Prupe.2G201000_v2.0.a1

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
23783221 .. 23786123
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G201000.3

Sequence Viewer

Length: 1299 bp
ATGGAGTTTATGCAACGAGATCAAAAAGGGTATTCAGATAAGGAAGATCAAGATCAAGAAGATCAAGAGGAAGAGGATATAATTTCCAGTAAGTTCTCTTCTTCATCTCATAATTATAACAACAGCAATTATGGGTCATCACCAAAGTACAAAGCCACTTTTGTTCCTCCTCCTCTTCCTCATCATCATCATCAGTACCAGCAGCAAAAGCCATGGGCTGTTCATAATCATGGGTCTCCAGAAGCCATCAACTTCATGGACCTATCACTAAACCATGAGCAAGCAGCAGCTGATGGAGCCAATAATAACAACAATTGGCCTCCAAACTCTGAAAGAGAGCACATGTTTGACAAAGTTGTCACGCCAAGTGATGTGGGAAAACTCAACCGGCTAGTCATACCCAAGCAACATGCCGAGAGATACTTCCCGCTTGACTCTACAGCCAACGACAAGGGCCTCCTCTTGAACTTCCAAGACCGGACCGGGAAGCCGTGGCGGTTTAGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTGTCGTTTGAGCGCGGGGTTGGGGACTCAGGTAAGGACAGCTTGTACATTGACTGGAGGCGCCGCCCTCCTCCTCCTCCTCCTCCCCCACATCATCACCACCATGGACAGTATGGTAATTGCAATGACAGATGTGGTGGAGGTGAAGGCAGGCTATACTCCCTGCTTCAGCGGCCGCCTCCATCCATGATGTCCATGCCTCTTAGACACCATGACTATTTTCATCCAAGCAACAATGTTCATCATCCGTACCATCATCATCACCACCAGATCATGAACCATCAATATTTGCAGCATCAGATTCATCATCAATTGCAAGTGGAAAGGGATCAAGTGGTTCATCATCATCATCAGTATCCGATGGTGATTGATTCTGTGCCGTTTGTTCAACATGGGAAGATGAGTTCCAGTGGAGCTAGCGCTGGTGCCTCTACCGGTAAGCGGCTTAGGCTATTCGGTGTGAACATGGAGTGTTCTCCAAACATTGAAGAAGATCAAACAGATGAACATCAATACCAGATACTGCCTTCAACAGCAATACCATATAATCATCTTCCTTCCTCTTCGCTTTCTGCTCCTCTTGAATTAAGGCTGCCCAATACTATTGGTGCCAACCAAATACCACTGCCCAATACAGGTGCAGCAGATCAGTACCTCTCAAAGAAAGGGAAATCTACTTCCTTGTCGTTTTATTTGGATTCCTAG

Protein Analysis

433

Amino Acids

49.53

Weight (kDa)

