Rh1CG275000

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011218
Physical Location & Seq
Forward (+)
54204306 .. 54207359
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG275000.1

Sequence Viewer

Length: 675 bp
ATGGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCCTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCACATTGCCATTCTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTTCACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCGACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGTAAAACATGTTGTGTGTGCAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

224

Amino Acids

24.55

Weight (kDa)

9.7

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 93 - 218 3.6e-24 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 635
AciI CCGC 3 cut(s) 5, 303, 355
AclWI GGATC 1 cut(s) 547
AcoI YGGCCR 1 cut(s) 6
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 653
AgsI TTSAA 3 cut(s) 440, 467, 532
AhlI ACTAGT 1 cut(s) 142
AluBI AGCT 6 cut(s) 18, 28, 176, 194, 388, 613
AluI AGCT 6 cut(s) 18, 28, 176, 194, 388, 613
Alw21I GWGCWC 1 cut(s) 390
AlwI GGATC 1 cut(s) 547
AoxI GGCC 2 cut(s) 6, 327
AspS9I GGNCC 3 cut(s) 217, 327, 623
AsuC2I CCSGG 3 cut(s) 331, 518, 621
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 2 cut(s) 217, 623
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BccI CCATC 3 cut(s) 292, 419, 457
BcnI CCSGG 3 cut(s) 331, 518, 621
BcuI ACTAGT 1 cut(s) 142
BfaI CTAG 2 cut(s) 143, 673
BfuAI ACCTGC 1 cut(s) 635
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 331, 518, 621
Bme18I GGWCC 2 cut(s) 217, 623
BmgT120I GGNCC 3 cut(s) 217, 327, 623
BmiI GGNNCC 3 cut(s) 219, 624, 625
BmrFI CCNGG 3 cut(s) 331, 518, 621
BmsI GCATC 2 cut(s) 72, 217
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 3 cut(s) 8, 152, 374
BpuMI CCSGG 3 cut(s) 331, 518, 621
BsaJI CCNNGG 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 434, 610
Bse3DI GCAATG 2 cut(s) 200, 353
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 2 cut(s) 200, 353
BseMII CTCAG 2 cut(s) 28, 493
BseNI ACTGG 2 cut(s) 434, 610
BseRI GAGGAG 1 cut(s) 597
BshFI GGCC 2 cut(s) 8, 329
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 3 cut(s) 330, 517, 620
BslFI GGGAC 2 cut(s) 442, 609
BsmFI GGGAC 2 cut(s) 442, 609
BsnI GGCC 2 cut(s) 8, 329
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 539
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 3 cut(s) 5, 303, 355
BspANI GGCC 2 cut(s) 8, 329
BspCNI CTCAG 2 cut(s) 27, 492
BspLI GGNNCC 3 cut(s) 219, 624, 625
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 200, 353
BsrI ACTGG 2 cut(s) 434, 610
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 186, 468
BstC8I GCNNGC 2 cut(s) 344, 552
BstDEI CTNAG 2 cut(s) 14, 479
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 542
BstMBI GATC 1 cut(s) 539
BstMWI GCNNNNNNNGC 3 cut(s) 352, 394, 403
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 3 cut(s) 329, 516, 619
BsuRI GGCC 2 cut(s) 8, 329
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 344, 552
Cfr13I GGNCC 3 cut(s) 217, 327, 623
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 594, 654
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 14, 479
DpnI GATC 1 cut(s) 541
DpnII GATC 1 cut(s) 539
DraIII CACNNNGTG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 186, 468
EarI CTCTTC 2 cut(s) 186, 468
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 217, 623
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 597, 657
FaiI YATR 2 cut(s) 595, 655
FaqI GGGAC 2 cut(s) 442, 609
FatI CATG 2 cut(s) 593, 653
FauI CCCGC 2 cut(s) 296, 348
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 143, 673
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 8, 329
HapII CCGG 3 cut(s) 330, 517, 620
Hin1II CATG 2 cut(s) 597, 657
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 119, 477
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 330, 517, 620
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 361, 370, 391
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 4 cut(s) 50, 138, 261, 487
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 5 cut(s) 63, 230, 536, 638, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 394, 403
HpyF3I CTNAG 2 cut(s) 14, 479
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 2 cut(s) 597, 657
KflI GGGWCCC 1 cut(s) 623
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 1 cut(s) 539
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 641
LweI GCATC 2 cut(s) 72, 217
MaeI CTAG 2 cut(s) 143, 673
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 145, 415
MalI GATC 1 cut(s) 541
MboI GATC 1 cut(s) 539
MboII GAAGA 3 cut(s) 173, 202, 455
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 4 cut(s) 71, 291, 468, 511
MlyI GAGTC 2 cut(s) 113, 471
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 2 cut(s) 471, 588
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 3 cut(s) 330, 517, 620
MspR9I CCNGG 3 cut(s) 331, 518, 621
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 352, 394, 403
NciI CCSGG 3 cut(s) 331, 518, 621
NdeII GATC 1 cut(s) 539
NlaIII CATG 2 cut(s) 597, 657
NlaIV GGNNCC 3 cut(s) 219, 624, 625
NmuCI GTSAC 2 cut(s) 145, 415
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 657
PciI ACATGT 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 468
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 113, 471
PpsI GAGTC 2 cut(s) 113, 471
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 219, 624, 625
PspPI GGNCC 3 cut(s) 217, 327, 623
PspPPI RGGWCCY 1 cut(s) 623
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 531
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 471, 588
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 539
Sau96I GGNCC 3 cut(s) 217, 327, 623
SchI GAGTC 2 cut(s) 113, 471
ScrFI CCNGG 3 cut(s) 331, 518, 621
SduI GDGCHC 1 cut(s) 390
SetI ASST 8 cut(s) 20, 30, 178, 196, 275, 390, 615, 649
SfaNI GCATC 2 cut(s) 72, 217
SinI GGWCC 2 cut(s) 217, 623
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 3 cut(s) 23, 167, 389
SmoI CTYRAG 3 cut(s) 23, 167, 389
SpeI ACTAGT 1 cut(s) 142
Sse9I AATT 4 cut(s) 71, 291, 468, 511
SsiI CCGC 3 cut(s) 5, 303, 355
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 143, 673
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 329, 516, 619
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 275
TasI AATT 4 cut(s) 71, 291, 468, 511
TatI WGTACW 1 cut(s) 79
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 471, 588
Tru9I TTAA 2 cut(s) 471, 588
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 2 cut(s) 145, 415
Tsp45I GTSAC 2 cut(s) 145, 415
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 217, 623
XceI RCATGY 1 cut(s) 657
XspI CTAG 2 cut(s) 143, 673
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.