MD07G1155100.v1.1

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011218
Physical Location & Seq
Forward (+)
22517463 .. 22519472
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1155100.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGGAGGGCTGTTTGTGTACACATTGTGGGCAGGCTACTTGGGTTGGCAATGGAGGAGAGTGAGGACAATCCAGGAAGAAATTAATGAGCTCAAGAAGCAGGTGAAGCCTACCCCTGTCACACCCGAGGGGACTCCAGCGGAAGCTTCCCCATCTCCTTTTGCACTCAAAATTCAGCAGCTCACTGAGGAAAGGAAGGAGTTGGTGAAAGGGTCTTACAGGGATAAACACTTCAACGCAGGATCGATATTGTTAGCTTTCGGAGTTTTTGAGTCGGTTGGTGGAGGACTCAACACTTGGTTTAGGACAGGAAAGCTATTTCCAGGTCCCCATTTGTTTGCTGGAGCAGCTATCACGGTATGGGCAGCGGCGGCATCTCTTACACCTGCAATGCAAAAGGGAAGTGAGACAGCCAGAAGCCTTCACATTGCATTGAATACGATAAACGTTTTGCTTTTCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

155

Amino Acids

16.91

Weight (kDa)

9.69

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 1 - 154 5.7e-32 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 91, 394
Acc36I ACCTGC 2 cut(s) 91, 394
AciI CCGC 3 cut(s) 140, 368, 371
AclI AACGTT 1 cut(s) 447
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 27
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 2 cut(s) 235, 436
AjnI CCWGG 2 cut(s) 72, 322
AluBI AGCT 6 cut(s) 91, 146, 181, 257, 316, 350
AluI AGCT 6 cut(s) 91, 146, 181, 257, 316, 350
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 178, 347, 365
ApoI RAATTY 1 cut(s) 171
AseI ATTAAT 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 115, 217
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 3 cut(s) 190, 359, 377
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 74, 324
BcoDI GTCTC 1 cut(s) 401
BfuAI ACCTGC 2 cut(s) 91, 394
BisI GCNGC 5 cut(s) 179, 348, 366, 369, 372
BlsI GCNGC 5 cut(s) 180, 349, 367, 370, 373
Bme1390I CCNGG 2 cut(s) 74, 324
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 74, 324
BmsI GCATC 1 cut(s) 383
BpmI CTGGAG 2 cut(s) 120, 363
BpuEI CTTGAG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 126
Bse3DI GCAATG 3 cut(s) 56, 396, 426
BseBI CCWGG 2 cut(s) 74, 324
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 126
BseMI GCAATG 3 cut(s) 56, 396, 426
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 3 cut(s) 190, 359, 377
BshVI ATCGAT 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 125
BslFI GGGAC 2 cut(s) 145, 312
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 2 cut(s) 145, 312
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 3 cut(s) 140, 368, 371
BspCNI CTCAG 1 cut(s) 178
BspDI ATCGAT 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 328
BspMI ACCTGC 2 cut(s) 91, 394
BspPI GGATC 1 cut(s) 250
BsrDI GCAATG 3 cut(s) 56, 396, 426
BsrGI TGTACA 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 74, 324
Bst4CI ACNGT 1 cut(s) 358
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 186
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 4 cut(s) 97, 106, 347, 371
BstNI CCWGG 2 cut(s) 74, 324
BstSCI CCNGG 2 cut(s) 72, 322
BstV1I GCAGC 3 cut(s) 190, 359, 377
Bsu15I ATCGAT 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 2 cut(s) 91, 394
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 245
Csp6I GTAC 1 cut(s) 19
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DraIII CACNNNGTG 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 72, 322
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 2 cut(s) 361, 463
FaqI GGGAC 2 cut(s) 145, 312
Fnu4HI GCNGC 5 cut(s) 179, 348, 366, 369, 372
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 179, 348, 366, 369, 372
GluI GCNGC 5 cut(s) 179, 348, 366, 369, 372
GsuI CTGGAG 2 cut(s) 120, 363
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 3 cut(s) 133, 272, 288
HphI GGTGA 2 cut(s) 115, 217
Hpy166II GTNNAC 2 cut(s) 19, 21
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 19, 21
HpyAV CCTTC 2 cut(s) 190, 431
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 4 cut(s) 164, 389, 394, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 106, 347, 371
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 447
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 3 cut(s) 190, 359, 377
LweI GCATC 1 cut(s) 383
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 2 cut(s) 81, 171
MlyI GAGTC 3 cut(s) 127, 281, 282
MnlI CCTC 5 cut(s) 48, 57, 121, 181, 278
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 140, 368
MspR9I CCNGG 2 cut(s) 74, 324
MvaI CCWGG 2 cut(s) 74, 324
MwoI GCNNNNNNNGC 4 cut(s) 97, 106, 347, 371
NdeII GATC 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 118
PaqCI CACCTGC 2 cut(s) 91, 394
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 5 cut(s) 180, 349, 367, 370, 373
PleI GAGTC 3 cut(s) 127, 280, 282
PpsI GAGTC 3 cut(s) 127, 280, 282
PpuMI RGGWCCY 1 cut(s) 326
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 72, 322
PspGI CCWGG 2 cut(s) 72, 322
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 5 cut(s) 179, 348, 366, 369, 372
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 3 cut(s) 127, 281, 282
ScrFI CCNGG 2 cut(s) 74, 324
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 1 cut(s) 383
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 81, 171
SsiI CCGC 3 cut(s) 140, 368, 371
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 72, 322
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 450
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 81, 171
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 371, 374
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 178, 347, 365
Tsp45I GTSAC 1 cut(s) 118
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 326
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.