pycom01g11570

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
12585351 .. 12586759
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11570.2

Sequence Viewer

Length: 1332 bp
ATGCAAGCCAGGTTTTGGATAATATTGCAAATCATTGTGATAGAATATAACAAGATCATGGACTTTATGCAAAGAGATCAAAAGGGGTATTCTGACAAAGAAGATCAAGATCAAGAACAAGAAGATCAAGAGGAAGAGGAGGATATAATCACCACAAGTAACAGCAATTCTGGGTCCTCACCAAAGTACAAAGGCATCCTTCTTCCTCCGCCTCCTCCGCACTACCACCAGCAGTACGGCCAGCAAAAGCCGTGGCTTGATGCTCAGAATCACAGCTCTCCGGAAGCCATCAACTTCATGGACTTATCACTAAACAAAGATCAGGTTTCTGATGGTGGTACGGACCCGAATTACTGGCCTCCTAATTCTGAAAGAGAGCACATGTTTGACAAGGTTGTGACGCCAAGCGATGTTGGGAAGCTCAACCGCCTGGTCATTCCGAAGCAGCACGCGGAGCGGTACTTCCCACTTGACTCCTCATCGAACGACAAGGGCTTGCTTTTGAATTTCCAAGACCGGACGGGAAAGCCGTGGCGGTTTAGGTACTCTTATTGGAATAGCAGCCAGAGCTATGTCATGACAAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTATCGTTTGAGCGAGGGGTTGGGGAATTGGGGAAGGACAGATTGTACATTGACTGGAGGCGCCGTCCTCCCCCTTCTCTTCCGCCTCAACTACATCCTCATAACCATTATGGCGGAGGCAGGCTTTACTCGCTACTGCAGCGGCCGCTGCCTTCTTCTGTGATGTCATCTATGCCTCTTAGACACCACGAACATTTTCTTCACTCGAACAACAATGTTCATCATCCGTACCACCACCAGCATCACAACTATCAGATCATGAATCAACAATATTTACCGCATCAGCTTCATCAATTGCAAGGTGGGAGGGATCAACATGTGATTCATCATCAATATCCAATGGTGATCGATTCGGTGCGTTTTTATCAACATGGTAATTATAAGAATAGTGCTACTAGTACCAGTAGTGCTAGTGTTGCTTCATCAGCTGGTAAGAAGCTTAGGCTTTTTGGTGTGAACATGGAATGCTCAAGTAGTCCAATTGAAGAGGATGATCATCAAGAATGTCAAATATTGTCTTCAACAGCAATACCCTATCAACCTCATCATCATCATCTTCCATCATCGACATCTTCACTGGCTTTTCCTCCACTCGAATTCATTAGGCTGCCCAATACAAGTAGTAGTAGTACTCCACCAGATCATCACTTCCCCTCAAACAAAGGGAAATCTACAACTTCGTTTTATTTGGATCCCTAG

Protein Analysis

444

Amino Acids

51.17

Weight (kDa)

