Rh1AG292300

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011218
Physical Location & Seq
Forward (+)
52230887 .. 52233535
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG292300.1

Sequence Viewer

Length: 717 bp
ATGAGCATGGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGAACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCCTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCACATTGCCATTTTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTTAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCAATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGTAAAACATGGGTTTTGTGTATGCAAAAACTAGAGCAAAATAACATACCAAGAAACTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

238

Amino Acids

26.4

Weight (kDa)

9.52

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 95 - 227 9.6e-25 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 641
AciI CCGC 3 cut(s) 11, 309, 361
AclWI GGATC 1 cut(s) 553
AcoI YGGCCR 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 330
AgsI TTSAA 3 cut(s) 446, 473, 538
AhlI ACTAGT 1 cut(s) 148
AluBI AGCT 6 cut(s) 24, 34, 182, 200, 394, 619
AluI AGCT 6 cut(s) 24, 34, 182, 200, 394, 619
Alw21I GWGCWC 1 cut(s) 396
AlwI GGATC 1 cut(s) 553
AoxI GGCC 2 cut(s) 12, 333
AspS9I GGNCC 3 cut(s) 223, 333, 629
AsuC2I CCSGG 3 cut(s) 337, 524, 627
AvaII GGWCC 2 cut(s) 223, 629
BanII GRGCYC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 396
BccI CCATC 3 cut(s) 298, 425, 463
BcnI CCSGG 3 cut(s) 337, 524, 627
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 2 cut(s) 149, 683
BfuAI ACCTGC 1 cut(s) 641
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 337, 524, 627
Bme18I GGWCC 2 cut(s) 223, 629
BmgT120I GGNCC 3 cut(s) 223, 333, 629
BmiI GGNNCC 3 cut(s) 225, 630, 631
BmrFI CCNGG 3 cut(s) 337, 524, 627
BmsI GCATC 2 cut(s) 78, 223
Bpu1102I GCTNAGC 1 cut(s) 20
BpuEI CTTGAG 3 cut(s) 14, 158, 380
BpuMI CCSGG 3 cut(s) 337, 524, 627
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 440, 616
Bse3DI GCAATG 2 cut(s) 206, 359
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 238
BseMI GCAATG 2 cut(s) 206, 359
BseMII CTCAG 2 cut(s) 34, 499
BseNI ACTGG 2 cut(s) 440, 616
BseRI GAGGAG 1 cut(s) 603
BshFI GGCC 2 cut(s) 14, 335
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 3 cut(s) 336, 523, 626
BslFI GGGAC 2 cut(s) 448, 615
BsmFI GGGAC 2 cut(s) 448, 615
BsnI GGCC 2 cut(s) 14, 335
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 545
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 3 cut(s) 11, 309, 361
BspANI GGCC 2 cut(s) 14, 335
BspCNI CTCAG 2 cut(s) 33, 498
BspLI GGNNCC 3 cut(s) 225, 630, 631
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 1 cut(s) 553
BspQI GCTCTTC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 206, 359
BsrI ACTGG 2 cut(s) 440, 616
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 192, 474
BstC8I GCNNGC 2 cut(s) 350, 558
BstDEI CTNAG 2 cut(s) 20, 485
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 548
BstMBI GATC 1 cut(s) 545
BstMWI GCNNNNNNNGC 3 cut(s) 358, 400, 409
BstSCI CCNGG 3 cut(s) 335, 522, 625
BsuRI GGCC 2 cut(s) 14, 335
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 493
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 2 cut(s) 350, 558
Cfr13I GGNCC 3 cut(s) 223, 333, 629
CviAII CATG 3 cut(s) 7, 600, 660
DdeI CTNAG 2 cut(s) 20, 485
DpnI GATC 1 cut(s) 547
DpnII GATC 1 cut(s) 545
DraIII CACNNNGTG 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 192, 474
EarI CTCTTC 2 cut(s) 192, 474
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 223, 629
Eco53kI GAGCTC 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 10, 603, 663
FaiI YATR 6 cut(s) 8, 601, 661, 674, 698, 711
FaqI GGGAC 2 cut(s) 448, 615
FatI CATG 3 cut(s) 6, 599, 659
FauI CCCGC 2 cut(s) 302, 354
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 149, 683
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 14, 335
HapII CCGG 3 cut(s) 336, 523, 626
Hin1II CATG 3 cut(s) 10, 603, 663
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 125
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 3 cut(s) 336, 523, 626
Hpy166II GTNNAC 2 cut(s) 322, 595
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 367, 376, 397
Hpy8I GTNNAC 2 cut(s) 322, 595
HpyAV CCTTC 4 cut(s) 56, 144, 267, 493
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 69, 236, 542, 644, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 400, 409
HpyF3I CTNAG 2 cut(s) 20, 485
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 3 cut(s) 10, 603, 663
KflI GGGWCCC 1 cut(s) 629
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 1 cut(s) 545
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 1 cut(s) 647
LweI GCATC 2 cut(s) 78, 223
MaeI CTAG 2 cut(s) 149, 683
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 151, 421
MalI GATC 1 cut(s) 547
MboI GATC 1 cut(s) 545
MboII GAAGA 2 cut(s) 179, 461
MfeI CAATTG 2 cut(s) 297, 579
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 5 cut(s) 77, 297, 474, 517, 579
MlyI GAGTC 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 3 cut(s) 477, 510, 594
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 3 cut(s) 336, 523, 626
MspR9I CCNGG 3 cut(s) 337, 524, 627
MunI CAATTG 2 cut(s) 297, 579
MwoI GCNNNNNNNGC 3 cut(s) 358, 400, 409
NciI CCSGG 3 cut(s) 337, 524, 627
NdeII GATC 1 cut(s) 545
NlaIII CATG 3 cut(s) 10, 603, 663
NlaIV GGNNCC 3 cut(s) 225, 630, 631
NmuCI GTSAC 2 cut(s) 151, 421
NsiI ATGCAT 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 474
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 629
PspN4I GGNNCC 3 cut(s) 225, 630, 631
PspPI GGNCC 3 cut(s) 223, 333, 629
PspPPI RGGWCCY 1 cut(s) 629
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 3 cut(s) 477, 510, 594
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 545
Sau96I GGNCC 3 cut(s) 223, 333, 629
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 337, 524, 627
SduI GDGCHC 1 cut(s) 396
SetI ASST 8 cut(s) 26, 36, 184, 202, 281, 396, 621, 655
SfaNI GCATC 2 cut(s) 78, 223
SinI GGWCC 2 cut(s) 223, 629
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 3 cut(s) 29, 173, 395
SmoI CTYRAG 3 cut(s) 29, 173, 395
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 5 cut(s) 77, 297, 474, 517, 579
SsiI CCGC 3 cut(s) 11, 309, 361
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 149, 683
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 335, 522, 625
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 281
TasI AATT 5 cut(s) 77, 297, 474, 517, 579
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 477, 510, 594
Tru9I TTAA 3 cut(s) 477, 510, 594
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 2 cut(s) 151, 421
Tsp45I GTSAC 2 cut(s) 151, 421
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 223, 629
XspI CTAG 2 cut(s) 149, 683
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.