Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Forward (+)

53160364 .. 53161491

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGATCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCCCAAACCCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGACAACAACAACAACGATTGGCCCCCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACTCCAAGTGATGTGGGCAAGCTCAACCGTCTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGTAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCACCTCCTCTACCGCCTAATCAAACCTCTCTCTGGGGAGGCGGAGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCACTGCGGCATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAACCCCTACCAATTGCAGCAGCAGCAGCAGCAACAACAACAACACTACCACCACAGAGGAATTAGTCCCGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGGTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGGTGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAACATCATCATCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

375

Amino Acids

43.66

Weight (kDa)

7.0

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	82 - 183	7.4e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	447
AccBSI	CCGCTC	1 cut(s)	505
AclWI	GGATC	4 cut(s)	60, 289, 1077, 1115
AcoI	YGGCCR	1 cut(s)	1056
AfaI	GTAC	6 cut(s)	8, 101, 320, 404, 533, 899
AfiI	CCNNNNNNNGG	4 cut(s)	447, 504, 588, 1058
AflIII	ACRYGT	1 cut(s)	240
AhdI	GACNNNNNGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	280, 429, 475, 1075
AluI	AGCT	4 cut(s)	280, 429, 475, 1075
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	4 cut(s)	60, 289, 1077, 1115
AoxI	GGCC	3 cut(s)	215, 623, 1056
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	3 cut(s)	216, 373, 814
AsuHPI	GGTGA	8 cut(s)	497, 671, 686, 805, 818, 824, 929, 983
AvaII	GGWCC	2 cut(s)	373, 814
BamHI	GGATCC	1 cut(s)	1120
BauI	CACGAG	1 cut(s)	656
BbsI	GAAGAC	2 cut(s)	78, 936
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	3 cut(s)	690, 699, 837
BceAI	ACGGC	2 cut(s)	373, 773
BciT130I	CCWGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	617
BglI	GCCNNNNNGGC	2 cut(s)	649, 1055
BmcAI	AGTACT	3 cut(s)	8, 101, 320
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	373, 814
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	216, 373, 814
BmiI	GGNNCC	3 cut(s)	218, 452, 1122
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	469, 661
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	2 cut(s)	78, 936
BpmI	CTGGAG	2 cut(s)	469, 1043
Bpu10I	CCTNAGC	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	389, 789, 835
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	4 cut(s)	447, 504, 588, 1058
Bse118I	RCCGGY	2 cut(s)	453, 1058
Bse1I	ACTGG	6 cut(s)	385, 416, 545, 697, 816, 1059
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	389, 789, 835
BseGI	GGATG	2 cut(s)	134, 682
BseLI	CCNNNNNNNGG	4 cut(s)	447, 504, 588, 1058
BseNI	ACTGG	6 cut(s)	385, 416, 545, 697, 816, 1059
BseRI	GAGGAG	2 cut(s)	130, 552
BshFI	GGCC	3 cut(s)	217, 625, 1058
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	376, 454, 1059
BslFI	GGGAC	2 cut(s)	530, 768
BslI	CCNNNNNNNGG	4 cut(s)	447, 504, 588, 1058
BsmFI	GGGAC	2 cut(s)	530, 768
