Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011010

Physical Location & Seq

Genomic Coordinates Forward (+)

51859833 .. 51866620

Gene Structure 6788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGATCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCCCAAACCCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGACAACAACAACAACAACGATTGGCCACCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACTCCAAGTGATGTGGGCAAGCTCAACCGTCTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGTAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCGCCTCCTCTACCGCCTAATCAAACCTCTCTCTGGGGAGGCGGAGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCGCTGCGGCATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATGAGCCCCTACCAATTGCAGCAGCAGCAGCAGCAACAACAACAATACTACCACCACAGAGGAATTAGTCCCGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGGTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAACATCATCATCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAGTTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTTGGATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

376

Amino Acids

43.84

Weight (kDa)

6.83

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	83 - 184	7.4e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61970
fragaria_vesca	FvH4_7g17930
malus_domestica	MD01G1091800.v1.1 MD07G1162400.v1.1
prunus_persica	Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1 Prupe.2G201000_v2.0.a1
pyrus_communis	pycom01g11570 pycom07g15750
rosa_chinensis	RchiOBHm_Chr1g0361371
rosa_laevigata	RLG00000027721
rosa_multiflora	Rmu_sc0002119.1_g000023 Rmu_sc0027344.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295010
rosa_rugosa	Rorug01G0289000
rosa_samantha	Rh1AG299900 Rh1BG263600 Rh1CG281200 Rh1DG293600
rosa_wichuraiana	Rw1G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccBSI	CCGCTC	1 cut(s)	508
AclWI	GGATC	4 cut(s)	60, 292, 1080, 1118
AcoI	YGGCCR	2 cut(s)	218, 1059
AfaI	GTAC	6 cut(s)	8, 101, 323, 407, 536, 902
AfiI	CCNNNNNNNGG	4 cut(s)	450, 507, 591, 1061
AflIII	ACRYGT	1 cut(s)	243
AhdI	GACNNNNNGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	4 cut(s)	283, 432, 478, 1078
AluI	AGCT	4 cut(s)	283, 432, 478, 1078
Alw21I	GWGCWC	1 cut(s)	243
AlwI	GGATC	4 cut(s)	60, 292, 1080, 1118
AoxI	GGCC	3 cut(s)	218, 626, 1059
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	376, 817
AsuHPI	GGTGA	7 cut(s)	500, 674, 689, 808, 821, 827, 986
AvaII	GGWCC	2 cut(s)	376, 817
BalI	TGGCCA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	725
BauI	CACGAG	1 cut(s)	659
BbsI	GAAGAC	2 cut(s)	78, 939
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	3 cut(s)	693, 702, 840
BceAI	ACGGC	2 cut(s)	376, 776
BciT130I	CCWGG	1 cut(s)	374
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	620
BglI	GCCNNNNNGGC	2 cut(s)	652, 1058
BmcAI	AGTACT	3 cut(s)	8, 101, 323
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	376, 817
BmeRI	GACNNNNNGTC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	376, 817
BmiI	GGNNCC	2 cut(s)	455, 1125
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	472, 664
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	78, 939
BpmI	CTGGAG	2 cut(s)	472, 1046
Bpu10I	CCTNAGC	1 cut(s)	875
BsaJI	CCNNGG	3 cut(s)	392, 792, 838
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	4 cut(s)	450, 507, 591, 1061
Bse118I	RCCGGY	2 cut(s)	456, 1061
Bse1I	ACTGG	6 cut(s)	388, 419, 548, 700, 819, 1062