6.68

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1014
AccB1I GGYRCC 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 1 cut(s) 452
AccIII TCCGGA 1 cut(s) 280
AclWI GGATC 2 cut(s) 951, 1319
AcoI YGGCCR 2 cut(s) 238, 776
AcsI RAATTY 2 cut(s) 505, 1229
AcyI GRCGYC 2 cut(s) 401, 694
AfaI GTAC 9 cut(s) 188, 236, 340, 461, 545, 680, 863, 1033, 1264
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 2 cut(s) 381, 949
AgsI TTSAA 3 cut(s) 505, 1118, 1155
AhlI ACTAGT 1 cut(s) 1028
AjnI CCWGG 2 cut(s) 8, 429
AluBI AGCT 7 cut(s) 276, 421, 570, 616, 919, 1061, 1072
AluI AGCT 7 cut(s) 276, 421, 570, 616, 919, 1061, 1072
Alw21I GWGCWC 1 cut(s) 381
AlwI GGATC 2 cut(s) 951, 1319
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 3 cut(s) 238, 356, 776
ApeKI GCWGC 5 cut(s) 445, 561, 772, 781, 1240
ApoI RAATTY 2 cut(s) 505, 1229
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 2 cut(s) 174, 343
AsuHPI GGTGA 4 cut(s) 142, 171, 638, 988
AvaII GGWCC 2 cut(s) 174, 343
BamHI GGATCC 1 cut(s) 1324
BanI GGYRCC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 1143
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 457, 573, 768, 784, 1227
BccI CCATC 3 cut(s) 296, 326, 1201
BceAI ACGGC 5 cut(s) 235, 253, 514, 579, 681
BciT130I CCWGG 2 cut(s) 10, 431
BclI TGATCA 1 cut(s) 1126
BcuI ACTAGT 1 cut(s) 1028
BfaI CTAG 3 cut(s) 1029, 1044, 1330
BfmI CTRYAG 1 cut(s) 770
BfoI RGCGCY 1 cut(s) 697
BisI GCNGC 7 cut(s) 446, 562, 773, 776, 779, 782, 1241
BlsI GCNGC 7 cut(s) 447, 563, 774, 777, 780, 783, 1242
BmcAI AGTACT 1 cut(s) 1264
Bme1390I CCNGG 2 cut(s) 10, 431
Bme18I GGWCC 2 cut(s) 174, 343
BmgT120I GGNCC 2 cut(s) 174, 343
BmiI GGNNCC 5 cut(s) 175, 345, 593, 695, 1326
BmrFI CCNGG 2 cut(s) 10, 431
BmsI GCATC 5 cut(s) 204, 250, 610, 883, 922
BpiI GAAGAC 1 cut(s) 1143
BpmI CTGGAG 1 cut(s) 709
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 1 cut(s) 1087
Bsa29I ATCGAT 1 cut(s) 981
BsaBI GATNNNNATC 2 cut(s) 108, 1128
BsaHI GRCGYC 2 cut(s) 401, 694
BsaJI CCNNGG 2 cut(s) 251, 530
BsaWI WCCGGW 2 cut(s) 280, 516
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 4 cut(s) 359, 692, 1035, 1215
Bse8I GATNNNNATC 2 cut(s) 108, 1128
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 10, 431
BseCI ATCGAT 1 cut(s) 981
BseDI CCNNGG 2 cut(s) 251, 530
BseGI GGATG 5 cut(s) 195, 625, 727, 856, 1129
BseJI GATNNNNATC 2 cut(s) 108, 1128
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 4 cut(s) 359, 692, 1035, 1215
BseRI GAGGAG 3 cut(s) 152, 204, 466
BseX3I CGGCCG 1 cut(s) 776
BseXI GCAGC 5 cut(s) 457, 573, 768, 784, 1227
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 779
BshFI GGCC 3 cut(s) 240, 358, 778
BshNI GGYRCC 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 981
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 3 cut(s) 281, 517, 624
BslI CCNNNNNNNGG 1 cut(s) 15
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 3 cut(s) 240, 358, 778
Bsp1286I GDGCHC 1 cut(s) 381
Bsp13I TCCGGA 1 cut(s) 280
Bsp1407I TGTACA 1 cut(s) 678
BspANI GGCC 3 cut(s) 240, 358, 778
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 981
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 452
BspHI TCATGA 2 cut(s) 576, 891
BspLI GGNNCC 5 cut(s) 175, 345, 593, 695, 1326
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 2 cut(s) 951, 1319
BspT107I GGYRCC 1 cut(s) 693
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 623
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 4 cut(s) 359, 692, 1035, 1215
