI CCNGG 3 cut(s) 111, 258, 361
BstV1I GCAGC 4 cut(s) 229, 398, 419, 428
Bsu15I ATCGAT 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 562
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 1 cut(s) 527
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 73, 429
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 284
Csp6I GTAC 1 cut(s) 58
CviAII CATG 1 cut(s) 558
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 3 cut(s) 165, 225, 536
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 111, 361
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 561
FaiI YATR 5 cut(s) 38, 67, 403, 505, 559
FaqI GGGAC 2 cut(s) 184, 351
FatI CATG 1 cut(s) 557
Fnu4HI GCNGC 6 cut(s) 218, 387, 408, 411, 414, 417
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 6 cut(s) 218, 387, 408, 411, 414, 417
GlaI GCGC 1 cut(s) 21
GluI GCNGC 6 cut(s) 218, 387, 408, 411, 414, 417
GsuI CTGGAG 2 cut(s) 159, 402
HaeIII GGCC 1 cut(s) 562
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 22
Hin1II CATG 1 cut(s) 561
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 25, 172, 311, 327
HpaII CCGG 1 cut(s) 259
HphI GGTGA 3 cut(s) 20, 154, 256
Hpy166II GTNNAC 3 cut(s) 58, 60, 552
Hpy188I TCNGA 2 cut(s) 302, 537
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 3 cut(s) 58, 60, 552
HpyAV CCTTC 3 cut(s) 139, 229, 473
HpyCH4III ACNGT 2 cut(s) 51, 397
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 278, 431, 436
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 386, 413, 416, 433
HpyF3I CTNAG 3 cut(s) 165, 225, 536
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 1 cut(s) 561
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 190, 383
Lsp1109I GCAGC 4 cut(s) 229, 398, 419, 428
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 33, 120, 210
MlyI GAGTC 3 cut(s) 166, 320, 321
MnlI CCTC 6 cut(s) 38, 87, 96, 160, 220, 317
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 2 cut(s) 179, 410
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 3 cut(s) 113, 260, 363
MvaI CCWGG 2 cut(s) 113, 363
MwoI GCNNNNNNNGC 5 cut(s) 136, 386, 413, 416, 433
NciI CCSGG 1 cut(s) 260
NdeII GATC 1 cut(s) 281
NlaIII CATG 1 cut(s) 561
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 6 cut(s) 219, 388, 409, 412, 415, 418
PleI GAGTC 3 cut(s) 166, 319, 321
PpsI GAGTC 3 cut(s) 166, 319, 321
PpuMI RGGWCCY 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 111, 361
PspGI CCWGG 2 cut(s) 111, 361
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 6 cut(s) 218, 387, 408, 411, 414, 417
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 3 cut(s) 166, 320, 321
ScrFI CCNGG 3 cut(s) 113, 260, 363
SduI GDGCHC 1 cut(s) 132
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 33, 120, 210
SsiI CCGC 3 cut(s) 179, 410, 413
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 111, 258, 361
TaaI ACNGT 2 cut(s) 51, 397
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 11, 284, 546
TasI AATT 3 cut(s) 33, 120, 210
TatI WGTACW 1 cut(s) 57
TauI GCSGC 2 cut(s) 413, 416
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 217, 386, 407, 416
Tsp45I GTSAC 1 cut(s) 157
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 365
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.