BsnI	GGCC	3 cut(s)	217, 625, 1058
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	5 cut(s)	22, 52, 294, 1069, 1120
Bsp19I	CCATGG	1 cut(s)	835
BspANI	GGCC	3 cut(s)	217, 625, 1058
BspLI	GGNNCC	3 cut(s)	218, 452, 1122
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	4 cut(s)	60, 289, 1077, 1115
BsrBI	CCGCTC	1 cut(s)	505
BsrFI	RCCGGY	2 cut(s)	453, 1058
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	6 cut(s)	385, 416, 545, 697, 816, 1059
BssAI	RCCGGY	2 cut(s)	453, 1058
BssECI	CCNNGG	3 cut(s)	389, 789, 835
BssMI	GATC	5 cut(s)	22, 52, 294, 1069, 1120
BssSI	CACGAG	1 cut(s)	656
BssT1I	CCWWGG	1 cut(s)	835
Bst2BI	CACGAG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	6 cut(s)	95, 227, 287, 419, 902, 952
Bst6I	CTCTTC	2 cut(s)	42, 54
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	182, 872
BstDSI	CCRYGG	3 cut(s)	389, 789, 835
BstF5I	GGATG	2 cut(s)	134, 682
BstKTI	GATC	5 cut(s)	25, 55, 297, 1072, 1123
BstMBI	GATC	5 cut(s)	22, 52, 294, 1069, 1120
BstMWI	GCNNNNNNNGC	9 cut(s)	622, 649, 658, 739, 742, 745, 874, 1055, 1064
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	244, 311
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	617
BstV2I	GAAGAC	2 cut(s)	78, 936
BstX2I	RGATCY	1 cut(s)	1120
BstXI	CCANNNNNNTGG	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	1120
BsuRI	GGCC	3 cut(s)	217, 625, 1058
BtgI	CCRYGG	3 cut(s)	389, 789, 835
BtsCI	GGATG	2 cut(s)	134, 682
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	6 cut(s)	232, 644, 809, 810, 957, 1052
Cac8I	GCNNGC	1 cut(s)	278
Cfr10I	RCCGGY	2 cut(s)	453, 1058
Cfr13I	GGNCC	3 cut(s)	216, 373, 814
Csp6I	GTAC	6 cut(s)	7, 100, 319, 403, 532, 898
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	5 cut(s)	169, 241, 308, 836, 892
CviQI	GTAC	6 cut(s)	7, 100, 319, 403, 532, 898
DdeI	CTNAG	2 cut(s)	182, 872
DpnI	GATC	5 cut(s)	24, 54, 296, 1071, 1122
DpnII	GATC	5 cut(s)	22, 52, 294, 1069, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	524
DriI	GACNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	1056
Eam1104I	CTCTTC	2 cut(s)	42, 54
Eam1105I	GACNNNNNGTC	1 cut(s)	493
EarI	CTCTTC	2 cut(s)	42, 54
EciI	GGCGGA	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	373, 814
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	835
ErhI	CCWWGG	1 cut(s)	835
FaeI	CATG	5 cut(s)	172, 244, 311, 839, 895
FaqI	GGGAC	2 cut(s)	530, 768
FatI	CATG	5 cut(s)	168, 240, 307, 835, 891
FauI	CCCGC	1 cut(s)	793
FokI	GGATG	2 cut(s)	121, 669
FspBI	CTAG	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	469, 1043
HaeIII	GGCC	3 cut(s)	217, 625, 1058
HapII	CCGG	3 cut(s)	376, 454, 1059
Hin1II	CATG	5 cut(s)	172, 244, 311, 839, 895
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	332, 518, 800, 850
HpaII	CCGG	3 cut(s)	376, 454, 1059
HphI	GGTGA	8 cut(s)	497, 671, 686, 805, 818, 824, 929, 983
Hpy166II	GTNNAC	3 cut(s)	339, 889, 920
Hpy188I	TCNGA	4 cut(s)	40, 714, 936, 1084
Hpy188III	TCNNGA	3 cut(s)	56, 656, 1022
Hpy8I	GTNNAC	3 cut(s)	339, 889, 920
HpyAV	CCTTC	6 cut(s)	120, 343, 508, 908, 1004, 1008
HpyCH4III	ACNGT	6 cut(s)	95, 227, 287, 419, 902, 952
HpyCH4V	TGCA	4 cut(s)	16, 619, 733, 910