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 251, 530
BssNI GRCGYC 2 cut(s) 401, 694
Bst2UI CCWGG 2 cut(s) 10, 431
Bst6I CTCTTC 3 cut(s) 129, 717, 1113
BstACI GRCGYC 2 cut(s) 401, 694
BstAUI TGTACA 1 cut(s) 678
BstC8I GCNNGC 5 cut(s) 6, 242, 450, 497, 755
BstDEI CTNAG 3 cut(s) 264, 812, 1073
BstDSI CCRYGG 2 cut(s) 251, 530
BstF5I GGATG 5 cut(s) 195, 625, 727, 856, 1129
BstFNI CGCG 1 cut(s) 452
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 1 cut(s) 696
BstMCI CGRYCG 1 cut(s) 779
BstMWI GCNNNNNNNGC 9 cut(s) 217, 454, 567, 763, 772, 778, 781, 1049, 1058
BstNI CCWGG 2 cut(s) 10, 431
BstNSI RCATGY 2 cut(s) 385, 953
BstSCI CCNGG 2 cut(s) 8, 429
BstSFI CTRYAG 1 cut(s) 770
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 5 cut(s) 457, 573, 768, 784, 1227
BstV2I GAAGAC 1 cut(s) 1143
BstX2I RGATCY 1 cut(s) 1324
BstYI RGATCY 1 cut(s) 1324
BstZI CGGCCG 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 981
BsuRI GGCC 3 cut(s) 240, 358, 778
BsuTUI ATCGAT 1 cut(s) 981
BtgI CCRYGG 2 cut(s) 251, 530
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 5 cut(s) 195, 625, 727, 856, 1129
BtsIMutI CAGTG 1 cut(s) 1208
Cac8I GCNNGC 5 cut(s) 6, 242, 450, 497, 755
CciI TCATGA 2 cut(s) 576, 891
CciNI GCGGCCGC 1 cut(s) 776
CfoI GCGC 1 cut(s) 696
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 174, 343
ClaI ATCGAT 1 cut(s) 981
CseI GACGC 1 cut(s) 409
Csp6I GTAC 9 cut(s) 187, 235, 339, 460, 544, 679, 862, 1032, 1263
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 8 cut(s) 58, 298, 382, 577, 892, 950, 1004, 1093
CviQI GTAC 9 cut(s) 187, 235, 339, 460, 544, 679, 862, 1032, 1263
DdeI CTNAG 3 cut(s) 264, 812, 1073
DinI GGCGCC 1 cut(s) 695
EaeI YGGCCR 2 cut(s) 238, 776
EagI CGGCCG 1 cut(s) 776
Eam1104I CTCTTC 3 cut(s) 129, 717, 1113
EarI CTCTTC 3 cut(s) 129, 717, 1113
EciI GGCGGA 3 cut(s) 198, 705, 762
EclXI CGGCCG 1 cut(s) 776
Eco47I GGWCC 2 cut(s) 174, 343
Eco52I CGGCCG 1 cut(s) 776
EcoO109I RGGNCCY 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 1229
EcoRII CCWGG 2 cut(s) 8, 429
EgeI GGCGCC 1 cut(s) 695
EheI GGCGCC 1 cut(s) 695
FaeI CATG 8 cut(s) 61, 301, 385, 580, 895, 953, 1007, 1096
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 8 cut(s) 57, 297, 381, 576, 891, 949, 1003, 1092
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 7 cut(s) 446, 562, 773, 776, 779, 782, 1241
FokI GGATG 5 cut(s) 182, 632, 714, 843, 1136
Fsp4HI GCNGC 7 cut(s) 446, 562, 773, 776, 779, 782, 1241
FspBI CTAG 3 cut(s) 1029, 1044, 1330
GlaI GCGC 1 cut(s) 695
GluI GCNGC 7 cut(s) 446, 562, 773, 776, 779, 782, 1241
GsuI CTGGAG 1 cut(s) 709
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 3 cut(s) 240, 358, 778
HapII CCGG 3 cut(s) 281, 517, 624
HgaI GACGC 1 cut(s) 409
HhaI GCGC 1 cut(s) 696
Hin1I GRCGYC 2 cut(s) 401, 694
Hin1II CATG 8 cut(s) 61, 301, 385, 580, 895, 953, 1007, 1096
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 5 cut(s) 268, 473, 895, 955, 983
HpaII CCGG 3 cut(s) 281, 517, 624
HphI GGTGA 4 cut(s) 142, 171, 638, 988
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188I TCNGA 6 cut(s) 94, 267, 331, 370, 441, 888
Hpy188III TCNNGA 7 cut(s) 107, 113, 128, 281, 577, 892, 1133
Hpy8I GTNNAC 1 cut(s) 1090
HpyAV CCTTC 5 cut(s) 209, 598, 661, 717, 795
HpyCH4V TGCA 5 cut(s) 4, 28, 70, 772, 931
HpyF10VI GCNNNNNNNGC 9 cut(s) 217, 454, 567, 763, 772, 778, 781, 1049, 1058
HpyF3I CTNAG 3 cut(s) 264, 812, 1073
