Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Reverse (-)

14898049 .. 14900300

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGACCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCCCAAACCCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGATGACAACAACAACAACAACAACAACGATTGGCCCCCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACCCCAAGTGATGTGGGCAAGCTCAACCGTCTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGTAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCGCCTCCTCTACCGCCTAATCAAACCTCTCTCTGGGGAGGCGGAGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCGCTGCGACATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAACCCCTACCAATTGCAGCAGCAGCAGCAGCAGCAACAACAACAACAATACTACCACCACAGAGGAATTAGTCCCGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGGTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCACCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

378

Amino Acids

44.06

Weight (kDa)

6.68

Isoelectric Point (pI)

63.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	86 - 187	7.5e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	517
AclWI	GGATC	3 cut(s)	301, 1086, 1124
AcoI	YGGCCR	1 cut(s)	1065
AfaI	GTAC	6 cut(s)	8, 101, 332, 416, 545, 917
AfiI	CCNNNNNNNGG	5 cut(s)	61, 459, 516, 600, 1067
AflIII	ACRYGT	1 cut(s)	252
AhdI	GACNNNNNGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	4 cut(s)	292, 441, 487, 1084
AluI	AGCT	4 cut(s)	292, 441, 487, 1084
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	3 cut(s)	301, 1086, 1124
AoxI	GGCC	3 cut(s)	227, 635, 1065
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	52, 228, 385, 832
AsuHPI	GGTGA	8 cut(s)	509, 683, 698, 823, 836, 842, 983, 992
AvaII	GGWCC	3 cut(s)	52, 385, 832
BamHI	GGATCC	1 cut(s)	1129
BauI	CACGAG	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	78, 954
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	4 cut(s)	702, 711, 855, 1002
BceAI	ACGGC	2 cut(s)	385, 791
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	629
BglI	GCCNNNNNGGC	1 cut(s)	1064
BmcAI	AGTACT	3 cut(s)	8, 101, 332
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	3 cut(s)	52, 385, 832
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmgT120I	GGNCC	4 cut(s)	52, 228, 385, 832
BmiI	GGNNCC	3 cut(s)	230, 464, 1131
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	78, 954
BpmI	CTGGAG	2 cut(s)	481, 1052
Bpu10I	CCTNAGC	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	401, 807, 853
BsaWI	WCCGGW	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 459, 516, 600, 1067
Bse118I	RCCGGY	2 cut(s)	465, 1067
Bse1I	ACTGG	6 cut(s)	397, 428, 557, 709, 834, 1068
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	3 cut(s)	401, 807, 853
BseGI	GGATG	2 cut(s)	134, 694
BseLI	CCNNNNNNNGG	5 cut(s)	61, 459, 516, 600, 1067
BseNI	ACTGG	6 cut(s)	397, 428, 557, 709, 834, 1068
BseRI	GAGGAG	2 cut(s)	130, 564
BshFI	GGCC	3 cut(s)	229, 637, 1067
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	388, 466, 1068
BslFI	GGGAC	2 cut(s)	542, 786
BslI	CCNNNNNNNGG	5 cut(s)	61, 459, 516, 600, 1067
BsmFI	GGGAC	2 cut(s)	542, 786
BsnI	GGCC	3 cut(s)	229, 637, 1067
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	22, 306, 1078, 1129
Bsp19I	CCATGG	1 cut(s)	853
BspANI	GGCC	3 cut(s)	229, 637, 1067
BspLI	GGNNCC	3 cut(s)	230, 464, 1131
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	3 cut(s)	301, 1086, 1124
BsrBI	CCGCTC	1 cut(s)	517
BsrFI	RCCGGY	2 cut(s)	465, 1067
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	6 cut(s)	397, 428, 557, 709, 834, 1068
BssAI	RCCGGY	2 cut(s)	465, 1067
BssECI	CCNNGG	3 cut(s)	401, 807, 853
BssMI	GATC	4 cut(s)	22, 306, 1078, 1129
BssSI	CACGAG	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	853
Bst2BI	CACGAG	1 cut(s)	668
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	6 cut(s)	95, 239, 299, 431, 920, 970
Bst6I	CTCTTC	2 cut(s)	42, 54
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	182, 890
BstDSI	CCRYGG	3 cut(s)	401, 807, 853
BstF5I	GGATG	2 cut(s)	134, 694
BstKTI	GATC	4 cut(s)	25, 309, 1081, 1132
BstMBI	GATC	4 cut(s)	22, 306, 1078, 1129
BstMWI	GCNNNNNNNGC	8 cut(s)	634, 751, 754, 757, 760, 892, 1064, 1073
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	256, 323
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	629
BstV2I	GAAGAC	2 cut(s)	78, 954
BstX2I	RGATCY	1 cut(s)	1129
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	1129
BsuRI	GGCC	3 cut(s)	229, 637, 1067
BtgI	CCRYGG	3 cut(s)	401, 807, 853
BtsCI	GGATG	2 cut(s)	134, 694
BtsIMutI	CAGTG	5 cut(s)	244, 827, 828, 975, 1061
Cac8I	GCNNGC	1 cut(s)	290
