pycom07g15750

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
18309225 .. 18310556
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15750.1

Sequence Viewer

Length: 1332 bp
ATGGAATTTATGCAAAGAGATCAGAAGGGGTATTCTGACAAAGAAGACCAAGATCAAGATCTAGAACAAGAAGATCAAGAGGAAGAGGAGGATATAATCACCACCAGTAAGTTTTCTTCATCATCATCTCATACTTCAACTAACAGCAATTATGGGTCCTCACCAAAGTACAAAGCCATCCTTTTTCCTCCTCCTCCTGACCACCAGCAGCAGTACGGCCAGCAAAAGCCGCGGCTTAATATTCAGAATCACGGCTCTCCGGAAGCCATAAGCTTCATGGACTTATCACTAAACAAAGATATTCAGGCTGCTGAGGGTGGTACTGACGAAAATTACTGGCCTGCGAGCTGCGAAACGGAGCACTTGTTTGCGAAGGTTGTGACGCCGAGCGATGTAGGGAAGCTCAACCGCCTAGTTATTCCGAAGCAGCATGCCGAGCGGTACTTCCCGCTGGACTCATCATCAAACGACAAGGGATTGTTTTTGAATTTTCAAGACCGGATGGGGAAGCCGTGGCGATTTAGGTACTCTTATTGGAATAGCAGCCAGAGCTATGTCATAACGAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCCGGCGACATTGTGTCGTTTGAGCGCGGGGTTGGGGAATCCGGTAAGGACAGGTTGTTTATTGACTGGAGGCGGCGCCCTCCCCCTCCTCCTCCACCTCAGCTACATCATCATAACCATTACGCTGGAGGCAGGTTTTACTCGCTGCTGCAGAGGCCACTGCCTTCGTCTGTGATATCGTCTATGCCTCTTAGACACCACGAACATTTTCTTCATTCGAACAACAACGTTCATCATCCGTACCACCACCACCACCATGACCATCAGATCATGAATCAACAATATTTACCGCATCAGATTCATCAGTTGCAAGGTGGAAGAGGTCATCACGTGATTCATCATCAATATCCAAGGGTTATCGATTCAGTTCCGCTTTATCAGCATGGTAACTATAGGAGTTCTACTACTAGTACTAGTAGTGAAAGTGCTAGTGTTGCTTCAGCTGGTAAAAAGCTTAGGCTTTTTGGTGTGAACATGGAATGCTCAAGTAGTCCAACCGAAAAGGAGGATCATCAAGAATGTCAGATATTGTCTTCAACAGCAATACCCTACCATCATCATCATCATCATCATAATCTTCCATCTTCGACGTCTTCGCTGGCTTCTGCTCCGCTTCAATTCATGAGGCTGCCCAATACAAGTAGTAGTAGTACTCCACCAGACCATCACTTCCTCTCAAACAAAGGGAAATCTACAACTACTTCGTCGTCGTTTTATTTGAATCCCTAG

Protein Analysis

444

Amino Acids

50.68

Weight (kDa)

