Rh1DG287100

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011218
Physical Location & Seq
Forward (+)
50931532 .. 50934365
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG287100.1

Sequence Viewer

Length: 606 bp
ATGCAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAACGCGATAAACGTTCTGCTTTTCATATGGCAGATACCTACTGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

201

Amino Acids

22.24

Weight (kDa)

9.26

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 20 - 193 2.8e-46 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccII CGCG 1 cut(s) 521
AciI CCGC 2 cut(s) 84, 136
AclI AACGTT 1 cut(s) 528
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 587
AdeI CACNNNGTG 1 cut(s) 105
AfaI GTAC 1 cut(s) 465
AgsI TTSAA 4 cut(s) 221, 248, 313, 587
AluBI AGCT 3 cut(s) 169, 394, 452
AluI AGCT 3 cut(s) 169, 394, 452
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 2 cut(s) 452, 455
AoxI GGCC 2 cut(s) 108, 599
ApeKI GCWGC 4 cut(s) 446, 449, 452, 455
ApoI RAATTY 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 108, 404
AsuC2I CCSGG 3 cut(s) 112, 299, 402
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 439, 442, 458, 461
BccI CCATC 3 cut(s) 73, 200, 238
BceAI ACGGC 1 cut(s) 507
BcnI CCSGG 3 cut(s) 112, 299, 402
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 4 cut(s) 447, 450, 453, 456
BlsI GCNGC 4 cut(s) 448, 451, 454, 457
Bme1390I CCNGG 3 cut(s) 112, 299, 402
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 108, 404
BmiI GGNNCC 2 cut(s) 405, 406
BmrFI CCNGG 3 cut(s) 112, 299, 402
BmsI GCATC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 3 cut(s) 112, 299, 402
Bse1I ACTGG 3 cut(s) 215, 391, 562
Bse3DI GCAATG 3 cut(s) 134, 477, 507
BseGI GGATG 1 cut(s) 13
BseMI GCAATG 3 cut(s) 134, 477, 507
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 215, 391, 562
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 4 cut(s) 439, 442, 458, 461
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 2 cut(s) 110, 601
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 3 cut(s) 111, 298, 401
BslFI GGGAC 2 cut(s) 223, 390
BsmAI GTCTC 1 cut(s) 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 2 cut(s) 223, 390
BsnI GGCC 2 cut(s) 110, 601
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 320
BspACI CCGC 2 cut(s) 84, 136
BspANI GGCC 2 cut(s) 110, 601
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 2 cut(s) 405, 406
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 249
BsrDI GCAATG 3 cut(s) 134, 477, 507
BsrI ACTGG 3 cut(s) 215, 391, 562
BssMI GATC 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 2 cut(s) 452, 455
BstC8I GCNNGC 3 cut(s) 125, 333, 427
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 320
BstMWI GCNNNNNNNGC 6 cut(s) 133, 175, 184, 452, 455, 518
BstSCI CCNGG 3 cut(s) 110, 297, 400
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 4 cut(s) 439, 442, 458, 461
BsuRI GGCC 2 cut(s) 110, 601
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 268
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 125, 333, 427
CaiI CAGNNNCTG 2 cut(s) 452, 455
Cfr13I GGNCC 2 cut(s) 108, 404
Csp6I GTAC 1 cut(s) 464
CviAII CATG 1 cut(s) 375
CviJI RGCY 9 cut(s) 110, 123, 169, 187, 394, 452, 494, 501, 601
CviKI_1 RGCY 9 cut(s) 110, 123, 169, 187, 394, 452, 494, 501, 601
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
DraIII CACNNNGTG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 1 cut(s) 378
FaiI YATR 5 cut(s) 376, 442, 542, 544, 569
FaqI GGGAC 2 cut(s) 223, 390
FatI CATG 1 cut(s) 374
FauI CCCGC 2 cut(s) 77, 129
FauNDI CATATG 1 cut(s) 542
Fnu4HI GCNGC 4 cut(s) 447, 450, 453, 456
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 447, 450, 453, 456
FspBI CTAG 1 cut(s) 495
GluI GCNGC 4 cut(s) 447, 450, 453, 456
HaeIII GGCC 2 cut(s) 110, 601
HapII CCGG 3 cut(s) 111, 298, 401
Hin1II CATG 1 cut(s) 378
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 3 cut(s) 111, 298, 401
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 97, 370
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 142, 151, 172
Hpy8I GTNNAC 2 cut(s) 97, 370
HpyAV CCTTC 3 cut(s) 42, 268, 512
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 2 cut(s) 53, 528
HpyCH4V TGCA 8 cut(s) 4, 11, 317, 419, 458, 470, 475, 512
HpyF10VI GCNNNNNNNGC 6 cut(s) 133, 175, 184, 452, 455, 518
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 53, 528
Hsp92II CATG 1 cut(s) 378
KflI GGGWCCC 1 cut(s) 404
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 1 cut(s) 320
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 4 cut(s) 439, 442, 458, 461
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 495
MaeII ACGT 2 cut(s) 53, 528
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 1 cut(s) 236
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 72, 249, 292, 587
MnlI CCTC 5 cut(s) 37, 126, 259, 343, 356
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 2 cut(s) 252, 369
MslI CAYNNNNRTG 2 cut(s) 312, 434
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 3 cut(s) 111, 298, 401
MspR9I CCNGG 3 cut(s) 112, 299, 402
MunI CAATTG 1 cut(s) 72
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 6 cut(s) 133, 175, 184, 452, 455, 518
NciI CCSGG 3 cut(s) 112, 299, 402
NdeI CATATG 1 cut(s) 542
NdeII GATC 1 cut(s) 320
NlaIII CATG 1 cut(s) 378
NlaIV GGNNCC 2 cut(s) 405, 406
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PkrI GCNGC 4 cut(s) 448, 451, 454, 457
PpuMI RGGWCCY 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 405, 406
PspPI GGNCC 2 cut(s) 108, 404
PspPPI RGGWCCY 1 cut(s) 404
PstNI CAGNNNCTG 2 cut(s) 452, 455
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 2 cut(s) 312, 434
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 252, 369
SatI GCNGC 4 cut(s) 447, 450, 453, 456
Sau3AI GATC 1 cut(s) 320
Sau96I GGNCC 2 cut(s) 108, 404
ScrFI CCNGG 3 cut(s) 112, 299, 402
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 56, 171, 396, 454, 469, 531, 556
SfaNI GCATC 1 cut(s) 438
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 312, 434
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 72, 249, 292, 587
SsiI CCGC 2 cut(s) 84, 136
SspMI CTAG 1 cut(s) 495
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 110, 297, 400
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 2 cut(s) 56, 531
TasI AATT 4 cut(s) 72, 249, 292, 587
Tru1I TTAA 2 cut(s) 252, 369
Tru9I TTAA 2 cut(s) 252, 369
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 4 cut(s) 446, 449, 452, 455
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 529
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 587
XspI CTAG 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.