Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Forward (+)

53365771 .. 53368342

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGATCAAGAAGAGGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCCCAAACCCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGACAACAACAACAACGATTGGCCCCCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACTCCAAGTGATGTGGGCAAGCTCAACCGTTTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGTAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCGCCTCCTCTACCGCCTAATCAAACCTCTCTCTGGGGAGGCGGAGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCACTACGGCATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAACCCCTACCAATTGCAGCAGCAGCAGCAACAACAACAATACTACCACCACAGGGGAATTAGTCCCGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGGTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAGCATCATCATCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

373

Amino Acids

43.49

Weight (kDa)

6.98

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	81 - 182	7.3e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	502
AclWI	GGATC	4 cut(s)	60, 286, 1071, 1109
AcoI	YGGCCR	1 cut(s)	1050
AfaI	GTAC	6 cut(s)	8, 98, 317, 401, 530, 893
AfiI	CCNNNNNNNGG	5 cut(s)	444, 501, 585, 766, 1052
AflIII	ACRYGT	1 cut(s)	237
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	4 cut(s)	277, 426, 472, 1069
AluI	AGCT	4 cut(s)	277, 426, 472, 1069
Alw21I	GWGCWC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	60, 286, 1071, 1109
AoxI	GGCC	3 cut(s)	212, 620, 1050
ApeKI	GCWGC	9 cut(s)	613, 616, 730, 733, 736, 739, 1027, 1040, 1069
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	213, 370, 808
AsuHPI	GGTGA	7 cut(s)	494, 668, 683, 799, 812, 818, 977
AvaII	GGWCC	2 cut(s)	370, 808
BamHI	GGATCC	1 cut(s)	1114
BauI	CACGAG	1 cut(s)	653
BbsI	GAAGAC	2 cut(s)	75, 930
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	9 cut(s)	600, 628, 742, 745, 748, 751, 1014, 1027, 1056
BccI	CCATC	3 cut(s)	687, 696, 831
BceAI	ACGGC	3 cut(s)	370, 662, 767
BciT130I	CCWGG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	614
BglI	GCCNNNNNGGC	2 cut(s)	646, 1049
BmcAI	AGTACT	3 cut(s)	8, 98, 317
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	370, 808
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	213, 370, 808
BmiI	GGNNCC	3 cut(s)	215, 449, 1116
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	3 cut(s)	466, 658, 979
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	75, 930
BpmI	CTGGAG	2 cut(s)	466, 1037
Bpu10I	CCTNAGC	1 cut(s)	866
BsaJI	CCNNGG	3 cut(s)	386, 783, 829
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	5 cut(s)	444, 501, 585, 766, 1052
Bse118I	RCCGGY	2 cut(s)	450, 1052
Bse1I	ACTGG	6 cut(s)	382, 413, 542, 694, 810, 1053
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	386, 783, 829
BseGI	GGATG	2 cut(s)	131, 679
BseLI	CCNNNNNNNGG	5 cut(s)	444, 501, 585, 766, 1052
BseNI	ACTGG	6 cut(s)	382, 413, 542, 694, 810, 1053
BseRI	GAGGAG	2 cut(s)	127, 549
BseXI	GCAGC	9 cut(s)	600, 628, 742, 745, 748, 751, 1014, 1027, 1056
BshFI	GGCC	3 cut(s)	214, 622, 1052
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	373, 451, 1053
