RLG00000027794

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011218
Physical Location & Seq
Reverse (-)
15308962 .. 15310754
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027794

Sequence Viewer

Length: 885 bp
ATGGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCTTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCACATTGCCATTTTTCTTCGACCGCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTTCACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACGCCGGACGGGACACCGGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCTATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCAGGTCCCCATTTGTTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAATGCGATAAACACTATTGAAGGTGTGAAGAGTTTCTTTGAAGCATTGGATGTTGTATCTGCTCCAGTTAACGTTTTTTGTACATGTAAAAACGGCATTTCACTGTATGCTGTACGGTACCATGAAATACATACTAATCTTTTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

295

Amino Acids

32.2

Weight (kDa)

9.51

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 93 - 249 7.1e-38 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 694
Acc65I GGTACC 1 cut(s) 852
AccB1I GGYRCC 1 cut(s) 852
AciI CCGC 4 cut(s) 5, 220, 303, 355
AclI AACGTT 1 cut(s) 807
AclWI GGATC 1 cut(s) 547
AcoI YGGCCR 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 5 cut(s) 81, 684, 817, 849, 854
AflIII ACRYGT 1 cut(s) 818
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 5 cut(s) 440, 467, 532, 755, 776
AhlI ACTAGT 1 cut(s) 142
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 7 cut(s) 18, 28, 176, 194, 388, 613, 671
AluI AGCT 7 cut(s) 18, 28, 176, 194, 388, 613, 671
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 1 cut(s) 547
AlwNI CAGNNNCTG 2 cut(s) 671, 674
AoxI GGCC 2 cut(s) 6, 327
ApeKI GCWGC 4 cut(s) 665, 668, 671, 674
AsiGI ACCGGT 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 852
AspS9I GGNCC 2 cut(s) 327, 623
AsuC2I CCSGG 2 cut(s) 331, 518
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 852
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 4 cut(s) 658, 661, 677, 680
BccI CCATC 2 cut(s) 292, 457
BceAI ACGGC 2 cut(s) 726, 844
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 2 cut(s) 331, 518
BcoDI GTCTC 1 cut(s) 701
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 2 cut(s) 143, 714
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 5 cut(s) 6, 666, 669, 672, 675
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 5 cut(s) 7, 667, 670, 673, 676
Bme1390I CCNGG 3 cut(s) 331, 518, 621
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 2 cut(s) 327, 623
BmiI GGNNCC 2 cut(s) 625, 854
BmrFI CCNGG 3 cut(s) 331, 518, 621
BmsI GCATC 3 cut(s) 72, 217, 657
BpmI CTGGAG 1 cut(s) 783
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 3 cut(s) 8, 152, 374
BpuMI CCSGG 2 cut(s) 331, 518
BsaWI WCCGGW 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 610, 800
Bse3DI GCAATG 4 cut(s) 200, 353, 696, 726
BseBI CCWGG 1 cut(s) 621
BseGI GGATG 2 cut(s) 232, 790
BseMI GCAATG 4 cut(s) 200, 353, 696, 726
BseMII CTCAG 2 cut(s) 28, 493
BseNI ACTGG 2 cut(s) 610, 800
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 4 cut(s) 658, 661, 677, 680
BsgI GTGCAG 1 cut(s) 660
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 8, 329
BshNI GGYRCC 1 cut(s) 852
BshTI ACCGGT 1 cut(s) 433
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 4 cut(s) 330, 422, 434, 517
BslFI GGGAC 2 cut(s) 442, 609
BsmAI GTCTC 1 cut(s) 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 442, 609
BsnI GGCC 2 cut(s) 8, 329
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 815
Bsp143I GATC 1 cut(s) 539
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 4 cut(s) 5, 220, 303, 355
BspANI GGCC 2 cut(s) 8, 329
BspCNI CTCAG 2 cut(s) 27, 492
BspLI GGNNCC 2 cut(s) 625, 854
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 852
BsrDI GCAATG 4 cut(s) 200, 353, 696, 726
BsrFI RCCGGY 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 815
BsrI ACTGG 2 cut(s) 610, 800
BssAI RCCGGY 1 cut(s) 433
BssMI GATC 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 655, 840, 852
Bst6I CTCTTC 3 cut(s) 186, 468, 758
BstAPI GCANNNNNTGC 3 cut(s) 671, 674, 737
BstAUI TGTACA 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 344, 552, 646
BstDEI CTNAG 2 cut(s) 14, 479
BstF5I GGATG 2 cut(s) 232, 790
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 1 cut(s) 539
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 1 cut(s) 822
BstSCI CCNGG 3 cut(s) 329, 516, 619
BstV1I GCAGC 4 cut(s) 658, 661, 677, 680
BsuRI GGCC 2 cut(s) 8, 329
BtsCI GGATG 2 cut(s) 232, 790
BtsIMutI CAGTG 2 cut(s) 487, 836
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 3 cut(s) 344, 552, 646
CaiI CAGNNNCTG 2 cut(s) 671, 674