HpyF10VI	GCNNNNNNNGC	9 cut(s)	622, 649, 658, 739, 742, 745, 874, 1055, 1064
HpyF3I	CTNAG	2 cut(s)	182, 872
Hsp92II	CATG	5 cut(s)	172, 244, 311, 839, 895
Kzo9I	GATC	5 cut(s)	22, 52, 294, 1069, 1120
LmnI	GCTCC	1 cut(s)	450
LweI	GCATC	2 cut(s)	469, 661
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	3 cut(s)	177, 256, 485
MalI	GATC	5 cut(s)	24, 54, 296, 1071, 1122
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	5 cut(s)	22, 52, 294, 1069, 1120
MboII	GAAGA	8 cut(s)	59, 71, 77, 80, 83, 936, 993, 996
MfeI	CAATTG	1 cut(s)	728
MflI	RGATCY	1 cut(s)	1120
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	118, 728, 777, 1039
MlyI	GAGTC	2 cut(s)	512, 859
MmeI	TCCRAC	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	3 cut(s)	90, 362, 1028
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	3 cut(s)	622, 1067, 1075
MspI	CCGG	3 cut(s)	376, 454, 1059
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	728
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	9 cut(s)	622, 649, 658, 739, 742, 745, 874, 1055, 1064
NcoI	CCATGG	1 cut(s)	835
NdeII	GATC	5 cut(s)	22, 52, 294, 1069, 1120
NlaIII	CATG	5 cut(s)	172, 244, 311, 839, 895
NlaIV	GGNNCC	3 cut(s)	218, 452, 1122
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	177, 485
NspI	RCATGY	2 cut(s)	244, 311
PciI	ACATGT	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	332, 800
PflMI	CCANNNNNTGG	1 cut(s)	447
PfoI	TCCNGGA	1 cut(s)	369
PleI	GAGTC	2 cut(s)	512, 858
PpsI	GAGTC	2 cut(s)	512, 858
PscI	ACATGT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	218, 452, 1122
PspPI	GGNCC	3 cut(s)	216, 373, 814
PsrI	GAACNNNNNNTAC	2 cut(s)	881, 913
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	1120
PvuII	CAGCTG	1 cut(s)	1075
RsaI	GTAC	6 cut(s)	8, 101, 320, 404, 533, 899
RsaNI	GTAC	6 cut(s)	7, 100, 319, 403, 532, 898
RseI	CAYNNNNRTG	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	90, 362, 1028
Sau3AI	GATC	5 cut(s)	22, 52, 294, 1069, 1120
Sau96I	GGNCC	3 cut(s)	216, 373, 814
ScaI	AGTACT	3 cut(s)	8, 101, 320
SchI	GAGTC	2 cut(s)	512, 859
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	469, 661
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	373, 814
SmiMI	CAYNNNNRTG	1 cut(s)	834
Sse9I	AATT	4 cut(s)	118, 728, 777, 1039
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	835
TaaI	ACNGT	6 cut(s)	95, 227, 287, 419, 902, 952
TaqI	TCGA	1 cut(s)	501
TasI	AATT	4 cut(s)	118, 728, 777, 1039
TatI	WGTACW	5 cut(s)	6, 99, 318, 531, 897
TauI	GCSGC	4 cut(s)	552, 625, 652, 871
TfiI	GAWTC	2 cut(s)	332, 800
Tru1I	TTAA	3 cut(s)	90, 362, 1028
Tru9I	TTAA	3 cut(s)	90, 362, 1028
TscAI	CASTG	6 cut(s)	232, 651, 810, 816, 957, 1059
TseFI	GTSAC	2 cut(s)	177, 485
Tsp45I	GTSAC	2 cut(s)	177, 485
TspDTI	ATGAA	3 cut(s)	157, 656, 731
TspRI	CASTG	6 cut(s)	232, 651, 810, 816, 957, 1059
Van91I	CCANNNNNTGG	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	373, 814
XceI	RCATGY	2 cut(s)	244, 311
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 377
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	3 cut(s)	8, 101, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.