BslFI	GGGAC	2 cut(s)	527, 762
BslI	CCNNNNNNNGG	5 cut(s)	444, 501, 585, 766, 1052
BsmFI	GGGAC	2 cut(s)	527, 762
BsnI	GGCC	3 cut(s)	214, 622, 1052
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	22, 52, 291, 1063, 1114
Bsp19I	CCATGG	1 cut(s)	829
BspANI	GGCC	3 cut(s)	214, 622, 1052
BspLI	GGNNCC	3 cut(s)	215, 449, 1116
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	4 cut(s)	60, 286, 1071, 1109
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	450, 1052
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	6 cut(s)	382, 413, 542, 694, 810, 1053
BssAI	RCCGGY	2 cut(s)	450, 1052
BssECI	CCNNGG	3 cut(s)	386, 783, 829
BssMI	GATC	5 cut(s)	22, 52, 291, 1063, 1114
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	829
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	6 cut(s)	92, 224, 284, 416, 896, 946
Bst6I	CTCTTC	2 cut(s)	42, 54
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	179, 866
BstDSI	CCRYGG	3 cut(s)	386, 783, 829
BstF5I	GGATG	2 cut(s)	131, 679
BstKTI	GATC	5 cut(s)	25, 55, 294, 1066, 1117
BstMBI	GATC	5 cut(s)	22, 52, 291, 1063, 1114
BstMWI	GCNNNNNNNGC	8 cut(s)	619, 646, 655, 736, 739, 868, 1049, 1058
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	2 cut(s)	241, 308
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	9 cut(s)	600, 628, 742, 745, 748, 751, 1014, 1027, 1056
BstV2I	GAAGAC	2 cut(s)	75, 930
BstX2I	RGATCY	1 cut(s)	1114
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	1114
BsuRI	GGCC	3 cut(s)	214, 622, 1052
BtgI	CCRYGG	3 cut(s)	386, 783, 829
BtsCI	GGATG	2 cut(s)	131, 679
BtsIMutI	CAGTG	5 cut(s)	229, 803, 804, 951, 1046
Cac8I	GCNNGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	450, 1052
Cfr13I	GGNCC	3 cut(s)	213, 370, 808
Csp6I	GTAC	6 cut(s)	7, 97, 316, 400, 529, 892
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	5 cut(s)	166, 238, 305, 830, 886
CviQI	GTAC	6 cut(s)	7, 97, 316, 400, 529, 892
DdeI	CTNAG	2 cut(s)	179, 866
DpnI	GATC	5 cut(s)	24, 54, 293, 1065, 1116
DpnII	GATC	5 cut(s)	22, 52, 291, 1063, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	521
DriI	GACNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	1050
Eam1104I	CTCTTC	2 cut(s)	42, 54
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	2 cut(s)	42, 54
EciI	GGCGGA	2 cut(s)	543, 609
Eco130I	CCWWGG	1 cut(s)	829
Eco47I	GGWCC	2 cut(s)	370, 808
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	5 cut(s)	169, 241, 308, 833, 889
FaqI	GGGAC	2 cut(s)	527, 762
FatI	CATG	5 cut(s)	165, 237, 304, 829, 885
FauI	CCCGC	1 cut(s)	787
FokI	GGATG	2 cut(s)	118, 666
GsuI	CTGGAG	2 cut(s)	466, 1037
HaeIII	GGCC	3 cut(s)	214, 622, 1052
HapII	CCGG	3 cut(s)	373, 451, 1053
Hin1II	CATG	5 cut(s)	169, 241, 308, 833, 889
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	329, 515, 794, 844
HpaII	CCGG	3 cut(s)	373, 451, 1053
HphI	GGTGA	7 cut(s)	494, 668, 683, 799, 812, 818, 977
Hpy166II	GTNNAC	2 cut(s)	336, 883
Hpy188I	TCNGA	4 cut(s)	40, 711, 930, 1078
Hpy188III	TCNNGA	3 cut(s)	56, 653, 1016
Hpy8I	GTNNAC	2 cut(s)	336, 883
HpyAV	CCTTC	5 cut(s)	117, 340, 505, 998, 1002
HpyCH4III	ACNGT	6 cut(s)	92, 224, 284, 416, 896, 946
HpyCH4V	TGCA	4 cut(s)	16, 616, 730, 904
