Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Reverse (-)

14326812 .. 14327951

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGATCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCTCAAACTCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGACGACAACAAGAACAACAACAACAACGATTGGCCCCCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACCCCAAGTGATGTGGGCAAGCTCAACCGTCTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGTCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGCAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCGCCTCCTCTACCGCCTAATCAAACCTCTCTCTGGGGAGGCGGTGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCGCTGCGGCATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAACCCCTACCAATTGCAGCAGCAGCAGCAGCAACAACAGCAATACTACCACCACAGAGGAATTAGTCCAGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGTTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAACATCATCATCATCATCACCTTCCTTCTTCTTCGCTTCCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGCAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

380

Amino Acids

44.24

Weight (kDa)

6.83

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	86 - 188	2.7e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	517
AclWI	GGATC	4 cut(s)	60, 301, 1089, 1127
AcoI	YGGCCR	1 cut(s)	1068
AfaI	GTAC	6 cut(s)	8, 101, 332, 416, 545, 911
AfiI	CCNNNNNNNGG	4 cut(s)	459, 516, 600, 1070
AflIII	ACRYGT	1 cut(s)	252
AhdI	GACNNNNNGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	4 cut(s)	292, 441, 487, 1087
AluI	AGCT	4 cut(s)	292, 441, 487, 1087
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	4 cut(s)	60, 301, 1089, 1127
AoxI	GGCC	3 cut(s)	227, 635, 1068
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	228, 385, 826
AsuHPI	GGTGA	7 cut(s)	509, 683, 698, 817, 830, 836, 995
AvaII	GGWCC	2 cut(s)	385, 826
BamHI	GGATCC	1 cut(s)	1132
BauI	CACGAG	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	78, 948
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	3 cut(s)	702, 711, 849
BceAI	ACGGC	2 cut(s)	385, 785
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	629
BglI	GCCNNNNNGGC	2 cut(s)	661, 1067
BmcAI	AGTACT	3 cut(s)	8, 101, 332
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	385, 826
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	228, 385, 826
BmiI	GGNNCC	2 cut(s)	230, 1134
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	481, 673
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	78, 948
BpmI	CTGGAG	3 cut(s)	135, 481, 1055
Bpu10I	CCTNAGC	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	401, 801
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	4 cut(s)	459, 516, 600, 1070
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	6 cut(s)	397, 428, 557, 709, 828, 1071
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	401, 801
BseGI	GGATG	2 cut(s)	134, 694
BseLI	CCNNNNNNNGG	4 cut(s)	459, 516, 600, 1070
BseNI	ACTGG	6 cut(s)	397, 428, 557, 709, 828, 1071
BseRI	GAGGAG	2 cut(s)	130, 564
BshFI	GGCC	3 cut(s)	229, 637, 1070
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	388, 1071
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	4 cut(s)	459, 516, 600, 1070
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	229, 637, 1070
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	22, 52, 306, 1081, 1132
BspANI	GGCC	3 cut(s)	229, 637, 1070
BspLI	GGNNCC	2 cut(s)	230, 1134
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	4 cut(s)	60, 301, 1089, 1127
BsrBI	CCGCTC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	1070
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	6 cut(s)	397, 428, 557, 709, 828, 1071
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	2 cut(s)	401, 801
BssMI	GATC	5 cut(s)	22, 52, 306, 1081, 1132
BssSI	CACGAG	1 cut(s)	668
Bst2BI	CACGAG	1 cut(s)	668
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	6 cut(s)	95, 239, 299, 431, 914, 964
Bst6I	CTCTTC	2 cut(s)	42, 54
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	182, 884
BstDSI	CCRYGG	2 cut(s)	401, 801
BstF5I	GGATG	2 cut(s)	134, 694
BstKTI	GATC	5 cut(s)	25, 55, 309, 1084, 1135
BstMBI	GATC	5 cut(s)	22, 52, 306, 1081, 1132
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	256, 323
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	629
BstV2I	GAAGAC	2 cut(s)	78, 948
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
BsuRI	GGCC	3 cut(s)	229, 637, 1070
BtgI	CCRYGG	2 cut(s)	401, 801