Cfr10I	RCCGGY	2 cut(s)	465, 1067
Cfr13I	GGNCC	4 cut(s)	52, 228, 385, 832
Csp6I	GTAC	6 cut(s)	7, 100, 331, 415, 544, 916
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	5 cut(s)	169, 253, 320, 854, 910
CviQI	GTAC	6 cut(s)	7, 100, 331, 415, 544, 916
DdeI	CTNAG	2 cut(s)	182, 890
DpnI	GATC	4 cut(s)	24, 308, 1080, 1131
DpnII	GATC	4 cut(s)	22, 306, 1078, 1129
DrdI	GACNNNNNNGTC	1 cut(s)	536
DriI	GACNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	1065
Eam1104I	CTCTTC	2 cut(s)	42, 54
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	2 cut(s)	42, 54
EciI	GGCGGA	2 cut(s)	558, 624
Eco130I	CCWWGG	1 cut(s)	853
Eco47I	GGWCC	3 cut(s)	52, 385, 832
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	5 cut(s)	172, 256, 323, 857, 913
FaqI	GGGAC	2 cut(s)	542, 786
FatI	CATG	5 cut(s)	168, 252, 319, 853, 909
FauI	CCCGC	1 cut(s)	811
FokI	GGATG	2 cut(s)	121, 681
FspBI	CTAG	1 cut(s)	302
GsuI	CTGGAG	2 cut(s)	481, 1052
HaeIII	GGCC	3 cut(s)	229, 637, 1067
HapII	CCGG	3 cut(s)	388, 466, 1068
Hin1II	CATG	5 cut(s)	172, 256, 323, 857, 913
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	344, 530, 818, 868
HpaII	CCGG	3 cut(s)	388, 466, 1068
HphI	GGTGA	8 cut(s)	509, 683, 698, 823, 836, 842, 983, 992
Hpy166II	GTNNAC	2 cut(s)	351, 907
Hpy188I	TCNGA	4 cut(s)	40, 726, 954, 1093
Hpy188III	TCNNGA	2 cut(s)	668, 1031
Hpy8I	GTNNAC	2 cut(s)	351, 907
HpyAV	CCTTC	5 cut(s)	120, 355, 520, 1013, 1017
HpyCH4III	ACNGT	6 cut(s)	95, 239, 299, 431, 920, 970
HpyCH4V	TGCA	4 cut(s)	16, 631, 745, 928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	634, 751, 754, 757, 760, 892, 1064, 1073
HpyF3I	CTNAG	2 cut(s)	182, 890
Hsp92II	CATG	5 cut(s)	172, 256, 323, 857, 913
Kzo9I	GATC	4 cut(s)	22, 306, 1078, 1129
LmnI	GCTCC	1 cut(s)	462
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	177, 268, 497
MalI	GATC	4 cut(s)	24, 308, 1080, 1131
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	4 cut(s)	22, 306, 1078, 1129
MboII	GAAGA	9 cut(s)	59, 71, 77, 80, 83, 944, 954, 1002, 1005
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	1 cut(s)	1129
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	118, 740, 795, 1048
MlyI	GAGTC	2 cut(s)	524, 877
MmeI	TCCRAC	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	3 cut(s)	90, 374, 1037
MslI	CAYNNNNRTG	1 cut(s)	852
MspA1I	CMGCKG	4 cut(s)	634, 658, 1076, 1084
MspI	CCGG	3 cut(s)	388, 466, 1068
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	8 cut(s)	634, 751, 754, 757, 760, 892, 1064, 1073
NcoI	CCATGG	1 cut(s)	853
NdeII	GATC	4 cut(s)	22, 306, 1078, 1129
NlaIII	CATG	5 cut(s)	172, 256, 323, 857, 913
NlaIV	GGNNCC	3 cut(s)	230, 464, 1131
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	177, 497
NspI	RCATGY	2 cut(s)	256, 323
PciI	ACATGT	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	344, 818
PflMI	CCANNNNNTGG	1 cut(s)	459
PfoI	TCCNGGA	1 cut(s)	381
PleI	GAGTC	2 cut(s)	524, 876
PpsI	GAGTC	2 cut(s)	524, 876
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	230, 464, 1131
PspPI	GGNCC	4 cut(s)	52, 228, 385, 832
PsrI	GAACNNNNNNTAC	2 cut(s)	899, 931
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	1129
PvuII	CAGCTG	1 cut(s)	1084
RsaI	GTAC	6 cut(s)	8, 101, 332, 416, 545, 917
RsaNI	GTAC	6 cut(s)	7, 100, 331, 415, 544, 916
RseI	CAYNNNNRTG	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	90, 374, 1037
Sau3AI	GATC	4 cut(s)	22, 306, 1078, 1129
Sau96I	GGNCC	4 cut(s)	52, 228, 385, 832
ScaI	AGTACT	3 cut(s)	8, 101, 332
SchI	GAGTC	2 cut(s)	524, 877
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	294, 416, 443, 489, 596, 1005, 1030, 1086
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	629
SinI	GGWCC	3 cut(s)	52, 385, 832
SmiMI	CAYNNNNRTG	1 cut(s)	852
Sse9I	AATT	4 cut(s)	118, 740, 795, 1048
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	6 cut(s)	95, 239, 299, 431, 920, 970
TaqI	TCGA	1 cut(s)	513
TasI	AATT	4 cut(s)	118, 740, 795, 1048
TatI	WGTACW	5 cut(s)	6, 99, 330, 543, 915
TauI	GCSGC	4 cut(s)	564, 637, 658, 889
TfiI	GAWTC	2 cut(s)	344, 818
Tru1I	TTAA	3 cut(s)	90, 374, 1037
Tru9I	TTAA	3 cut(s)	90, 374, 1037
TscAI	CASTG	5 cut(s)	244, 828, 834, 975, 1068
TseFI	GTSAC	2 cut(s)	177, 497
Tsp45I	GTSAC	2 cut(s)	177, 497
TspDTI	ATGAA	4 cut(s)	157, 668, 743, 951
TspRI	CASTG	5 cut(s)	244, 828, 834, 975, 1068
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	3 cut(s)	52, 385, 832
XceI	RCATGY	2 cut(s)	256, 323
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 389
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	3 cut(s)	8, 101, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.