AT3G62340
WRKY Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013220
Physical Location & Seq
Reverse (-)
23069489 .. 23071207
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62340.1

Sequence Viewer

Length: 834 bp
ATGGAAAATGTTGGTGTTGGGATGCCGTTTTACGATTTAGGGCAAACAAGGGTTTACCCACTCTTGTCTGATTTCCACGATTTATCGGCGGAGAGGTATCCGGTAGGGTTCATGGATTTACTGGGTGTTCATCGTCATACACCCACCCATACGCCGTTGATGCATTTTCCGACCACACCTAACTCGTCCTCGAGCGAAGCTGTGAATGGAGATGACGAAGAAGAAGAAGATGGAGAAGAACAGCAGCATAAGACAAAGAAGCGGTTTAAATTCACTAAAATGAGTAGAAAGCAGACGAAGAAGAAGGTGCCAAAAGTGTCATTCATCACGAGGAGTGAGGTTCTTCATCTAGATGATGGTTATAAGTGGAGAAAATACGGTCAAAAACCTGTCAAAGACAGCCCTTTTCCAAGAAATTATTACCGTTGCACAACAACTTGGTGTGACGTGAAGAAGAGAGTAGAGAGATCATTCAGTGATCCAAGCAGTGTAATCACCACTTACGAAGGTCAACATACTCATCCTCGTCCACTACTCATCATGCCCAAAGAAGGCAGCTCTCCATCCAATGGCTCAGCTTCTAGGGCCCACATTGGCCTCCCTACACTCCCTCCTCAGCTTTTAGATTACAACAACCAACAACAACAAGCGCCGTCTTCTTTTGGAACCGAGTACATTAACAGGCAAGAAAAAGGAATTAATCATGATGATGATGACGATCATGTTGTGAAGAAGAGTCGAACTCGGGATCTGCTGGATGGAGCTGGTTTAGTCAAAGATCATGGCCTTCTTCAGGATGTTGTTCCCTCTCATATCATTAAGGAAGAGTATTAG

Protein Analysis

277

Amino Acids

31.68

Weight (kDa)

6.93

Isoelectric Point (pI)

