Rw1G025880

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011218
Physical Location & Seq
Forward (+)
52692813 .. 52694360
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025880.1

Sequence Viewer

Length: 825 bp
ATGGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCCTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCACATTGCCATTCTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTTCACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCGACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAACGCGATAAACGTTCTGCTTTTCATATGGCAGATACCTACTGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

274

Amino Acids

30.14

Weight (kDa)

9.8

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 93 - 266 8.8e-46 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 694
AccII CGCG 1 cut(s) 740
AciI CCGC 3 cut(s) 5, 303, 355
AclI AACGTT 1 cut(s) 747
AclWI GGATC 1 cut(s) 547
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 2 cut(s) 81, 684
AgsI TTSAA 4 cut(s) 440, 467, 532, 806
AhlI ACTAGT 1 cut(s) 142
AluBI AGCT 7 cut(s) 18, 28, 176, 194, 388, 613, 671
AluI AGCT 7 cut(s) 18, 28, 176, 194, 388, 613, 671
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 1 cut(s) 547
AlwNI CAGNNNCTG 2 cut(s) 671, 674
AoxI GGCC 3 cut(s) 6, 327, 818
ApeKI GCWGC 4 cut(s) 665, 668, 671, 674
ApoI RAATTY 1 cut(s) 806
AspS9I GGNCC 4 cut(s) 217, 327, 623, 819
AsuC2I CCSGG 3 cut(s) 331, 518, 621
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 2 cut(s) 217, 623
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 4 cut(s) 658, 661, 677, 680
BccI CCATC 3 cut(s) 292, 419, 457
BceAI ACGGC 1 cut(s) 726
BcnI CCSGG 3 cut(s) 331, 518, 621
BcoDI GTCTC 1 cut(s) 701
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 2 cut(s) 143, 714
BfuAI ACCTGC 1 cut(s) 694
BisI GCNGC 5 cut(s) 6, 666, 669, 672, 675
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 5 cut(s) 7, 667, 670, 673, 676
Bme1390I CCNGG 3 cut(s) 331, 518, 621
Bme18I GGWCC 2 cut(s) 217, 623
BmgT120I GGNCC 4 cut(s) 217, 327, 623, 819
BmiI GGNNCC 3 cut(s) 219, 624, 625
BmrFI CCNGG 3 cut(s) 331, 518, 621
BmsI GCATC 3 cut(s) 72, 217, 657
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 3 cut(s) 8, 152, 374
BpuMI CCSGG 3 cut(s) 331, 518, 621
BsaJI CCNNGG 1 cut(s) 222
Bse1I ACTGG 3 cut(s) 434, 610, 781
Bse3DI GCAATG 4 cut(s) 200, 353, 696, 726
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 4 cut(s) 200, 353, 696, 726
BseMII CTCAG 2 cut(s) 28, 493
BseNI ACTGG 3 cut(s) 434, 610, 781
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 4 cut(s) 658, 661, 677, 680
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 3 cut(s) 8, 329, 820
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 3 cut(s) 330, 517, 620
BslFI GGGAC 2 cut(s) 442, 609
BsmAI GTCTC 1 cut(s) 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 442, 609
BsnI GGCC 3 cut(s) 8, 329, 820
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 539
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 3 cut(s) 5, 303, 355
BspANI GGCC 3 cut(s) 8, 329, 820
BspCNI CTCAG 2 cut(s) 27, 492
BspFNI CGCG 1 cut(s) 740
BspLI GGNNCC 3 cut(s) 219, 624, 625
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 468
BsrDI GCAATG 4 cut(s) 200, 353, 696, 726
BsrI ACTGG 3 cut(s) 434, 610, 781
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 186, 468
BstAPI GCANNNNNTGC 2 cut(s) 671, 674
BstC8I GCNNGC 3 cut(s) 344, 552, 646
BstDEI CTNAG 2 cut(s) 14, 479
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 740
BstKTI GATC 1 cut(s) 542
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
BstSCI CCNGG 3 cut(s) 329, 516, 619
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 4 cut(s) 658, 661, 677, 680
BsuRI GGCC 3 cut(s) 8, 329, 820
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 3 cut(s) 344, 552, 646
CaiI CAGNNNCTG 2 cut(s) 671, 674
Cfr13I GGNCC 4 cut(s) 217, 327, 623, 819
Csp6I GTAC 2 cut(s) 80, 683
CviAII CATG 1 cut(s) 594
CviQI GTAC 2 cut(s) 80, 683
DdeI CTNAG 2 cut(s) 14, 479
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
