Rroxscaffold_4G00295950

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011218
Physical Location & Seq
Reverse (-)
16048748 .. 16050818
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295950.1

Sequence Viewer

Length: 969 bp
ATGAAAACCAAAGCACAGCGAGCCAAATGGACACATTCCCGTCTCCTAATCTCACCTCTTATCTTCTCCACAACTCTAGAACCCTCTGTGCCTCTCTCTGCTCAAATACAAGCTCTGACGCAGAATGAGCATCGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTGCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTCCTTCCCCACAGAAACTAGTCACAACCACCCTCCACAGCCTCAAGTCTGCTTCCCTTCCCCTCACAGCTCTCACATTGCCATTTTTCTCCGACCCCAAGGCAAGTGCAATTCCGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTAGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTGTTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAACACGATAAACGTTCTGCTTTTCTTATGGCAGATACCTACTGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

322

Amino Acids

35.52

Weight (kDa)

9.74

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 140 - 314 5.9e-46 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 135, 447, 499
AclI AACGTT 1 cut(s) 891
AclWI GGATC 1 cut(s) 691
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 950
AdeI CACNNNGTG 1 cut(s) 468
AfaI GTAC 2 cut(s) 211, 828
AgsI TTSAA 4 cut(s) 584, 611, 676, 950
AhlI ACTAGT 1 cut(s) 272
AluBI AGCT 8 cut(s) 113, 148, 158, 324, 422, 532, 757, 815
AluI AGCT 8 cut(s) 113, 148, 158, 324, 422, 532, 757, 815
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 47, 845
AlwI GGATC 1 cut(s) 691
AlwNI CAGNNNCTG 2 cut(s) 815, 818
AoxI GGCC 3 cut(s) 136, 471, 962
ApeKI GCWGC 4 cut(s) 809, 812, 815, 818
ApoI RAATTY 1 cut(s) 950
AspS9I GGNCC 2 cut(s) 471, 767
AsuC2I CCSGG 3 cut(s) 475, 662, 765
AsuHPI GGTGA 2 cut(s) 45, 658
AvaII GGWCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 802, 805, 821, 824
BccI CCATC 3 cut(s) 436, 563, 601
BceAI ACGGC 1 cut(s) 870
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BcnI CCSGG 3 cut(s) 475, 662, 765
BcoDI GTCTC 2 cut(s) 47, 845
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 3 cut(s) 77, 273, 858
BfuAI ACCTGC 1 cut(s) 838
BisI GCNGC 5 cut(s) 136, 810, 813, 816, 819
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 5 cut(s) 137, 811, 814, 817, 820
Bme1390I CCNGG 3 cut(s) 475, 662, 765
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 471, 767
BmiI GGNNCC 2 cut(s) 768, 769
BmrFI CCNGG 3 cut(s) 475, 662, 765
BmsI GCATC 4 cut(s) 139, 202, 361, 801
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 3 cut(s) 138, 282, 518
BpuMI CCSGG 3 cut(s) 475, 662, 765
BsaJI CCNNGG 1 cut(s) 352
Bse1I ACTGG 3 cut(s) 578, 754, 925
Bse3DI GCAATG 4 cut(s) 330, 497, 840, 870
BseDI CCNNGG 1 cut(s) 352
BseMI GCAATG 4 cut(s) 330, 497, 840, 870
BseMII CTCAG 2 cut(s) 158, 637
BseNI ACTGG 3 cut(s) 578, 754, 925
BseRI GAGGAG 1 cut(s) 741
BseXI GCAGC 4 cut(s) 802, 805, 821, 824
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 138, 473, 964
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 3 cut(s) 474, 661, 764
BslFI GGGAC 2 cut(s) 586, 753
BsmAI GTCTC 2 cut(s) 47, 845
BsmBI CGTCTC 2 cut(s) 47, 845
BsmFI GGGAC 2 cut(s) 586, 753
BsnI GGCC 3 cut(s) 138, 473, 964
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 1 cut(s) 683
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 3 cut(s) 135, 447, 499
BspANI GGCC 3 cut(s) 138, 473, 964
BspCNI CTCAG 2 cut(s) 157, 636
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 768, 769
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 1 cut(s) 691
BspQI GCTCTTC 1 cut(s) 612
BsrDI GCAATG 4 cut(s) 330, 497, 840, 870
BsrI ACTGG 3 cut(s) 578, 754, 925
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 683
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 799
Bst6I CTCTTC 1 cut(s) 612
BstAPI GCANNNNNTGC 2 cut(s) 815, 818
BstC8I GCNNGC 4 cut(s) 21, 488, 696, 790
BstDEI CTNAG 2 cut(s) 144, 623
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 686
BstMAI GTCTC 2 cut(s) 47, 845
BstMBI GATC 1 cut(s) 683
BstMWI GCNNNNNNNGC 7 cut(s) 20, 127, 496, 538, 547, 815, 818
BstSCI CCNGG 3 cut(s) 473, 660, 763
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 4 cut(s) 802, 805, 821, 824
BsuRI GGCC 3 cut(s) 138, 473, 964
BtgZI GCGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 631
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 4 cut(s) 21, 488, 696, 790
CaiI CAGNNNCTG 2 cut(s) 815, 818
Cfr13I GGNCC 2 cut(s) 471, 767