61.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 118 - 175 4.7e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62340
fragaria_vesca FvH4_1g26980
malus_domestica MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis pycom17g27580
rosa_chinensis RchiOBHm_Chr3g0487201
rosa_laevigata RLG00000023023
rosa_multiflora Rmu_ssc0000366.1_g000027
rosa_roxburghii Rroxscaffold_6G00395030
rosa_rugosa Rorug03G0232300
rosa_samantha Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana Rw3G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 569
AciI CCGC 2 cut(s) 89, 262
AclWI GGATC 2 cut(s) 473, 756
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 776
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 551, 569, 793
AjiI CACGTC 1 cut(s) 448
AluBI AGCT 5 cut(s) 200, 558, 578, 619, 764
AluI AGCT 5 cut(s) 200, 558, 578, 619, 764
AlwI GGATC 2 cut(s) 473, 756
Ama87I CYCGRG 2 cut(s) 190, 744
AoxI GGCC 3 cut(s) 585, 595, 784
ApaI GGGCCC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 244, 555
ApoI RAATTY 1 cut(s) 269
AseI ATTAAT 1 cut(s) 699
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 585, 586
AsuHPI GGTGA 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 190, 744
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 589
BauI CACGAG 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 256, 567
BccI CCATC 4 cut(s) 224, 350, 571, 752
BceAI ACGGC 3 cut(s) 10, 139, 637
BciVI GTATCC 1 cut(s) 108
BfaI CTAG 2 cut(s) 350, 582
BfoI RGCGCY 1 cut(s) 653
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 2 cut(s) 245, 556
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 2 cut(s) 246, 557
BmeT110I CYCGRG 2 cut(s) 190, 744
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 585, 586
BmiI GGNNCC 3 cut(s) 309, 587, 667
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 12, 150
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 727, 759
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 569, 793
Bse1I ACTGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 717
BseGI GGATG 5 cut(s) 27, 520, 563, 763, 802
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 3 cut(s) 551, 569, 793
BseMII CTCAG 2 cut(s) 588, 629
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 346, 603
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 2 cut(s) 256, 567
BshFI GGCC 3 cut(s) 587, 597, 786
BshNI GGYRCC 1 cut(s) 307
BsiHKCI CYCGRG 2 cut(s) 190, 744
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 551, 569, 793
BsnI GGCC 3 cut(s) 587, 597, 786
BsoBI CYCGRG 2 cut(s) 190, 744
Bsp120I GGGCCC 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 5 cut(s) 467, 478, 718, 748, 778
Bsp1720I GCTNAGC 1 cut(s) 574
BspACI CCGC 2 cut(s) 89, 262
BspANI GGCC 3 cut(s) 587, 597, 786
BspCNI CTCAG 2 cut(s) 587, 628
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 3 cut(s) 309, 587, 667
BspPI GGATC 2 cut(s) 473, 756
BspT107I GGYRCC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 126
BssMI GATC 5 cut(s) 467, 478, 718, 748, 778
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 380, 425
Bst6I CTCTTC 3 cut(s) 449, 728, 819
BstDEI CTNAG 2 cut(s) 574, 615
BstENI CCTNNNNNAGG 1 cut(s) 791
BstF5I GGATG 5 cut(s) 27, 520, 563, 763, 802
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 5 cut(s) 470, 481, 721, 751, 781
BstMBI GATC 5 cut(s) 467, 478, 718, 748, 778
BstMWI GCNNNNNNNGC 2 cut(s) 160, 584
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 256, 567
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 1 cut(s) 748
BstYI RGATCY 1 cut(s) 748
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 3 cut(s) 587, 597, 786
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 5 cut(s) 27, 520, 563, 763, 802
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 481, 493
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 585, 586
Csp6I GTAC 1 cut(s) 673
CviAII CATG 5 cut(s) 112, 541, 704, 722, 782
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 2 cut(s) 574, 615
DpnI GATC 5 cut(s) 469, 480, 720, 750, 780
DpnII GATC 5 cut(s) 467, 478, 718, 748, 778
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 3 cut(s) 449, 728, 819
EarI CTCTTC 3 cut(s) 449, 728, 819
EciI GGCGGA 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 190, 744
EcoNI CCTNNNNNAGG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 589
FaeI CATG 5 cut(s) 115, 544, 707, 725, 785
FatI CATG 5 cut(s) 111, 540, 703, 721, 781
Fnu4HI GCNGC 2 cut(s) 245, 556
FokI GGATG 5 cut(s) 34, 507, 550, 770, 809
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 2 cut(s) 245, 556
FspBI CTAG 2 cut(s) 350, 582
GlaI GCGC 1 cut(s) 651
GluI GCNGC 2 cut(s) 245, 556
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 3 cut(s) 587, 597, 786
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 652
Hin1II CATG 5 cut(s) 115, 544, 707, 725, 785
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HinfI GANTC 1 cut(s) 736
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 55, 512, 530
Hpy188I TCNGA 2 cut(s) 70, 171
Hpy188III TCNNGA 5 cut(s) 328, 350, 704, 746, 794
Hpy8I GTNNAC 3 cut(s) 55, 512, 530
HpyAV CCTTC 4 cut(s) 298, 500, 545, 797
HpyCH4III ACNGT 2 cut(s) 380, 425
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 2 cut(s) 163, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 584
HpyF3I CTNAG 2 cut(s) 574, 615
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 5 cut(s) 115, 544, 707, 725, 785
HspAI GCGC 1 cut(s) 650
Kzo9I GATC 5 cut(s) 467, 478, 718, 748, 778
LmnI GCTCC 1 cut(s) 761
LpnPI CCDG 7 cut(s) 107, 114, 402, 667, 740, 750, 779
Lsp1109I GCAGC 2 cut(s) 256, 567
LweI GCATC 2 cut(s) 12, 150
MaeI CTAG 2 cut(s) 350, 582
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 469, 480, 720, 750, 780
MboI GATC 5 cut(s) 467, 478, 718, 748, 778
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 3 cut(s) 269, 415, 696
MlyI GAGTC 1 cut(s) 745
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 9 cut(s) 87, 199, 324, 331, 534, 608, 621, 624, 817
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 4 cut(s) 267, 678, 699, 819
MslI CAYNNNNRTG 3 cut(s) 278, 351, 708
MspI CCGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 160, 584
NdeII GATC 5 cut(s) 467, 478, 718, 748, 778
NlaIII CATG 5 cut(s) 115, 544, 707, 725, 785
NlaIV GGNNCC 3 cut(s) 309, 587, 667
NmuCI GTSAC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 190
PagI TCATGA 1 cut(s) 703
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 2 cut(s) 246, 557
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
PshBI ATTAAT 1 cut(s) 699
PsiI TTATAA 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 309, 587, 667
PspOMI GGGCCC 1 cut(s) 585
PspPI GGNCC 2 cut(s) 585, 586
PspXI VCTCGAGB 1 cut(s) 190
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 3 cut(s) 278, 351, 708
SaqAI TTAA 4 cut(s) 267, 678, 699, 819
SatI GCNGC 2 cut(s) 245, 556
Sau3AI GATC 5 cut(s) 467, 478, 718, 748, 778
Sau96I GGNCC 2 cut(s) 585, 586
SchI GAGTC 1 cut(s) 745
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 2 cut(s) 12, 150
Sfr274I CTCGAG 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 3 cut(s) 278, 351, 708
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 3 cut(s) 269, 415, 696
SsiI CCGC 2 cut(s) 89, 262
SspMI CTAG 2 cut(s) 350, 582
TaaI ACNGT 2 cut(s) 380, 425
TaiI ACGT 1 cut(s) 450
TaqI TCGA 2 cut(s) 191, 739
TasI AATT 3 cut(s) 269, 415, 696
TatI WGTACW 1 cut(s) 672
Tru1I TTAA 4 cut(s) 267, 678, 699, 819
Tru9I TTAA 4 cut(s) 267, 678, 699, 819
TscAI CASTG 2 cut(s) 481, 493
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 244, 555
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 4 cut(s) 100, 119, 313, 335
TspRI CASTG 2 cut(s) 481, 493
Van91I CCANNNNNTGG 1 cut(s) 569
VspI ATTAAT 1 cut(s) 699
XagI CCTNNNNNAGG 1 cut(s) 791
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 190
XspI CTAG 2 cut(s) 350, 582
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.