Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Forward (+)

22951323 .. 22953265

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAATCAAGAAGATAAAGAGAAGCCTATTGAAGAAGCTTCTTCATCAATGGAGAGAGAACACATGTTCGACAAAGTAGTAACACCAAGCGACGTTGGCAAACTAAACCGACTCGTGATCCCTAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCACAACAAACGACAGCAACAAAGGTTTGCTTCTAAACTTCGAAGATCGAAGTGGAAACTCATGGAGGTTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGAGATTCTTGTAATAAAGACAAGCTTTACATCGATTGGAGGAGACGACCTAAGATTCCCGATCATCATCATCAGCAATTCGCCGGAGCTATGTTCCCTAGGTTTTACACTTTTCCTCATCCTCAGATGCCGACAAATTACGAAACTCACAACCTTTATCATCGATTTCATCAACGAGATCTAGGAATTGGATACTATGTGAGGTCAATGGAGAGGAGTCATCCAACGGCTGTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGCACAAGTGGCTTCAATGGCTTCGAGAGGAGAGAAGCGGTTAAGGCTGTTTGGTGTAGATATGGAGTGCGGAGGAGGAGGAGGGAGTGTGAATAGTACGGAGGAAGAGTCGTCGTCTTCCGGTGGTAGTATACCACGTGGCAGAGTTTCTATGGTTGGTGCTGGTTCTCTCCTCCAGTTGAGGTTAGTGAGCAGTGATGATGAGTCTTTAGTAGCAATGGAAGCTGCAAGTCTTGAGGATCATCACTTCTTTACAAAGAAAGGAAAACCTTCTTTGTCTTTTGATTTGGATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

299

Amino Acids

34.27

Weight (kDa)