6.75

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AasI GACNNNNNNGTC 1 cut(s) 356
AccB1I GGYRCC 3 cut(s) 654, 1019, 1202
AccB7I CCANNNNNTGG 1 cut(s) 549
AccII CGCG 1 cut(s) 609
AciI CCGC 7 cut(s) 428, 496, 609, 658, 766, 770, 1036
AclWI GGATC 1 cut(s) 930
AcoI YGGCCR 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 746
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 6 cut(s) 149, 197, 506, 641, 845, 1247
AfeI AGCGCT 1 cut(s) 1015
AfiI CCNNNNNNNGG 3 cut(s) 549, 1035, 1229
AflIII ACRYGT 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 1028
AgsI TTSAA 5 cut(s) 466, 983, 1082, 1125, 1178
AhdI GACNNNNNGTC 1 cut(s) 595
AloI GAACNNNNNNTCC 2 cut(s) 982, 1014
AluBI AGCT 5 cut(s) 290, 531, 577, 636, 1010
AluI AGCT 5 cut(s) 290, 531, 577, 636, 1010
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 930
AlwNI CAGNNNCTG 2 cut(s) 290, 1117
Aor51HI AGCGCT 1 cut(s) 1015
AoxI GGCC 3 cut(s) 317, 454, 767
ApeKI GCWGC 7 cut(s) 202, 284, 287, 522, 886, 1186, 1235
AsiGI ACCGGT 1 cut(s) 1028
AspLEI GCGC 3 cut(s) 609, 657, 1016
AspS9I GGNCC 3 cut(s) 259, 454, 480
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 6 cut(s) 132, 599, 683, 749, 848, 970
AsuNHI GCTAGC 1 cut(s) 1010
AvaII GGWCC 2 cut(s) 259, 480
BanI GGYRCC 3 cut(s) 654, 1019, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 82, 114
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 7 cut(s) 214, 296, 299, 534, 898, 1173, 1247
BccI CCATC 6 cut(s) 254, 287, 784, 855, 882, 949
BceAI ACGGC 3 cut(s) 475, 540, 958
BciVI GTATCC 1 cut(s) 960
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 3 cut(s) 392, 1011, 1297
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 2 cut(s) 658, 1017
BfuI GTATCC 1 cut(s) 960
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 259, 480
BmeRI GACNNNNNGTC 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 259, 454, 480
BmiI GGNNCC 5 cut(s) 298, 554, 656, 1021, 1204
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 571, 898
BmtI GCTAGC 1 cut(s) 1014
BpmI CTGGAG 2 cut(s) 222, 670
Bpu10I CCTNAGC 1 cut(s) 1040
BpuMI CCSGG 1 cut(s) 484
BsaBI GATNNNNATC 2 cut(s) 51, 1101
BsaHI GRCGYC 1 cut(s) 655
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 212, 491, 697
BsaWI WCCGGW 2 cut(s) 477, 1028
Bsc4I CCNNNNNNNGG 3 cut(s) 549, 1035, 1229
Bse118I RCCGGY 3 cut(s) 387, 584, 1028
Bse1I ACTGG 4 cut(s) 87, 518, 653, 1002
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 2 cut(s) 51, 1101
BseDI CCNNGG 3 cut(s) 212, 491, 697
BseGI GGATG 4 cut(s) 586, 776, 817, 838
BseJI GATNNNNATC 2 cut(s) 51, 1101
BseLI CCNNNNNNNGG 3 cut(s) 549, 1035, 1229
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 4 cut(s) 87, 518, 653, 1002
BseRI GAGGAG 9 cut(s) 159, 162, 449, 654, 657, 660, 663, 666, 1161
BseX3I CGGCCG 1 cut(s) 767
BseXI GCAGC 7 cut(s) 214, 296, 299, 534, 898, 1173, 1247
BsgI GTGCAG 1 cut(s) 1254
Bsh1236I CGCG 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 770
BshFI GGCC 3 cut(s) 319, 456, 769
BshNI GGYRCC 3 cut(s) 654, 1019, 1202
BshTI ACCGGT 1 cut(s) 1028
BsiEI CGRYCG 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 5 cut(s) 388, 478, 483, 585, 1029
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 3 cut(s) 549, 1035, 1229
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 3 cut(s) 319, 456, 769
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
Bsp19I CCATGG 2 cut(s) 212, 697
BspACI CCGC 7 cut(s) 428, 496, 609, 658, 766, 770, 1036
BspANI GGCC 3 cut(s) 319, 456, 769
BspCNI CTCAG 1 cut(s) 635
BspFNI CGCG 1 cut(s) 609