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	3 cut(s)	392, 792, 838
BseGI	GGATG	2 cut(s)	134, 685
BseLI	CCNNNNNNNGG	4 cut(s)	450, 507, 591, 1061
BseNI	ACTGG	6 cut(s)	388, 419, 548, 700, 819, 1062
BseRI	GAGGAG	2 cut(s)	130, 555
BshFI	GGCC	3 cut(s)	220, 628, 1061
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	3 cut(s)	379, 457, 1062
BslFI	GGGAC	2 cut(s)	533, 771
BslI	CCNNNNNNNGG	4 cut(s)	450, 507, 591, 1061
BsmFI	GGGAC	2 cut(s)	533, 771
BsnI	GGCC	3 cut(s)	220, 628, 1061
Bsp1286I	GDGCHC	2 cut(s)	243, 725
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	5 cut(s)	22, 52, 297, 1072, 1123
Bsp19I	CCATGG	1 cut(s)	838
BspANI	GGCC	3 cut(s)	220, 628, 1061
BspLI	GGNNCC	2 cut(s)	455, 1125
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	4 cut(s)	60, 292, 1080, 1118
BsrBI	CCGCTC	1 cut(s)	508
BsrFI	RCCGGY	2 cut(s)	456, 1061
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	6 cut(s)	388, 419, 548, 700, 819, 1062
BssAI	RCCGGY	2 cut(s)	456, 1061
BssECI	CCNNGG	3 cut(s)	392, 792, 838
BssMI	GATC	5 cut(s)	22, 52, 297, 1072, 1123
BssSI	CACGAG	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	838
Bst2BI	CACGAG	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	6 cut(s)	95, 230, 290, 422, 905, 955
Bst6I	CTCTTC	2 cut(s)	42, 54
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	2 cut(s)	182, 875
BstDSI	CCRYGG	3 cut(s)	392, 792, 838
BstF5I	GGATG	2 cut(s)	134, 685
BstKTI	GATC	5 cut(s)	25, 55, 300, 1075, 1126
BstMBI	GATC	5 cut(s)	22, 52, 297, 1072, 1123
BstMWI	GCNNNNNNNGC	9 cut(s)	625, 652, 661, 742, 745, 748, 877, 1058, 1067
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	247, 314
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	620
BstV2I	GAAGAC	2 cut(s)	78, 939
BstX2I	RGATCY	1 cut(s)	1123
BstXI	CCANNNNNNTGG	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	1123
BsuRI	GGCC	3 cut(s)	220, 628, 1061
BtgI	CCRYGG	3 cut(s)	392, 792, 838
BtsCI	GGATG	2 cut(s)	134, 685
BtsIMutI	CAGTG	5 cut(s)	235, 812, 813, 960, 1055
Cac8I	GCNNGC	1 cut(s)	281
Cfr10I	RCCGGY	2 cut(s)	456, 1061
Cfr13I	GGNCC	2 cut(s)	376, 817
Csp6I	GTAC	6 cut(s)	7, 100, 322, 406, 535, 901
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	5 cut(s)	169, 244, 311, 839, 895
CviQI	GTAC	6 cut(s)	7, 100, 322, 406, 535, 901
DdeI	CTNAG	2 cut(s)	182, 875
DpnI	GATC	5 cut(s)	24, 54, 299, 1074, 1125
DpnII	GATC	5 cut(s)	22, 52, 297, 1072, 1123
DrdI	GACNNNNNNGTC	1 cut(s)	527
DriI	GACNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	2 cut(s)	218, 1059
Eam1104I	CTCTTC	2 cut(s)	42, 54
Eam1105I	GACNNNNNGTC	1 cut(s)	496
EarI	CTCTTC	2 cut(s)	42, 54
EciI	GGCGGA	2 cut(s)	549, 615
Eco130I	CCWWGG	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	376, 817
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	838
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	5 cut(s)	172, 247, 314, 842, 898
FaqI	GGGAC	2 cut(s)	533, 771
FatI	CATG	5 cut(s)	168, 243, 310, 838, 894
FauI	CCCGC	1 cut(s)	796
FokI	GGATG	2 cut(s)	121, 672
FriOI	GRGCYC	1 cut(s)	725
FspBI	CTAG	1 cut(s)	293
GsuI	CTGGAG	2 cut(s)	472, 1046
HaeIII	GGCC	3 cut(s)	220, 628, 1061
HapII	CCGG	3 cut(s)	379, 457, 1062
Hin1II	CATG	5 cut(s)	172, 247, 314, 842, 898
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	4 cut(s)	335, 521, 803, 853
HpaII	CCGG	3 cut(s)	379, 457, 1062
HphI	GGTGA	7 cut(s)	500, 674, 689, 808, 821, 827, 986
Hpy166II	GTNNAC	2 cut(s)	342, 892
Hpy188I	TCNGA	4 cut(s)	40, 717, 939, 1087
Hpy188III	TCNNGA	3 cut(s)	56, 659, 1025
Hpy8I	GTNNAC	2 cut(s)	342, 892