8.72

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 128	4.6e-28	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	733
AciI	CCGC	2 cut(s)	640, 672
AclWI	GGATC	2 cut(s)	112, 849
AcvI	CACGTG	1 cut(s)	740
AfaI	GTAC	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	32, 575, 618
AluBI	AGCT	6 cut(s)	38, 261, 307, 361, 425, 827
AluI	AGCT	6 cut(s)	38, 261, 307, 361, 425, 827
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	312, 373
AlwI	GGATC	2 cut(s)	112, 849
ApeKI	GCWGC	1 cut(s)	827
Asp700I	GAANNNNTTC	1 cut(s)	871
AspA2I	CCTAGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	598
AsuII	TTCGAA	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	434
BauI	CACGAG	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	814
BceAI	ACGGC	2 cut(s)	270, 579
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	312, 373
BfaI	CTAG	2 cut(s)	435, 518
BfuI	GTATCC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	1 cut(s)	828
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	230, 284
BmsI	GCATC	3 cut(s)	301, 453, 582
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	2 cut(s)	336, 761
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	857
Bsa29I	ATCGAT	2 cut(s)	369, 499
BsaAI	YACGTR	1 cut(s)	740
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	8 cut(s)	217, 247, 309, 339, 675, 695, 705, 725
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	248, 778
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	402
BseCI	ATCGAT	2 cut(s)	369, 499
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	454, 556
BseJI	GATNNNNATC	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	248, 778
BseRI	GAGGAG	7 cut(s)	391, 565, 645, 690, 693, 696, 764
BseXI	GCAGC	1 cut(s)	814
BshVI	ATCGAT	2 cut(s)	369, 499
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	420, 584, 723
BsmAI	GTCTC	2 cut(s)	312, 373
BsmBI	CGTCTC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	117, 205, 397, 514, 841
BspACI	CCGC	2 cut(s)	640, 672
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	2 cut(s)	369, 499
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	230, 284
BspPI	GGATC	2 cut(s)	112, 849
BspT104I	TTCGAA	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	248, 778
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	117, 205, 397, 514, 841
BssNAI	GTATAC	1 cut(s)	734
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	734
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	702
BstBAI	YACGTR	1 cut(s)	740
BstBI	TTCGAA	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	123, 387, 459
BstF5I	GGATG	2 cut(s)	454, 556
BstKTI	GATC	5 cut(s)	120, 208, 400, 517, 844
BstMAI	GTCTC	2 cut(s)	312, 373
BstMBI	GATC	5 cut(s)	117, 205, 397, 514, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 611, 620, 646, 824
BstNSI	RCATGY	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	814
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BstZ17I	GTATAC	1 cut(s)	734
Bsu15I	ATCGAT	2 cut(s)	369, 499
BsuI	GTATCC	1 cut(s)	521
BsuTUI	ATCGAT	2 cut(s)	369, 499
BtsCI	GGATG	2 cut(s)	454, 556
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	583
ClaI	ATCGAT	2 cut(s)	369, 499
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	3 cut(s)	64, 222, 268
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	3 cut(s)	123, 387, 459
DpnI	GATC	5 cut(s)	119, 207, 399, 516, 843
DpnII	GATC	5 cut(s)	117, 205, 397, 514, 841
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco130I	CCWWGG	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	740
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	3 cut(s)	67, 225, 271
FaiI	YATR	9 cut(s)	65, 223, 264, 269, 428, 534, 665, 734, 755
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 345, 377
FatI	CATG	3 cut(s)	63, 221, 267
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	828
FokI	GGATG	2 cut(s)	441, 543
Fsp4HI	GCNGC	1 cut(s)	828
FspBI	CTAG	2 cut(s)	435, 518
GluI	GCNGC	1 cut(s)	828
GsuI	CTGGAG	2 cut(s)	336, 761
HapII	CCGG	3 cut(s)	420, 584, 723
Hin1II	CATG	3 cut(s)	67, 225, 271
HindIII	AAGCTT	3 cut(s)	36, 305, 359
HinfI	GANTC	8 cut(s)	4, 111, 341, 391, 553, 575, 710, 806
HpaII	CCGG	3 cut(s)	420, 584, 723
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	734
Hpy188I	TCNGA	2 cut(s)	336, 462
Hpy188III	TCNNGA	6 cut(s)	8, 115, 268, 395, 627, 836
Hpy8I	GTNNAC	1 cut(s)	734
Hpy99I	CGWCG	2 cut(s)	95, 718
HpyAV	CCTTC	1 cut(s)	882
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	93, 739
HpyCH4V	TGCA	2 cut(s)	595, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 611, 620, 646, 824
HpyF3I	CTNAG	3 cut(s)	123, 387, 459
HpySE526I	ACGT	2 cut(s)	93, 739
Hsp92II	CATG	3 cut(s)	67, 225, 271
Kzo9I	GATC	5 cut(s)	117, 205, 397, 514, 841
LmnI	GCTCC	2 cut(s)	282, 422
LpnPI	CCDG	7 cut(s)	229, 300, 433, 597, 736, 750, 791
Lsp1109I	GCAGC	1 cut(s)	814
LweI	GCATC	3 cut(s)	301, 453, 582
MaeI	CTAG	2 cut(s)	435, 518
MaeII	ACGT	2 cut(s)	93, 739
MaeIII	GTNAC	2 cut(s)	79, 233
MalI	GATC	5 cut(s)	119, 207, 399, 516, 843
MboI	GATC	5 cut(s)	117, 205, 397, 514, 841
MboII	GAAGA	6 cut(s)	23, 33, 44, 215, 711, 719
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	3 cut(s)	413, 472, 522
MlyI	GAGTC	4 cut(s)	105, 562, 719, 815
MmeI	TCCRAC	2 cut(s)	260, 584
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	1 cut(s)	644
MspI	CCGG	3 cut(s)	420, 584, 723
MwoI	GCNNNNNNNGC	5 cut(s)	96, 611, 620, 646, 824
NdeII	GATC	5 cut(s)	117, 205, 397, 514, 841
NlaIII	CATG	3 cut(s)	67, 225, 271
NlaIV	GGNNCC	2 cut(s)	230, 284
NspI	RCATGY	1 cut(s)	67
NspV	TTCGAA	1 cut(s)	201
PagI	TCATGA	1 cut(s)	267
PciI	ACATGT	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	4 cut(s)	4, 341, 391, 575
PkrI	GCNGC	1 cut(s)	829
PleI	GAGTC	4 cut(s)	105, 561, 718, 814
PmaCI	CACGTG	1 cut(s)	740
PmlI	CACGTG	1 cut(s)	740
PpsI	GAGTC	4 cut(s)	105, 561, 718, 814
Ppu21I	YACGTR	1 cut(s)	740
PscI	ACATGT	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	230, 284
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	1 cut(s)	828
Sau3AI	GATC	5 cut(s)	117, 205, 397, 514, 841
SchI	GAGTC	4 cut(s)	105, 562, 719, 815
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	3 cut(s)	301, 453, 582
SfuI	TTCGAA	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	3 cut(s)	413, 472, 522
SsiI	CCGC	2 cut(s)	640, 672
SspMI	CTAG	2 cut(s)	435, 518
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	2 cut(s)	96, 742
TaqI	TCGA	6 cut(s)	69, 201, 208, 369, 499, 626
TasI	AATT	3 cut(s)	413, 472, 522
TfiI	GAWTC	4 cut(s)	4, 341, 391, 575
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	1 cut(s)	802
TseI	GCWGC	1 cut(s)	827
TspDTI	ATGAA	3 cut(s)	17, 33, 494
TspGWI	ACGGA	2 cut(s)	221, 716
TspRI	CASTG	1 cut(s)	802
XceI	RCATGY	1 cut(s)	67
XmaJI	CCTAGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	2 cut(s)	435, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.