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 2 cut(s) 327, 623
Csp6I GTAC 5 cut(s) 80, 683, 816, 848, 853
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 3 cut(s) 594, 819, 857
CviQI GTAC 5 cut(s) 80, 683, 816, 848, 853
DdeI CTNAG 2 cut(s) 14, 479
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
DraIII CACNNNGTG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 186, 468, 758
EarI CTCTTC 3 cut(s) 186, 468, 758
Ecl136II GAGCTC 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 619
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 3 cut(s) 597, 822, 860
FaiI YATR 6 cut(s) 595, 661, 820, 843, 858, 867
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 2 cut(s) 442, 609
FatI CATG 3 cut(s) 593, 818, 856
FauI CCCGC 2 cut(s) 296, 348
Fnu4HI GCNGC 5 cut(s) 6, 666, 669, 672, 675
FokI GGATG 2 cut(s) 239, 797
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 5 cut(s) 6, 666, 669, 672, 675
FspBI CTAG 2 cut(s) 143, 714
GluI GCNGC 5 cut(s) 6, 666, 669, 672, 675
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 2 cut(s) 8, 329
HapII CCGG 4 cut(s) 330, 422, 434, 517
Hin1II CATG 3 cut(s) 597, 822, 860
HincII GTYRAC 2 cut(s) 589, 805
HindII GTYRAC 2 cut(s) 589, 805
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 119
HpaI GTTAAC 2 cut(s) 589, 805
HpaII CCGG 4 cut(s) 330, 422, 434, 517
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 589, 805
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 361, 370, 391
Hpy8I GTNNAC 2 cut(s) 589, 805
HpyAV CCTTC 7 cut(s) 50, 138, 166, 261, 487, 731, 749
HpyCH4III ACNGT 3 cut(s) 655, 840, 852
HpyCH4IV ACGT 2 cut(s) 272, 807
HpyCH4V TGCA 8 cut(s) 63, 230, 536, 638, 677, 689, 694, 731
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
HpyF3I CTNAG 2 cut(s) 14, 479
HpySE526I ACGT 2 cut(s) 272, 807
Hsp92II CATG 3 cut(s) 597, 822, 860
KpnI GGTACC 1 cut(s) 856
KspAI GTTAAC 2 cut(s) 589, 805
Kzo9I GATC 1 cut(s) 539
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 641, 802
Lsp1109I GCAGC 4 cut(s) 658, 661, 677, 680
LweI GCATC 3 cut(s) 72, 217, 657
MaeI CTAG 2 cut(s) 143, 714
MaeII ACGT 2 cut(s) 272, 807
MaeIII GTNAC 2 cut(s) 145, 415
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 4 cut(s) 173, 205, 455, 775
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 4 cut(s) 71, 291, 468, 511
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 9 cut(s) 32, 97, 176, 197, 256, 345, 478, 562, 575
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 4 cut(s) 471, 588, 804, 883
MslI CAYNNNNRTG 2 cut(s) 531, 653
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 4 cut(s) 330, 422, 434, 517
MspR9I CCNGG 3 cut(s) 331, 518, 621
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
NciI CCSGG 2 cut(s) 331, 518
NdeII GATC 1 cut(s) 539
NlaIII CATG 3 cut(s) 597, 822, 860
NlaIV GGNNCC 2 cut(s) 625, 854
NmuCI GTSAC 2 cut(s) 145, 415
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 822
PciI ACATGT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 767
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 5 cut(s) 7, 667, 670, 673, 676
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 625, 854
PspPI GGNCC 2 cut(s) 327, 623
PspPPI RGGWCCY 1 cut(s) 623
PstNI CAGNNNCTG 2 cut(s) 671, 674
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 5 cut(s) 81, 684, 817, 849, 854
RsaNI GTAC 5 cut(s) 80, 683, 816, 848, 853
RseI CAYNNNNRTG 2 cut(s) 531, 653
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 471, 588, 804, 883
SatI GCNGC 5 cut(s) 6, 666, 669, 672, 675
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 2 cut(s) 327, 623
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 331, 518, 621
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 3 cut(s) 72, 217, 657
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 2 cut(s) 531, 653
SmlI CTYRAG 3 cut(s) 23, 167, 389
SmoI CTYRAG 3 cut(s) 23, 167, 389
SpeI ACTAGT 1 cut(s) 142
Sse9I AATT 4 cut(s) 71, 291, 468, 511
SsiI CCGC 4 cut(s) 5, 220, 303, 355
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 143, 714
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 329, 516, 619
TaaI ACNGT 3 cut(s) 655, 840, 852
TaiI ACGT 2 cut(s) 275, 810
TaqI TCGA 1 cut(s) 216
TasI AATT 4 cut(s) 71, 291, 468, 511
TatI WGTACW 2 cut(s) 79, 815
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 471, 588, 804, 883
Tru9I TTAA 4 cut(s) 471, 588, 804, 883
TscAI CASTG 2 cut(s) 487, 843
TseFI GTSAC 2 cut(s) 145, 415
TseI GCWGC 4 cut(s) 665, 668, 671, 674
Tsp45I GTSAC 2 cut(s) 145, 415
TspDTI ATGAA 1 cut(s) 873
TspRI CASTG 2 cut(s) 487, 843
VpaK11BI GGWCC 1 cut(s) 623
XceI RCATGY 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 2 cut(s) 143, 714
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.