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 5 cut(s) 298, 554, 656, 1021, 1204
BspOI GCTAGC 1 cut(s) 1014
BspPI GGATC 1 cut(s) 930
BspT107I GGYRCC 3 cut(s) 654, 1019, 1202
BspTNI GGTCTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 724
BsrFI RCCGGY 3 cut(s) 387, 584, 1028
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 4 cut(s) 87, 518, 653, 1002
BssAI RCCGGY 3 cut(s) 387, 584, 1028
BssECI CCNNGG 3 cut(s) 212, 491, 697
BssMI GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 2 cut(s) 212, 697
Bst4CI ACNGT 1 cut(s) 705
Bst6I CTCTTC 4 cut(s) 66, 103, 180, 1162
BstACI GRCGYC 1 cut(s) 655
BstAUI TGTACA 1 cut(s) 639
BstC8I GCNNGC 3 cut(s) 282, 746, 1012
BstDEI CTNAG 3 cut(s) 622, 797, 1040
BstDSI CCRYGG 3 cut(s) 212, 491, 697
BstF5I GGATG 4 cut(s) 586, 776, 817, 838
BstFNI CGCG 1 cut(s) 609
BstH2I RGCGCY 2 cut(s) 658, 1017
BstHHI GCGC 3 cut(s) 609, 657, 1016
BstKTI GATC 8 cut(s) 22, 49, 55, 64, 867, 925, 1090, 1243
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
BstMCI CGRYCG 1 cut(s) 770
BstMWI GCNNNNNNNGC 5 cut(s) 208, 296, 528, 766, 1042
BstNSI RCATGY 2 cut(s) 346, 413
BstSCI CCNGG 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 7 cut(s) 214, 296, 299, 534, 898, 1173, 1247
BstZI CGGCCG 1 cut(s) 767
BsuI GTATCC 1 cut(s) 960
BsuRI GGCC 3 cut(s) 319, 456, 769
BtgI CCRYGG 3 cut(s) 212, 491, 697
BtsCI GGATG 4 cut(s) 586, 776, 817, 838
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 2 cut(s) 1009, 1217
Cac8I GCNNGC 3 cut(s) 282, 746, 1012
CaiI CAGNNNCTG 2 cut(s) 290, 1117
CciI TCATGA 1 cut(s) 867
CciNI GCGGCCGC 1 cut(s) 767
CfoI GCGC 3 cut(s) 609, 657, 1016
Cfr10I RCCGGY 3 cut(s) 387, 584, 1028
Cfr13I GGNCC 3 cut(s) 259, 454, 480
CpoI CGGWCCG 1 cut(s) 480
Csp6I GTAC 6 cut(s) 148, 196, 505, 640, 844, 1246
CspAI ACCGGT 1 cut(s) 1028
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CspI CGGWCCG 1 cut(s) 480
CviQI GTAC 6 cut(s) 148, 196, 505, 640, 844, 1246
DdeI CTNAG 3 cut(s) 622, 797, 1040
DinI GGCGCC 1 cut(s) 656
DpnI GATC 8 cut(s) 21, 48, 54, 63, 866, 924, 1089, 1242
DpnII GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
DrdI GACNNNNNNGTC 1 cut(s) 356
DriI GACNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 767
EagI CGGCCG 1 cut(s) 767
Eam1104I CTCTTC 4 cut(s) 66, 103, 180, 1162
Eam1105I GACNNNNNGTC 1 cut(s) 595
EarI CTCTTC 4 cut(s) 66, 103, 180, 1162
EclXI CGGCCG 1 cut(s) 767
Eco130I CCWWGG 2 cut(s) 212, 697
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 259, 480
Eco47III AGCGCT 1 cut(s) 1015
Eco52I CGGCCG 1 cut(s) 767
Eco57I CTGAAG 1 cut(s) 746
EcoO109I RGGNCCY 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 212, 697
EgeI GGCGCC 1 cut(s) 656
EheI GGCGCC 1 cut(s) 656
ErhI CCWWGG 2 cut(s) 212, 697
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 1 cut(s) 632
FauI CCCGC 2 cut(s) 435, 602
FokI GGATG 4 cut(s) 593, 763, 804, 825
FspBI CTAG 3 cut(s) 392, 1011, 1297
GlaI GCGC 3 cut(s) 608, 656, 1015
GsuI CTGGAG 2 cut(s) 222, 670
HaeII RGCGCY 2 cut(s) 658, 1017
HaeIII GGCC 3 cut(s) 319, 456, 769
HapII CCGG 5 cut(s) 388, 478, 483, 585, 1029
HhaI GCGC 3 cut(s) 609, 657, 1016
Hin1I GRCGYC 1 cut(s) 655
Hin6I GCGC 3 cut(s) 607, 655, 1014
HinP1I GCGC 3 cut(s) 607, 655, 1014
HinfI GANTC 5 cut(s) 434, 620, 895, 965, 1292
HpaII CCGG 5 cut(s) 388, 478, 483, 585, 1029
HphI GGTGA 6 cut(s) 132, 599, 683, 749, 848, 970
Hpy166II GTNNAC 1 cut(s) 1057
Hpy188I TCNGA 4 cut(s) 37, 331, 894, 954
Hpy188III TCNNGA 7 cut(s) 50, 56, 65, 239, 463, 868, 1175
Hpy8I GTNNAC 1 cut(s) 1057