HpyAV	CCTTC	5 cut(s)	120, 346, 511, 1007, 1011
HpyCH4III	ACNGT	6 cut(s)	95, 230, 290, 422, 905, 955
HpyCH4V	TGCA	4 cut(s)	16, 622, 736, 913
HpyF10VI	GCNNNNNNNGC	9 cut(s)	625, 652, 661, 742, 745, 748, 877, 1058, 1067
HpyF3I	CTNAG	2 cut(s)	182, 875
Hsp92II	CATG	5 cut(s)	172, 247, 314, 842, 898
Kzo9I	GATC	5 cut(s)	22, 52, 297, 1072, 1123
LmnI	GCTCC	1 cut(s)	453
LweI	GCATC	2 cut(s)	472, 664
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	177, 259, 488
MalI	GATC	5 cut(s)	24, 54, 299, 1074, 1125
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	5 cut(s)	22, 52, 297, 1072, 1123
MboII	GAAGA	9 cut(s)	59, 71, 77, 80, 83, 929, 939, 996, 999
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	1 cut(s)	1123
MhlI	GDGCHC	2 cut(s)	243, 725
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	4 cut(s)	118, 731, 780, 1042
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	515, 862
MmeI	TCCRAC	1 cut(s)	844
Mox20I	TGGCCA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	3 cut(s)	90, 365, 1031
MslI	CAYNNNNRTG	1 cut(s)	837
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	4 cut(s)	625, 649, 1070, 1078
MspI	CCGG	3 cut(s)	379, 457, 1062
MspR9I	CCNGG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	9 cut(s)	625, 652, 661, 742, 745, 748, 877, 1058, 1067
NcoI	CCATGG	1 cut(s)	838
NdeII	GATC	5 cut(s)	22, 52, 297, 1072, 1123
NlaIII	CATG	5 cut(s)	172, 247, 314, 842, 898
NlaIV	GGNNCC	2 cut(s)	455, 1125
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	177, 488
NspI	RCATGY	2 cut(s)	247, 314
PciI	ACATGT	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	335, 803
PflMI	CCANNNNNTGG	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	372
PleI	GAGTC	2 cut(s)	515, 861
PpsI	GAGTC	2 cut(s)	515, 861
PscI	ACATGT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	455, 1125
PspPI	GGNCC	2 cut(s)	376, 817
PsrI	GAACNNNNNNTAC	2 cut(s)	884, 916
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	1123
PvuII	CAGCTG	1 cut(s)	1078
RsaI	GTAC	6 cut(s)	8, 101, 323, 407, 536, 902
RsaNI	GTAC	6 cut(s)	7, 100, 322, 406, 535, 901
RseI	CAYNNNNRTG	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	90, 365, 1031
Sau3AI	GATC	5 cut(s)	22, 52, 297, 1072, 1123
Sau96I	GGNCC	2 cut(s)	376, 817
ScaI	AGTACT	3 cut(s)	8, 101, 323
SchI	GAGTC	2 cut(s)	515, 862
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	243, 725
SetI	ASST	8 cut(s)	285, 407, 434, 480, 587, 999, 1024, 1080
SfaNI	GCATC	2 cut(s)	472, 664
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	376, 817
SmiMI	CAYNNNNRTG	1 cut(s)	837
Sse9I	AATT	4 cut(s)	118, 731, 780, 1042
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	6 cut(s)	95, 230, 290, 422, 905, 955
TaqI	TCGA	1 cut(s)	504
TasI	AATT	4 cut(s)	118, 731, 780, 1042
TatI	WGTACW	5 cut(s)	6, 99, 321, 534, 900
TauI	GCSGC	5 cut(s)	555, 628, 649, 655, 874
TfiI	GAWTC	2 cut(s)	335, 803
Tru1I	TTAA	3 cut(s)	90, 365, 1031
Tru9I	TTAA	3 cut(s)	90, 365, 1031
TscAI	CASTG	5 cut(s)	235, 813, 819, 960, 1062
TseFI	GTSAC	2 cut(s)	177, 488
Tsp45I	GTSAC	2 cut(s)	177, 488
TspDTI	ATGAA	3 cut(s)	157, 659, 936
TspRI	CASTG	5 cut(s)	235, 813, 819, 960, 1062
Van91I	CCANNNNNTGG	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	376, 817
XceI	RCATGY	2 cut(s)	247, 314
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 380
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	293
ZrmI	AGTACT	3 cut(s)	8, 101, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.