Hsp92I GRCGYC 2 cut(s) 401, 694
Hsp92II CATG 8 cut(s) 61, 301, 385, 580, 895, 953, 1007, 1096
HspAI GCGC 1 cut(s) 694
KasI GGCGCC 1 cut(s) 693
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 1126
LmnI GCTCC 2 cut(s) 454, 591
Lsp1109I GCAGC 5 cut(s) 457, 573, 768, 784, 1227
LweI GCATC 5 cut(s) 204, 250, 610, 883, 922
MaeI CTAG 3 cut(s) 1029, 1044, 1330
MaeIII GTNAC 3 cut(s) 158, 397, 626
MbiI CCGCTC 1 cut(s) 457
MfeI CAATTG 2 cut(s) 926, 1113
MflI RGATCY 1 cut(s) 1324
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 9 cut(s) 166, 349, 364, 505, 659, 926, 1009, 1113, 1229
Mly113I GGCGCC 1 cut(s) 694
MlyI GAGTC 1 cut(s) 467
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 828
MspA1I CMGCKG 3 cut(s) 775, 781, 1061
MspI CCGG 3 cut(s) 281, 517, 624
MspR9I CCNGG 2 cut(s) 10, 431
MunI CAATTG 2 cut(s) 926, 1113
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 2 cut(s) 10, 431
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 9 cut(s) 217, 454, 567, 763, 772, 778, 781, 1049, 1058
NarI GGCGCC 1 cut(s) 694
NlaIII CATG 8 cut(s) 61, 301, 385, 580, 895, 953, 1007, 1096
NlaIV GGNNCC 5 cut(s) 175, 345, 593, 695, 1326
NmuCI GTSAC 2 cut(s) 397, 626
NotI GCGGCCGC 1 cut(s) 776
NspI RCATGY 2 cut(s) 385, 953
PagI TCATGA 2 cut(s) 576, 891
PciI ACATGT 2 cut(s) 381, 949
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 4 cut(s) 268, 895, 955, 983
PflMI CCANNNNNTGG 1 cut(s) 15
PkrI GCNGC 7 cut(s) 447, 563, 774, 777, 780, 783, 1242
PleI GAGTC 1 cut(s) 467
PluTI GGCGCC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 467
PpuMI RGGWCCY 1 cut(s) 174
PscI ACATGT 2 cut(s) 381, 949
PsiI TTATAA 1 cut(s) 1014
Psp5II RGGWCCY 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 8, 429
PspGI CCWGG 2 cut(s) 8, 429
PspN4I GGNNCC 5 cut(s) 175, 345, 593, 695, 1326
PspPI GGNCC 2 cut(s) 174, 343
PspPPI RGGWCCY 1 cut(s) 174
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 1 cut(s) 1324
PvuII CAGCTG 1 cut(s) 1061
RsaI GTAC 9 cut(s) 188, 236, 340, 461, 545, 680, 863, 1033, 1264
RsaNI GTAC 9 cut(s) 187, 235, 339, 460, 544, 679, 862, 1032, 1263
SatI GCNGC 7 cut(s) 446, 562, 773, 776, 779, 782, 1241
Sau96I GGNCC 2 cut(s) 174, 343
ScaI AGTACT 1 cut(s) 1264
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 10, 431
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 5 cut(s) 204, 250, 610, 883, 922
SfcI CTRYAG 1 cut(s) 770
SfoI GGCGCC 1 cut(s) 695
SinI GGWCC 2 cut(s) 174, 343
SmlI CTYRAG 1 cut(s) 1102
SmoI CTYRAG 1 cut(s) 1102
SpeI ACTAGT 1 cut(s) 1028
Sse9I AATT 9 cut(s) 166, 349, 364, 505, 659, 926, 1009, 1113, 1229
SspDI GGCGCC 1 cut(s) 693
SspI AATATT 3 cut(s) 24, 905, 1146
SspMI CTAG 3 cut(s) 1029, 1044, 1330
StyD4I CCNGG 2 cut(s) 8, 429
TaqI TCGA 5 cut(s) 482, 839, 981, 1199, 1227
TasI AATT 9 cut(s) 166, 349, 364, 505, 659, 926, 1009, 1113, 1229
TatI WGTACW 3 cut(s) 186, 678, 1262
TauI GCSGC 2 cut(s) 778, 781
TfiI GAWTC 4 cut(s) 268, 895, 955, 983
TscAI CASTG 1 cut(s) 1215
TseFI GTSAC 2 cut(s) 397, 626
TseI GCWGC 5 cut(s) 445, 561, 772, 781, 1240
Tsp45I GTSAC 2 cut(s) 397, 626
TspDTI ATGAA 7 cut(s) 286, 842, 908, 911, 947, 1044, 1222
TspGWI ACGGA 2 cut(s) 356, 849
TspRI CASTG 1 cut(s) 1215
Van91I CCANNNNNTGG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 174, 343
XapI RAATTY 2 cut(s) 505, 1229
XceI RCATGY 2 cut(s) 385, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 3 cut(s) 1029, 1044, 1330
ZrmI AGTACT 1 cut(s) 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.