6.98

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 123 - 227 2.2e-25 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1196
Acc36I ACCTGC 1 cut(s) 726
AccB1I GGYRCC 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 439
AccII CGCG 2 cut(s) 232, 630
AccIII TCCGGA 1 cut(s) 259
AclI AACGTT 1 cut(s) 831
AclWI GGATC 1 cut(s) 1119
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 5, 487
AcuI CTGAAG 1 cut(s) 1026
AcvI CACGTG 1 cut(s) 934
AcyI GRCGYC 3 cut(s) 383, 679, 1193
AfaI GTAC 8 cut(s) 170, 215, 322, 443, 527, 845, 1015, 1255
AgsI TTSAA 6 cut(s) 138, 487, 494, 1140, 1220, 1324
AhdI GACNNNNNGTC 1 cut(s) 616
AhlI ACTAGT 2 cut(s) 1010, 1016
AluBI AGCT 8 cut(s) 273, 348, 403, 552, 598, 706, 1046, 1057
AluI AGCT 8 cut(s) 273, 348, 403, 552, 598, 706, 1046, 1057
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 1 cut(s) 1119
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 3 cut(s) 217, 338, 758
ApeKI GCWGC 8 cut(s) 208, 308, 348, 427, 543, 748, 751, 1231
ApoI RAATTY 2 cut(s) 5, 487
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 2 cut(s) 630, 681
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 91, 153
AsuII TTCGAA 1 cut(s) 821
AvaII GGWCC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 678
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbrPI CACGTG 1 cut(s) 934
BbsI GAAGAC 3 cut(s) 51, 1128, 1188
Bbv12I GWGCWC 1 cut(s) 363
BbvCI CCTCAGC 2 cut(s) 312, 702
BbvI GCAGC 8 cut(s) 220, 295, 335, 439, 555, 735, 738, 1218
BccI CCATC 6 cut(s) 185, 496, 873, 1164, 1192, 1275
BceAI ACGGC 4 cut(s) 232, 268, 496, 561
BcuI ACTAGT 2 cut(s) 1010, 1016
BfaI CTAG 6 cut(s) 62, 413, 1011, 1017, 1032, 1330
BfmI CTRYAG 2 cut(s) 752, 994
BfoI RGCGCY 1 cut(s) 682
BfuAI ACCTGC 1 cut(s) 726
BglII AGATCT 1 cut(s) 58
BmcAI AGTACT 2 cut(s) 1015, 1255
Bme18I GGWCC 1 cut(s) 156
BmeRI GACNNNNNGTC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 3 cut(s) 157, 575, 680
BmsI GCATC 2 cut(s) 592, 904
BpiI GAAGAC 3 cut(s) 51, 1128, 1188
BpmI CTGGAG 2 cut(s) 691, 750
Bpu10I CCTNAGC 3 cut(s) 312, 702, 1058
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 1072
Bsa29I ATCGAT 1 cut(s) 963
BsaAI YACGTR 1 cut(s) 934
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 3 cut(s) 383, 679, 1193
BsaJI CCNNGG 3 cut(s) 230, 512, 953
BsaWI WCCGGW 3 cut(s) 259, 498, 644
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 3 cut(s) 105, 341, 674
Bse8I GATNNNNATC 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 963
BseDI CCNNGG 3 cut(s) 230, 512, 953
BseGI GGATG 4 cut(s) 177, 507, 607, 838
BseJI GATNNNNATC 1 cut(s) 57
BseMII CTCAG 2 cut(s) 303, 716
BseNI ACTGG 3 cut(s) 105, 341, 674
BseRI GAGGAG 5 cut(s) 101, 180, 183, 681, 684
BseXI GCAGC 8 cut(s) 220, 295, 335, 439, 555, 735, 738, 1218
Bsh1236I CGCG 2 cut(s) 232, 630
BshFI GGCC 3 cut(s) 219, 340, 760
BshNI GGYRCC 1 cut(s) 678
BshVI ATCGAT 1 cut(s) 963
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 4 cut(s) 260, 499, 606, 645
BsmI GAATGC 1 cut(s) 1088
BsnI GGCC 3 cut(s) 219, 340, 760
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
BspANI GGCC 3 cut(s) 219, 340, 760
BspCNI CTCAG 2 cut(s) 304, 715
BspDI ATCGAT 1 cut(s) 963
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 232, 630
BspHI TCATGA 2 cut(s) 873, 1224
BspLI GGNNCC 3 cut(s) 157, 575, 680
BspMAI CTGCAG 1 cut(s) 756
BspMI ACCTGC 1 cut(s) 726
BspPI GGATC 1 cut(s) 1119
BspT104I TTCGAA 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 678
BsrBI CCGCTC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 3 cut(s) 105, 341, 674
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 230, 512, 953