CseI GACGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 210, 827
CviAII CATG 1 cut(s) 738
CviQI GTAC 2 cut(s) 210, 827
DdeI CTNAG 2 cut(s) 144, 623
DpnI GATC 1 cut(s) 685
DpnII GATC 1 cut(s) 683
DraIII CACNNNGTG 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 767
Eco53kI GAGCTC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 950
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 352
Esp3I CGTCTC 2 cut(s) 47, 845
FaeI CATG 1 cut(s) 741
FaiI YATR 4 cut(s) 739, 805, 907, 932
FaqI GGGAC 2 cut(s) 586, 753
FatI CATG 1 cut(s) 737
FauI CCCGC 2 cut(s) 440, 492
Fnu4HI GCNGC 5 cut(s) 136, 810, 813, 816, 819
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 5 cut(s) 136, 810, 813, 816, 819
FspBI CTAG 3 cut(s) 77, 273, 858
GluI GCNGC 5 cut(s) 136, 810, 813, 816, 819
HaeIII GGCC 3 cut(s) 138, 473, 964
HapII CCGG 3 cut(s) 474, 661, 764
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 741
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 3 cut(s) 474, 661, 764
HphI GGTGA 2 cut(s) 45, 658
Hpy166II GTNNAC 2 cut(s) 460, 733
Hpy188I TCNGA 4 cut(s) 117, 347, 370, 426
Hpy188III TCNNGA 4 cut(s) 77, 505, 514, 535
Hpy8I GTNNAC 2 cut(s) 460, 733
HpyAV CCTTC 5 cut(s) 268, 321, 405, 631, 875
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4IV ACGT 2 cut(s) 416, 891
HpyCH4V TGCA 9 cut(s) 193, 363, 374, 680, 782, 821, 833, 838, 875
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 127, 496, 538, 547, 815, 818
HpyF3I CTNAG 2 cut(s) 144, 623
HpySE526I ACGT 2 cut(s) 416, 891
Hsp92II CATG 1 cut(s) 741
KflI GGGWCCC 1 cut(s) 767
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 1 cut(s) 683
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 785
Lsp1109I GCAGC 4 cut(s) 802, 805, 821, 824
LweI GCATC 4 cut(s) 139, 202, 361, 801
MaeI CTAG 3 cut(s) 77, 273, 858
MaeII ACGT 2 cut(s) 416, 891
MaeIII GTNAC 2 cut(s) 275, 559
MalI GATC 1 cut(s) 685
MboI GATC 1 cut(s) 683
MboII GAAGA 2 cut(s) 55, 599
MfeI CAATTG 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 6 cut(s) 201, 364, 435, 612, 655, 950
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 370
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 615, 732
MslI CAYNNNNRTG 2 cut(s) 675, 797
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 3 cut(s) 474, 661, 764
MspR9I CCNGG 3 cut(s) 475, 662, 765
MunI CAATTG 1 cut(s) 435
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 7 cut(s) 20, 127, 496, 538, 547, 815, 818
NciI CCSGG 3 cut(s) 475, 662, 765
NdeII GATC 1 cut(s) 683
NlaIII CATG 1 cut(s) 741
NlaIV GGNNCC 2 cut(s) 768, 769
NmuCI GTSAC 2 cut(s) 275, 559
NsiI ATGCAT 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 612
PkrI GCNGC 5 cut(s) 137, 811, 814, 817, 820
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 534
Psp1406I AACGTT 1 cut(s) 891
Psp5II RGGWCCY 1 cut(s) 767
PspN4I GGNNCC 2 cut(s) 768, 769
PspPI GGNCC 2 cut(s) 471, 767
PspPPI RGGWCCY 1 cut(s) 767
PstNI CAGNNNCTG 2 cut(s) 815, 818
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 211, 828
RsaNI GTAC 2 cut(s) 210, 827
RseI CAYNNNNRTG 2 cut(s) 675, 797
SacI GAGCTC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 615, 732
SatI GCNGC 5 cut(s) 136, 810, 813, 816, 819
Sau3AI GATC 1 cut(s) 683
Sau96I GGNCC 2 cut(s) 471, 767
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 3 cut(s) 475, 662, 765
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 4 cut(s) 139, 202, 361, 801
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 675, 797
SmlI CTYRAG 3 cut(s) 153, 297, 533
SmoI CTYRAG 3 cut(s) 153, 297, 533
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 6 cut(s) 201, 364, 435, 612, 655, 950
SsiI CCGC 3 cut(s) 135, 447, 499
SspI AATATT 1 cut(s) 236
SspMI CTAG 3 cut(s) 77, 273, 858
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 473, 660, 763
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 799
TaiI ACGT 2 cut(s) 419, 894
TasI AATT 6 cut(s) 201, 364, 435, 612, 655, 950
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 615, 732
Tru9I TTAA 2 cut(s) 615, 732
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 2 cut(s) 275, 559
TseI GCWGC 4 cut(s) 809, 812, 815, 818
Tsp45I GTSAC 2 cut(s) 275, 559
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 1 cut(s) 950
XbaI TCTAGA 1 cut(s) 76
XspI CTAG 3 cut(s) 77, 273, 858
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.