Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Forward (+)

15099088 .. 15101491

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGTACTATGTGAAAGGAGATAAAAAAGGGTACTCAGAGAAAGAAGAAGATCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGATCATCATCATCCTCCCAAACCGCAGAAGCTATAAACTTCATGGACTTGTCAATAAGAAGTGCGAAAGACGATGATAACAGCAACAAGAACGATTGGCCACCAAACAGTGAGCGAGAGCACATGTTCGACAAAGTAGTTACCCCAAGCGATGTGGGCAAGCTCAACCGTCTAGTAATCCCAAAACAACATGCCGAGAAGTACTTCCCGCTCGATTCGTCCGCCAATGAGAAGGGTCTGTTACTTAACTTCCAGGACCGGACAGGGAAGCCATGGCGGTTCAGATACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCCGGTGACATTGTGTCCTTCGAGAGGAGTGTAAGCGACTCAAATGTCTTGTACATTGACTGGAGACGCCGCCCTCCGCCTCCCCTACCGCCTAATCAAGCCTCTTACTGGGGAGGCGGAGGGCGGTTCTACTCGCTGCAGCGGACTCCATCAATGTCAATGCCGCTTCGGCATCACGAGCAATTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAACCCTTACCAATTGCAGCAGCAGCATCACCAGCATCAACAGTACTACCACCAGAGCGGAATTAGTCCCGCAGTGGTGATTGATTCAGTGCCATTGGTCCAACATCACCCCCATCACCATGTTAAAACAATGAGTCCCACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTGCAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAACATCATCATCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGCCCGGTGCAGCTGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

378

Amino Acids

43.78

Weight (kDa)