BssMI GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
BssNI GRCGYC 3 cut(s) 383, 679, 1193
BssT1I CCWWGG 1 cut(s) 953
Bst6I CTCTTC 2 cut(s) 78, 916
BstACI GRCGYC 3 cut(s) 383, 679, 1193
BstBAI YACGTR 1 cut(s) 934
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 6 cut(s) 221, 342, 346, 432, 607, 1203
BstDEI CTNAG 4 cut(s) 312, 702, 794, 1058
BstDSI CCRYGG 2 cut(s) 230, 512
BstF5I GGATG 4 cut(s) 177, 507, 607, 838
BstFNI CGCG 2 cut(s) 232, 630
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 2 cut(s) 630, 681
BstKTI GATC 6 cut(s) 22, 55, 61, 76, 873, 1114
BstMBI GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
BstMWI GCNNNNNNNGC 6 cut(s) 229, 436, 549, 757, 982, 1037
BstNSI RCATGY 1 cut(s) 434
BstSFI CTRYAG 2 cut(s) 752, 994
BstUI CGCG 2 cut(s) 232, 630
BstV1I GCAGC 8 cut(s) 220, 295, 335, 439, 555, 735, 738, 1218
BstV2I GAAGAC 3 cut(s) 51, 1128, 1188
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 963
BsuRI GGCC 3 cut(s) 219, 340, 760
BsuTUI ATCGAT 1 cut(s) 963
BtgI CCRYGG 2 cut(s) 230, 512
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 4 cut(s) 177, 507, 607, 838
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 1 cut(s) 761
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 6 cut(s) 221, 342, 346, 432, 607, 1203
CciI TCATGA 2 cut(s) 873, 1224
CfoI GCGC 2 cut(s) 630, 681
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 156
Cfr42I CCGCGG 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 963
CseI GACGC 1 cut(s) 391
Csp6I GTAC 8 cut(s) 169, 214, 321, 442, 526, 844, 1014, 1254
CviAII CATG 7 cut(s) 277, 431, 860, 874, 986, 1078, 1225
CviQI GTAC 8 cut(s) 169, 214, 321, 442, 526, 844, 1014, 1254
DdeI CTNAG 4 cut(s) 312, 702, 794, 1058
DinI GGCGCC 1 cut(s) 680
DpnI GATC 6 cut(s) 21, 54, 60, 75, 872, 1113
DpnII GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
DriI GACNNNNNGTC 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 78, 916
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 2 cut(s) 78, 916
Eco130I CCWWGG 1 cut(s) 953
Eco32I GATATC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 1026
Eco72I CACGTG 1 cut(s) 934
EcoO109I RGGNCCY 1 cut(s) 156
EcoRV GATATC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 953
EgeI GGCGCC 1 cut(s) 680
EheI GGCGCC 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 953
FaeI CATG 7 cut(s) 280, 434, 863, 877, 989, 1081, 1228
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 7 cut(s) 276, 430, 859, 873, 985, 1077, 1224
FauI CCCGC 2 cut(s) 456, 623
FokI GGATG 4 cut(s) 164, 514, 614, 825
FspBI CTAG 6 cut(s) 62, 413, 1011, 1017, 1032, 1330
GlaI GCGC 2 cut(s) 629, 680
GsuI CTGGAG 2 cut(s) 691, 750
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 3 cut(s) 219, 340, 760
HapII CCGG 4 cut(s) 260, 499, 606, 645
HgaI GACGC 1 cut(s) 391
HhaI GCGC 2 cut(s) 630, 681
Hin1I GRCGYC 3 cut(s) 383, 679, 1193
Hin1II CATG 7 cut(s) 280, 434, 863, 877, 989, 1081, 1228
Hin6I GCGC 2 cut(s) 628, 679
HinP1I GCGC 2 cut(s) 628, 679
HindIII AAGCTT 2 cut(s) 271, 1055
HinfI GANTC 8 cut(s) 247, 455, 641, 877, 901, 937, 965, 1324
HpaII CCGG 4 cut(s) 260, 499, 606, 645
HphI GGTGA 2 cut(s) 91, 153
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 7 cut(s) 24, 37, 246, 423, 870, 900, 1128
Hpy188III TCNNGA 9 cut(s) 56, 62, 77, 197, 260, 494, 874, 1118, 1225
Hpy8I GTNNAC 1 cut(s) 1075
Hpy99I CGWCG 3 cut(s) 1195, 1312, 1315
HpyAV CCTTC 4 cut(s) 19, 367, 580, 777
HpyCH4IV ACGT 3 cut(s) 831, 933, 1193
HpyCH4V TGCA 3 cut(s) 13, 754, 913
HpyF10VI GCNNNNNNNGC 6 cut(s) 229, 436, 549, 757, 982, 1037