BtsCI	GGATG	2 cut(s)	134, 694
BtsIMutI	CAGTG	5 cut(s)	244, 821, 822, 969, 1064
Cac8I	GCNNGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	3 cut(s)	228, 385, 826
Csp6I	GTAC	6 cut(s)	7, 100, 331, 415, 544, 910
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	5 cut(s)	169, 253, 320, 848, 904
CviQI	GTAC	6 cut(s)	7, 100, 331, 415, 544, 910
DdeI	CTNAG	2 cut(s)	182, 884
DpnI	GATC	5 cut(s)	24, 54, 308, 1083, 1134
DpnII	GATC	5 cut(s)	22, 52, 306, 1081, 1132
DrdI	GACNNNNNNGTC	1 cut(s)	536
DriI	GACNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	1068
Eam1104I	CTCTTC	2 cut(s)	42, 54
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	2 cut(s)	42, 54
EciI	GGCGGA	1 cut(s)	558
Eco47I	GGWCC	2 cut(s)	385, 826
EcoRII	CCWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	172, 256, 323, 851, 907
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	5 cut(s)	168, 252, 319, 847, 903
FokI	GGATG	2 cut(s)	121, 681
FspBI	CTAG	1 cut(s)	302
GsuI	CTGGAG	3 cut(s)	135, 481, 1055
HaeIII	GGCC	3 cut(s)	229, 637, 1070
HapII	CCGG	2 cut(s)	388, 1071
Hin1II	CATG	5 cut(s)	172, 256, 323, 851, 907
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	5 cut(s)	344, 463, 530, 812, 862
HpaII	CCGG	2 cut(s)	388, 1071
HphI	GGTGA	7 cut(s)	509, 683, 698, 817, 830, 836, 995
Hpy166II	GTNNAC	2 cut(s)	351, 901
Hpy188I	TCNGA	4 cut(s)	40, 726, 948, 1096
Hpy188III	TCNNGA	4 cut(s)	56, 152, 668, 1034
Hpy8I	GTNNAC	2 cut(s)	351, 901
HpyAV	CCTTC	5 cut(s)	120, 355, 520, 1016, 1020
HpyCH4III	ACNGT	6 cut(s)	95, 239, 299, 431, 914, 964
HpyCH4V	TGCA	5 cut(s)	16, 524, 631, 745, 922
HpyF3I	CTNAG	2 cut(s)	182, 884
Hsp92II	CATG	5 cut(s)	172, 256, 323, 851, 907
Kzo9I	GATC	5 cut(s)	22, 52, 306, 1081, 1132
LweI	GCATC	2 cut(s)	481, 673
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	177, 268, 497
MalI	GATC	5 cut(s)	24, 54, 308, 1083, 1134
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	5 cut(s)	22, 52, 306, 1081, 1132
MboII	GAAGA	9 cut(s)	59, 71, 77, 80, 83, 938, 948, 1005, 1008
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	118, 740, 789, 1051
MlyI	GAGTC	3 cut(s)	472, 524, 871
MmeI	TCCRAC	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	4 cut(s)	90, 374, 852, 1040
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	4 cut(s)	634, 658, 1079, 1087
MspI	CCGG	2 cut(s)	388, 1071
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	383
NdeII	GATC	5 cut(s)	22, 52, 306, 1081, 1132
NlaIII	CATG	5 cut(s)	172, 256, 323, 851, 907
NlaIV	GGNNCC	2 cut(s)	230, 1134
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	177, 497
NspI	RCATGY	2 cut(s)	256, 323
PciI	ACATGT	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	344, 812
PflMI	CCANNNNNTGG	1 cut(s)	459
PfoI	TCCNGGA	1 cut(s)	381
PleI	GAGTC	3 cut(s)	471, 524, 870
PpsI	GAGTC	3 cut(s)	471, 524, 870
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	230, 1134
PspPI	GGNCC	3 cut(s)	228, 385, 826
PsrI	GAACNNNNNNTAC	2 cut(s)	893, 925
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	1132
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	6 cut(s)	8, 101, 332, 416, 545, 911
RsaNI	GTAC	6 cut(s)	7, 100, 331, 415, 544, 910
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	4 cut(s)	90, 374, 852, 1040
Sau3AI	GATC	5 cut(s)	22, 52, 306, 1081, 1132
Sau96I	GGNCC	3 cut(s)	228, 385, 826
ScaI	AGTACT	3 cut(s)	8, 101, 332
SchI	GAGTC	3 cut(s)	472, 524, 871
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	294, 416, 443, 489, 596, 1008, 1033, 1089
SfaNI	GCATC	2 cut(s)	481, 673
SfcI	CTRYAG	1 cut(s)	629
SinI	GGWCC	2 cut(s)	385, 826
SmiMI	CAYNNNNRTG	1 cut(s)	846
Sse9I	AATT	4 cut(s)	118, 740, 789, 1051
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	6 cut(s)	95, 239, 299, 431, 914, 964
TaqI	TCGA	1 cut(s)	513
TasI	AATT	4 cut(s)	118, 740, 789, 1051
TatI	WGTACW	5 cut(s)	6, 99, 330, 543, 909
TauI	GCSGC	5 cut(s)	564, 637, 658, 664, 883
TfiI	GAWTC	2 cut(s)	344, 812
Tru1I	TTAA	4 cut(s)	90, 374, 852, 1040
Tru9I	TTAA	4 cut(s)	90, 374, 852, 1040
TscAI	CASTG	5 cut(s)	244, 822, 828, 969, 1071
TseFI	GTSAC	2 cut(s)	177, 497
Tsp45I	GTSAC	2 cut(s)	177, 497
TspDTI	ATGAA	4 cut(s)	157, 668, 743, 945
TspRI	CASTG	5 cut(s)	244, 822, 828, 969, 1071
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	385, 826
XceI	RCATGY	2 cut(s)	256, 323
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 389
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	3 cut(s)	8, 101, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.