6.71

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	84 - 186	4e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccBSI	CCGCTC	2 cut(s)	334, 780
AclWI	GGATC	2 cut(s)	133, 1121
AcoI	YGGCCR	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	6 cut(s)	8, 35, 101, 326, 539, 767
AfiI	CCNNNNNNNGG	4 cut(s)	453, 510, 594, 1064
AflIII	ACRYGT	1 cut(s)	246
AhdI	GACNNNNNGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	6 cut(s)	155, 286, 435, 481, 1073, 1081
AluI	AGCT	6 cut(s)	155, 286, 435, 481, 1073, 1081
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	2 cut(s)	133, 1121
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	9 cut(s)	622, 625, 739, 742, 745, 1039, 1052, 1070, 1081
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	379, 820
AsuC2I	CCSGG	1 cut(s)	1065
AsuHPI	GGTGA	8 cut(s)	503, 677, 692, 743, 811, 821, 830, 989
AvaII	GGWCC	2 cut(s)	379, 820
BalI	TGGCCA	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	1126
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	78, 942
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	9 cut(s)	609, 637, 751, 754, 757, 1026, 1039, 1068, 1082
BccI	CCATC	4 cut(s)	643, 696, 705, 843
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	1 cut(s)	1065
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	655
BmcAI	AGTACT	4 cut(s)	8, 101, 326, 767
Bme1390I	CCNGG	2 cut(s)	377, 1065
Bme18I	GGWCC	2 cut(s)	379, 820
BmeRI	GACNNNNNGTC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	379, 820
BmiI	GGNNCC	2 cut(s)	458, 1128
BmrFI	CCNGG	2 cut(s)	377, 1065
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	4 cut(s)	475, 667, 757, 766
BmuI	ACTGGG	1 cut(s)	604
BpiI	GAAGAC	2 cut(s)	78, 942
BpmI	CTGGAG	3 cut(s)	475, 568, 1049
Bpu10I	CCTNAGC	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	1065
BsaBI	GATNNNNATC	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	4 cut(s)	453, 510, 594, 1064
Bse118I	RCCGGY	2 cut(s)	459, 488
Bse1I	ACTGG	4 cut(s)	422, 551, 599, 703
Bse8I	GATNNNNATC	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	134, 688
BseJI	GATNNNNATC	1 cut(s)	130
BseLI	CCNNNNNNNGG	4 cut(s)	453, 510, 594, 1064
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	4 cut(s)	422, 551, 599, 703
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	9 cut(s)	609, 637, 751, 754, 757, 1026, 1039, 1068, 1082
BsgI	GTGCAG	2 cut(s)	925, 1089
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	382, 460, 489, 1065
BslFI	GGGAC	2 cut(s)	774, 843
BslI	CCNNNNNNNGG	4 cut(s)	453, 510, 594, 1064
BsmAI	GTCTC	1 cut(s)	544
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	774, 843
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	52, 125, 1075, 1126
Bsp19I	CCATGG	1 cut(s)	395
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	458, 1128
BspMAI	CTGCAG	1 cut(s)	627
BspPI	GGATC	2 cut(s)	133, 1121
BsrBI	CCGCTC	2 cut(s)	334, 780
BsrFI	RCCGGY	2 cut(s)	459, 488
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	4 cut(s)	422, 551, 599, 703
BssAI	RCCGGY	2 cut(s)	459, 488
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	4 cut(s)	52, 125, 1075, 1126
BssNI	GRCGYC	1 cut(s)	553
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	6 cut(s)	95, 233, 293, 425, 765, 958
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	553
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	37, 878
BstDSI	CCRYGG	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	134, 688
BstKTI	GATC	4 cut(s)	55, 128, 1078, 1129
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	4 cut(s)	52, 125, 1075, 1126
BstMWI	GCNNNNNNNGC	6 cut(s)	279, 655, 664, 745, 754, 880
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	250, 317
BstSCI	CCNGG	2 cut(s)	375, 1063
BstSFI	CTRYAG	1 cut(s)	623
BstV1I	GCAGC	9 cut(s)	609, 637, 751, 754, 757, 1026, 1039, 1068, 1082
BstV2I	GAAGAC	2 cut(s)	78, 942
BstX2I	RGATCY	1 cut(s)	1126
BstYI	RGATCY	1 cut(s)	1126
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	134, 688
BtsI	GCAGTG	2 cut(s)	801, 1058
BtsIMutI	CAGTG	5 cut(s)	238, 801, 816, 963, 1058
Cac8I	GCNNGC	1 cut(s)	284
Cfr10I	RCCGGY	2 cut(s)	459, 488
Cfr13I	GGNCC	2 cut(s)	379, 820
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	6 cut(s)	7, 34, 100, 325, 538, 766
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	6 cut(s)	166, 247, 314, 396, 842, 898
CviQI	GTAC	6 cut(s)	7, 34, 100, 325, 538, 766
DdeI	CTNAG	2 cut(s)	37, 878
DpnI	GATC	4 cut(s)	54, 127, 1077, 1128
DpnII	GATC	4 cut(s)	52, 125, 1075, 1126
DrdI	GACNNNNNNGTC	1 cut(s)	530
DriI	GACNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	3 cut(s)	334, 552, 618