HpyF3I CTNAG 4 cut(s) 312, 702, 794, 1058
HpySE526I ACGT 3 cut(s) 831, 933, 1193
Hsp92I GRCGYC 3 cut(s) 383, 679, 1193
Hsp92II CATG 7 cut(s) 280, 434, 863, 877, 989, 1081, 1228
HspAI GCGC 2 cut(s) 628, 679
KasI GGCGCC 1 cut(s) 678
Kpn2I TCCGGA 1 cut(s) 259
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
KspI CCGCGG 1 cut(s) 233
Kzo9I GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
LmnI GCTCC 3 cut(s) 358, 573, 1216
Lsp1109I GCAGC 8 cut(s) 220, 295, 335, 439, 555, 735, 738, 1218
LweI GCATC 2 cut(s) 592, 904
MaeI CTAG 6 cut(s) 62, 413, 1011, 1017, 1032, 1330
MaeII ACGT 3 cut(s) 831, 933, 1193
MaeIII GTNAC 2 cut(s) 379, 989
MalI GATC 6 cut(s) 21, 54, 60, 75, 872, 1113
MbiI CCGCTC 1 cut(s) 439
MboI GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 5 cut(s) 5, 148, 331, 487, 1220
Mly113I GGCGCC 1 cut(s) 679
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 1121
MroI TCCGGA 1 cut(s) 259
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 858
MspA1I CMGCKG 3 cut(s) 232, 451, 1046
MspI CCGG 4 cut(s) 260, 499, 606, 645
Mva1269I GAATGC 1 cut(s) 1088
MvnI CGCG 2 cut(s) 232, 630
MwoI GCNNNNNNNGC 6 cut(s) 229, 436, 549, 757, 982, 1037
NaeI GCCGGC 1 cut(s) 607
NarI GGCGCC 1 cut(s) 679
NdeII GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 7 cut(s) 280, 434, 863, 877, 989, 1081, 1228
NlaIV GGNNCC 3 cut(s) 157, 575, 680
NmeAIII GCCGAG 2 cut(s) 411, 460
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 821
PaeI GCATGC 1 cut(s) 434
PagI TCATGA 2 cut(s) 873, 1224
PctI GAATGC 1 cut(s) 1088
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 7 cut(s) 247, 641, 877, 901, 937, 965, 1324
PleI GAGTC 1 cut(s) 449
PluTI GGCGCC 1 cut(s) 682
PmaCI CACGTG 1 cut(s) 934
PmlI CACGTG 1 cut(s) 934
PpsI GAGTC 1 cut(s) 449
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 156
PspCI CACGTG 1 cut(s) 934
PspN4I GGNNCC 3 cut(s) 157, 575, 680
PspPI GGNCC 1 cut(s) 156
PspPPI RGGWCCY 1 cut(s) 156
PstI CTGCAG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 8 cut(s) 170, 215, 322, 443, 527, 845, 1015, 1255
RsaNI GTAC 8 cut(s) 169, 214, 321, 442, 526, 844, 1014, 1254
RseI CAYNNNNRTG 1 cut(s) 858
SacII CCGCGG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 6 cut(s) 19, 52, 58, 73, 870, 1111
Sau96I GGNCC 1 cut(s) 156
ScaI AGTACT 2 cut(s) 1015, 1255
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 592, 904
SfcI CTRYAG 2 cut(s) 752, 994
SfoI GGCGCC 1 cut(s) 680
Sfr303I CCGCGG 1 cut(s) 233
SfuI TTCGAA 1 cut(s) 821
SgrBI CCGCGG 1 cut(s) 233
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 1 cut(s) 1087
SmoI CTYRAG 1 cut(s) 1087
SpeI ACTAGT 2 cut(s) 1010, 1016
SphI GCATGC 1 cut(s) 434
Sse9I AATT 5 cut(s) 5, 148, 331, 487, 1220
SspDI GGCGCC 1 cut(s) 678
SspI AATATT 2 cut(s) 241, 887
SspMI CTAG 6 cut(s) 62, 413, 1011, 1017, 1032, 1330
StyI CCWWGG 1 cut(s) 953
TaiI ACGT 3 cut(s) 834, 936, 1196
TaqI TCGA 3 cut(s) 821, 963, 1190
TasI AATT 5 cut(s) 5, 148, 331, 487, 1220
TatI WGTACW 3 cut(s) 168, 1013, 1253
TauI GCSGC 3 cut(s) 232, 235, 679
TfiI GAWTC 7 cut(s) 247, 641, 877, 901, 937, 965, 1324
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 8 cut(s) 208, 308, 348, 427, 543, 748, 751, 1231
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 8 cut(s) 108, 265, 806, 824, 890, 893, 929, 1213
TspGWI ACGGA 2 cut(s) 371, 831
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 5, 487
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 6 cut(s) 62, 413, 1011, 1017, 1032, 1330
ZraI GACGTC 1 cut(s) 1194
ZrmI AGTACT 2 cut(s) 1015, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.