DraIII CACNNNGTG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 186, 468
EarI CTCTTC 2 cut(s) 186, 468
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 217, 623
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 806
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 1 cut(s) 597
FaiI YATR 5 cut(s) 595, 661, 761, 763, 788
FaqI GGGAC 2 cut(s) 442, 609
FatI CATG 1 cut(s) 593
FauI CCCGC 2 cut(s) 296, 348
FauNDI CATATG 1 cut(s) 761
Fnu4HI GCNGC 5 cut(s) 6, 666, 669, 672, 675
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 5 cut(s) 6, 666, 669, 672, 675
FspBI CTAG 2 cut(s) 143, 714
GluI GCNGC 5 cut(s) 6, 666, 669, 672, 675
HaeIII GGCC 3 cut(s) 8, 329, 820
HapII CCGG 3 cut(s) 330, 517, 620
Hin1II CATG 1 cut(s) 597
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 119, 477
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 330, 517, 620
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 361, 370, 391
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 5 cut(s) 50, 138, 261, 487, 731
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 272, 747
HpyCH4V TGCA 8 cut(s) 63, 230, 536, 638, 677, 689, 694, 731
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
HpyF3I CTNAG 2 cut(s) 14, 479
HpySE526I ACGT 2 cut(s) 272, 747
Hsp92II CATG 1 cut(s) 597
KflI GGGWCCC 1 cut(s) 623
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 1 cut(s) 539
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 4 cut(s) 658, 661, 677, 680
LweI GCATC 3 cut(s) 72, 217, 657
MaeI CTAG 2 cut(s) 143, 714
MaeII ACGT 2 cut(s) 272, 747
MaeIII GTNAC 2 cut(s) 145, 415
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 3 cut(s) 173, 202, 455
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 5 cut(s) 71, 291, 468, 511, 806
MlyI GAGTC 2 cut(s) 113, 471
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 2 cut(s) 471, 588
MslI CAYNNNNRTG 2 cut(s) 531, 653
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 3 cut(s) 330, 517, 620
MspR9I CCNGG 3 cut(s) 331, 518, 621
MunI CAATTG 1 cut(s) 291
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 6 cut(s) 352, 394, 403, 671, 674, 737
NciI CCSGG 3 cut(s) 331, 518, 621
NdeI CATATG 1 cut(s) 761
NdeII GATC 1 cut(s) 539
NlaIII CATG 1 cut(s) 597
NlaIV GGNNCC 3 cut(s) 219, 624, 625
NmuCI GTSAC 2 cut(s) 145, 415
NsiI ATGCAT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PkrI GCNGC 5 cut(s) 7, 667, 670, 673, 676
PleI GAGTC 2 cut(s) 113, 471
PpsI GAGTC 2 cut(s) 113, 471
PpuMI RGGWCCY 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 219, 624, 625
PspPI GGNCC 4 cut(s) 217, 327, 623, 819
PspPPI RGGWCCY 1 cut(s) 623
PstNI CAGNNNCTG 2 cut(s) 671, 674
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 81, 684
RsaNI GTAC 2 cut(s) 80, 683
RseI CAYNNNNRTG 2 cut(s) 531, 653
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 471, 588
SatI GCNGC 5 cut(s) 6, 666, 669, 672, 675
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 4 cut(s) 217, 327, 623, 819
SchI GAGTC 2 cut(s) 113, 471
ScrFI CCNGG 3 cut(s) 331, 518, 621
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 3 cut(s) 72, 217, 657
SinI GGWCC 2 cut(s) 217, 623
SmiMI CAYNNNNRTG 2 cut(s) 531, 653
SmlI CTYRAG 3 cut(s) 23, 167, 389
SmoI CTYRAG 3 cut(s) 23, 167, 389
SpeI ACTAGT 1 cut(s) 142
Sse9I AATT 5 cut(s) 71, 291, 468, 511, 806
SsiI CCGC 3 cut(s) 5, 303, 355
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 143, 714
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 329, 516, 619
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 275, 750
TasI AATT 5 cut(s) 71, 291, 468, 511, 806
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 471, 588
Tru9I TTAA 2 cut(s) 471, 588
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 145, 415
TseI GCWGC 4 cut(s) 665, 668, 671, 674
Tsp45I GTSAC 2 cut(s) 145, 415
TspDTI ATGAA 1 cut(s) 748
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 217, 623
XapI RAATTY 1 cut(s) 806
XspI CTAG 2 cut(s) 143, 714
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.