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	379, 820
EcoNI	CCTNNNNNAGG	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	6 cut(s)	169, 250, 317, 399, 845, 901
FaqI	GGGAC	2 cut(s)	774, 843
FatI	CATG	6 cut(s)	165, 246, 313, 395, 841, 897
FauI	CCCGC	2 cut(s)	339, 799
FbaI	TGATCA	1 cut(s)	1075
FokI	GGATG	2 cut(s)	121, 675
FspBI	CTAG	1 cut(s)	296
GsuI	CTGGAG	3 cut(s)	475, 568, 1049
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	4 cut(s)	382, 460, 489, 1065
HgaI	GACGC	1 cut(s)	561
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	6 cut(s)	169, 250, 317, 399, 845, 901
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	5 cut(s)	338, 524, 631, 806, 856
HpaII	CCGG	4 cut(s)	382, 460, 489, 1065
HphI	GGTGA	8 cut(s)	503, 677, 692, 743, 811, 821, 830, 989
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188I	TCNGA	5 cut(s)	40, 407, 720, 942, 1090
Hpy188III	TCNNGA	4 cut(s)	56, 508, 662, 1028
Hpy8I	GTNNAC	1 cut(s)	895
HpyAV	CCTTC	5 cut(s)	120, 349, 514, 1010, 1014
HpyCH4III	ACNGT	6 cut(s)	95, 233, 293, 425, 765, 958
HpyCH4V	TGCA	5 cut(s)	625, 739, 906, 916, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	279, 655, 664, 745, 754, 880
HpyF3I	CTNAG	2 cut(s)	37, 878
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	6 cut(s)	169, 250, 317, 399, 845, 901
Ksp22I	TGATCA	1 cut(s)	1075
Kzo9I	GATC	4 cut(s)	52, 125, 1075, 1126
LmnI	GCTCC	1 cut(s)	456
Lsp1109I	GCAGC	9 cut(s)	609, 637, 751, 754, 757, 1026, 1039, 1068, 1082
LweI	GCATC	4 cut(s)	475, 667, 757, 766
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	262, 363, 491
MalI	GATC	4 cut(s)	54, 127, 1077, 1128
MbiI	CCGCTC	2 cut(s)	334, 780
MboI	GATC	4 cut(s)	52, 125, 1075, 1126
MfeI	CAATTG	1 cut(s)	734
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	5 cut(s)	118, 668, 734, 783, 1045
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	3 cut(s)	518, 625, 865
MmeI	TCCRAC	1 cut(s)	847
MnlI	CCTC	9 cut(s)	55, 148, 504, 570, 576, 593, 598, 599, 1035
Mox20I	TGGCCA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	4 cut(s)	90, 369, 846, 1034
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	223
MspA1I	CMGCKG	3 cut(s)	628, 1073, 1081
MspI	CCGG	4 cut(s)	382, 460, 489, 1065
MspR9I	CCNGG	2 cut(s)	377, 1065
MunI	CAATTG	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	6 cut(s)	279, 655, 664, 745, 754, 880
NciI	CCSGG	1 cut(s)	1065
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	52, 125, 1075, 1126
NlaIII	CATG	6 cut(s)	169, 250, 317, 399, 845, 901
NlaIV	GGNNCC	2 cut(s)	458, 1128
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	2 cut(s)	250, 317
PciI	ACATGT	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	338, 806
PflMI	CCANNNNNTGG	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	375
PleI	GAGTC	3 cut(s)	518, 625, 864
PpsI	GAGTC	3 cut(s)	518, 625, 864
PscI	ACATGT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	458, 1128
PspPI	GGNCC	2 cut(s)	379, 820
PstI	CTGCAG	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	1126
PvuII	CAGCTG	2 cut(s)	1073, 1081
RsaI	GTAC	6 cut(s)	8, 35, 101, 326, 539, 767
RsaNI	GTAC	6 cut(s)	7, 34, 100, 325, 538, 766
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	90, 369, 846, 1034
Sau3AI	GATC	4 cut(s)	52, 125, 1075, 1126
Sau96I	GGNCC	2 cut(s)	379, 820
ScaI	AGTACT	4 cut(s)	8, 101, 326, 767
SchI	GAGTC	3 cut(s)	518, 625, 865
ScrFI	CCNGG	2 cut(s)	377, 1065
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	157, 288, 437, 483, 1002, 1027, 1075, 1083
SfaNI	GCATC	4 cut(s)	475, 667, 757, 766
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	2 cut(s)	379, 820
SmiMI	CAYNNNNRTG	1 cut(s)	840
Sse9I	AATT	5 cut(s)	118, 668, 734, 783, 1045
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	375, 1063
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	6 cut(s)	95, 233, 293, 425, 765, 958
TaqI	TCGA	3 cut(s)	252, 336, 507
TasI	AATT	5 cut(s)	118, 668, 734, 783, 1045
TatI	WGTACW	5 cut(s)	6, 99, 324, 537, 765
TauI	GCSGC	3 cut(s)	558, 652, 877
TfiI	GAWTC	2 cut(s)	338, 806
Tru1I	TTAA	4 cut(s)	90, 369, 846, 1034
Tru9I	TTAA	4 cut(s)	90, 369, 846, 1034
TscAI	CASTG	5 cut(s)	238, 801, 816, 963, 1065
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	9 cut(s)	622, 625, 739, 742, 745, 1039, 1052, 1070, 1081
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	4 cut(s)	154, 662, 737, 939
TspRI	CASTG	5 cut(s)	238, 801, 816, 963, 1065
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	379, 820
XagI	CCTNNNNNAGG	1 cut(s)	508
XceI	RCATGY	2 cut(s)	250, 317
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	4 cut(s)	8, 101, 326, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.