HpyF10VI	GCNNNNNNNGC	8 cut(s)	619, 646, 655, 736, 739, 868, 1049, 1058
HpyF3I	CTNAG	2 cut(s)	179, 866
Hsp92II	CATG	5 cut(s)	169, 241, 308, 833, 889
Kzo9I	GATC	5 cut(s)	22, 52, 291, 1063, 1114
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	9 cut(s)	600, 628, 742, 745, 748, 751, 1014, 1027, 1056
LweI	GCATC	3 cut(s)	466, 658, 979
MaeIII	GTNAC	3 cut(s)	174, 253, 482
MalI	GATC	5 cut(s)	24, 54, 293, 1065, 1116
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	5 cut(s)	22, 52, 291, 1063, 1114
MboII	GAAGA	8 cut(s)	59, 71, 77, 80, 920, 930, 987, 990
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	1 cut(s)	1114
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	4 cut(s)	115, 725, 771, 1033
MlyI	GAGTC	2 cut(s)	509, 853
MmeI	TCCRAC	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	3 cut(s)	87, 359, 1022
MslI	CAYNNNNRTG	1 cut(s)	828
MspA1I	CMGCKG	3 cut(s)	619, 1061, 1069
MspI	CCGG	3 cut(s)	373, 451, 1053
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	8 cut(s)	619, 646, 655, 736, 739, 868, 1049, 1058
NcoI	CCATGG	1 cut(s)	829
NdeII	GATC	5 cut(s)	22, 52, 291, 1063, 1114
NlaIII	CATG	5 cut(s)	169, 241, 308, 833, 889
NlaIV	GGNNCC	3 cut(s)	215, 449, 1116
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	174, 482
NspI	RCATGY	2 cut(s)	241, 308
PciI	ACATGT	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	329, 794
PflMI	CCANNNNNTGG	1 cut(s)	444
PfoI	TCCNGGA	1 cut(s)	366
PleI	GAGTC	2 cut(s)	509, 852
PpsI	GAGTC	2 cut(s)	509, 852
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	215, 449, 1116
PspPI	GGNCC	3 cut(s)	213, 370, 808
PsrI	GAACNNNNNNTAC	2 cut(s)	875, 907
PstI	CTGCAG	1 cut(s)	618
PsuI	RGATCY	1 cut(s)	1114
PvuII	CAGCTG	1 cut(s)	1069
RsaI	GTAC	6 cut(s)	8, 98, 317, 401, 530, 893
RsaNI	GTAC	6 cut(s)	7, 97, 316, 400, 529, 892
RseI	CAYNNNNRTG	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	87, 359, 1022
Sau3AI	GATC	5 cut(s)	22, 52, 291, 1063, 1114
Sau96I	GGNCC	3 cut(s)	213, 370, 808
ScaI	AGTACT	3 cut(s)	8, 98, 317
SchI	GAGTC	2 cut(s)	509, 853
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	279, 401, 428, 474, 581, 990, 1015, 1071
SfaNI	GCATC	3 cut(s)	466, 658, 979
SfcI	CTRYAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	370, 808
SmiMI	CAYNNNNRTG	1 cut(s)	828
Sse9I	AATT	4 cut(s)	115, 725, 771, 1033
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	6 cut(s)	92, 224, 284, 416, 896, 946
TaqI	TCGA	1 cut(s)	498
TasI	AATT	4 cut(s)	115, 725, 771, 1033
TatI	WGTACW	5 cut(s)	6, 96, 315, 528, 891
TauI	GCSGC	3 cut(s)	549, 622, 865
TfiI	GAWTC	2 cut(s)	329, 794
Tru1I	TTAA	3 cut(s)	87, 359, 1022
Tru9I	TTAA	3 cut(s)	87, 359, 1022
TscAI	CASTG	5 cut(s)	229, 804, 810, 951, 1053
TseFI	GTSAC	2 cut(s)	174, 482
TseI	GCWGC	9 cut(s)	613, 616, 730, 733, 736, 739, 1027, 1040, 1069
Tsp45I	GTSAC	2 cut(s)	174, 482
TspDTI	ATGAA	4 cut(s)	154, 653, 728, 927
TspRI	CASTG	5 cut(s)	229, 804, 810, 951, 1053
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	370, 808
XceI	RCATGY	2 cut(s)	241, 308
XcmI	CCANNNNNNNNNTGG	2 cut(s)	163, 374
XmnI	GAANNNNTTC	1 cut(s)	317
ZrmI	AGTACT	3 cut(s)	8, 98, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.