HpyAV CCTTC 4 cut(s) 559, 734, 1131, 1161
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4V TGCA 5 cut(s) 13, 717, 886, 910, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 296, 528, 766, 1042
HpyF3I CTNAG 3 cut(s) 622, 797, 1040
Hsp92I GRCGYC 1 cut(s) 655
HspAI GCGC 3 cut(s) 607, 655, 1014
KasI GGCGCC 1 cut(s) 654
Kzo9I GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
LmnI GCTCC 4 cut(s) 296, 552, 1007, 1174
Lsp1109I GCAGC 7 cut(s) 214, 296, 299, 534, 898, 1173, 1247
LweI GCATC 2 cut(s) 571, 898
MaeI CTAG 3 cut(s) 392, 1011, 1297
MaeIII GTNAC 2 cut(s) 358, 587
MalI GATC 8 cut(s) 21, 48, 54, 63, 866, 924, 1089, 1242
MboI GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
MfeI CAATTG 2 cut(s) 313, 905
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 7 cut(s) 81, 112, 127, 313, 712, 905, 1178
Mly113I GGCGCC 1 cut(s) 655
MlyI GAGTC 2 cut(s) 428, 614
MseI TTAA 1 cut(s) 1181
MslI CAYNNNNRTG 2 cut(s) 228, 696
MspA1I CMGCKG 2 cut(s) 290, 766
MspI CCGG 5 cut(s) 388, 478, 483, 585, 1029
MspR9I CCNGG 1 cut(s) 484
MunI CAATTG 2 cut(s) 313, 905
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 5 cut(s) 208, 296, 528, 766, 1042
NarI GGCGCC 1 cut(s) 655
NciI CCSGG 1 cut(s) 484
NcoI CCATGG 2 cut(s) 212, 697
NdeII GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
NheI GCTAGC 1 cut(s) 1010
NlaIV GGNNCC 5 cut(s) 298, 554, 656, 1021, 1204
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 2 cut(s) 358, 587
NotI GCGGCCGC 1 cut(s) 767
NspI RCATGY 2 cut(s) 346, 413
PagI TCATGA 1 cut(s) 867
PciI ACATGT 1 cut(s) 342
PfeI GAWTC 3 cut(s) 895, 965, 1292
PflMI CCANNNNNTGG 1 cut(s) 549
PinAI ACCGGT 1 cut(s) 1028
PleI GAGTC 2 cut(s) 428, 614
PluTI GGCGCC 1 cut(s) 658
PpsI GAGTC 2 cut(s) 428, 614
PscI ACATGT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 117
PspN4I GGNNCC 5 cut(s) 298, 554, 656, 1021, 1204
PspPI GGNCC 3 cut(s) 259, 454, 480
PstNI CAGNNNCTG 2 cut(s) 290, 1117
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 6 cut(s) 149, 197, 506, 641, 845, 1247
RsaNI GTAC 6 cut(s) 148, 196, 505, 640, 844, 1246
RseI CAYNNNNRTG 2 cut(s) 228, 696
Rsr2I CGGWCCG 1 cut(s) 480
RsrII CGGWCCG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 1181
Sau3AI GATC 8 cut(s) 19, 46, 52, 61, 864, 922, 1087, 1240
Sau96I GGNCC 3 cut(s) 259, 454, 480
SchI GAGTC 2 cut(s) 428, 614
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 571, 898
SfcI CTRYAG 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 656
SinI GGWCC 2 cut(s) 259, 480
SmiMI CAYNNNNRTG 2 cut(s) 228, 696
Sse9I AATT 7 cut(s) 81, 112, 127, 313, 712, 905, 1178
SsiI CCGC 7 cut(s) 428, 496, 609, 658, 766, 770, 1036
SspDI GGCGCC 1 cut(s) 654
SspI AATATT 1 cut(s) 881
SspMI CTAG 3 cut(s) 392, 1011, 1297
StyD4I CCNGG 1 cut(s) 482
StyI CCWWGG 2 cut(s) 212, 697
TaaI ACNGT 1 cut(s) 705
TasI AATT 7 cut(s) 81, 112, 127, 313, 712, 905, 1178
TatI WGTACW 2 cut(s) 147, 639
TauI GCSGC 4 cut(s) 660, 769, 772, 1039
TfiI GAWTC 3 cut(s) 895, 965, 1292
Tru1I TTAA 1 cut(s) 1181
Tru9I TTAA 1 cut(s) 1181
TscAI CASTG 2 cut(s) 1009, 1224
TseFI GTSAC 2 cut(s) 358, 587
TseI GCWGC 7 cut(s) 202, 284, 287, 522, 886, 1186, 1235
Tsp45I GTSAC 2 cut(s) 358, 587
TspDTI ATGAA 9 cut(s) 93, 212, 244, 806, 824, 884, 887, 923, 1113
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 2 cut(s) 1009, 1224
Van91I CCANNNNNTGG 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 259, 480
XceI RCATGY 2 cut(s) 346, 413
XcmI CCANNNNNNNNNTGG 2 cut(s) 253, 704
XspI CTAG 3 cut(s) 392, 1011, 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.