Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013220

Physical Location & Seq

Genomic Coordinates Reverse (-)

525815 .. 528034

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G008600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATGTGAAGAAGGATGTGGTAAAGATGGAGGACAATAGTACCAATATTGGATGTGGGTTTTCCTCATCACCATTTTCAGGCATATTTGATTTCTGTGAAGGAGAAAAGAGCTCATCTTTAGGGTTTATGGAGCTTTTGGGTGCTGGCCAGGACTTTTGTACTAACTCCTTGTTTGATTATTTGCCTCAGACACCATCTATGTTGCCTTCATTAGCTCCAAACTTTCCAAAAACTTCCATAATGGCAAAGGAGTGCTCCGACTACTCTTTGAATCAGCAGCCTGCAACACCAAACTCTTCATCGATTTCATCTGCATCCAGTGAGGCTCTGAACGAGGAACAGACTGATAATAAAGGTGCTGCAGACCAAGATGAAGAAGAAGAACATGACCAACCAAAGACCAAGAAAGAGTTGAAAGCGAAGAAGGCAAGTCAGAAGAGACAGAGAGAACCCAGATTTGCATTCATGACCAAGAGTGAGGTTGATCATCTGGAAGATGGCTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTCCCCAGGAGTTACTATCGATGCACAAGTACAGCATGTAATGTGAAGAAGCGAGTGGAGCGATCTTTCAATGACCCAAGCATCGTTGTGACAACTTATGAAGGCCAACACACACACCCAAGCCCACTCATACCTCGCCCAACTCTCACGGCTTCGGCTTCTGCTCAACCCAATATCTCTACCACCTTTGCCATGCCTTCAATGCCCAGAACCCTATTATCTCATCACTATCAACAGCAACTGCAACCTTTCAATTTCTGCAACTATGTTAATGGTGGCTCACCAACAGCAAATGCTAGCGGCACCGGCTTTCATAGCGAAAGGCGGTTTTGCACCCCAGCAACTGGTTCTGCTATGTTGACAGACCATGGGCTTCTTCAAGACATAGTCCCCTCCCATATGCTGAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

322

Amino Acids

35.6

Weight (kDa)

6.51

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62340
fragaria_vesca	FvH4_1g26980
malus_domestica	MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica	Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis	pycom17g27580
rosa_chinensis	RchiOBHm_Chr3g0487201
rosa_laevigata	RLG00000023023
rosa_multiflora	Rmu_ssc0000366.1_g000027
rosa_roxburghii	Rroxscaffold_6G00395030
rosa_rugosa	Rorug03G0232300
rosa_samantha	Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana	Rw3G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	851
AccB7I	CCANNNNNTGG	1 cut(s)	893
AciI	CCGC	2 cut(s)	849, 874
AcoI	YGGCCR	1 cut(s)	148
AfaI	GTAC	4 cut(s)	43, 163, 521, 580
AfiI	CCNNNNNNNGG	3 cut(s)	80, 555, 893
AgsI	TTSAA	6 cut(s)	274, 418, 619, 750, 802, 929
AjnI	CCWGG	2 cut(s)	150, 554
AluBI	AGCT	4 cut(s)	114, 136, 218, 533
AluI	AGCT	4 cut(s)	114, 136, 218, 533
Alw21I	GWGCWC	2 cut(s)	116, 260
Alw26I	GTCTC	1 cut(s)	436
AlwNI	CAGNNNCTG	2 cut(s)	790, 893
AoxI	GGCC	2 cut(s)	148, 652
ApeKI	GCWGC	2 cut(s)	280, 362
AsuHPI	GGTGA	2 cut(s)	63, 822
AsuNHI	GCTAGC	1 cut(s)	845
BaeI	ACNNNNGTAYC	2 cut(s)	25, 58
BalI	TGGCCA	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	116, 260
BbvI	GCAGC	2 cut(s)	292, 349
BccI	CCATC	4 cut(s)	22, 205, 494, 504
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	2 cut(s)	152, 556
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	2 cut(s)	363, 505
BisI	GCNGC	3 cut(s)	281, 363, 850
BlsI	GCNGC	3 cut(s)	282, 364, 851
Bme1390I	CCNGG	2 cut(s)	152, 556
BmiI	GGNNCC	1 cut(s)	853
BmrFI	CCNGG	2 cut(s)	152, 556
BmsI	GCATC	3 cut(s)	326, 560, 639
BmtI	GCTAGC	1 cut(s)	849
Bsa29I	ATCGAT	2 cut(s)	305, 568
BsaJI	CCNNGG	2 cut(s)	554, 916
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 555, 893
Bse118I	RCCGGY	1 cut(s)	854
Bse1I	ACTGG	2 cut(s)	321, 898
BseBI	CCWGG	2 cut(s)	152, 556
BseCI	ATCGAT	2 cut(s)	305, 568
BseDI	CCNNGG	2 cut(s)	554, 916
BseGI	GGATG	4 cut(s)	10, 22, 59, 317
BseLI	CCNNNNNNNGG	3 cut(s)	80, 555, 893
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	321, 898
BseXI	GCAGC	2 cut(s)	292, 349
BseYI	CCCAGC	1 cut(s)	886
BshFI	GGCC	2 cut(s)	150, 654
BshNI	GGYRCC	1 cut(s)	851
BshVI	ATCGAT	2 cut(s)	305, 568
BsiHKAI	GWGCWC	2 cut(s)	116, 260
BsiSI	CCGG	1 cut(s)	855
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	3 cut(s)	80, 555, 893
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	150, 654
Bsp1286I	GDGCHC	2 cut(s)	116, 260
Bsp143I	GATC	2 cut(s)	487, 611
Bsp19I	CCATGG	1 cut(s)	916
BspACI	CCGC	2 cut(s)	849, 874
BspANI	GGCC	2 cut(s)	150, 654
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	2 cut(s)	305, 568
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	853
BspMAI	CTGCAG	1 cut(s)	367
BspOI	GCTAGC	1 cut(s)	849
BspT107I	GGYRCC	1 cut(s)	851
BsrFI	RCCGGY	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	321, 898
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	2 cut(s)	554, 916
BssMI	GATC	2 cut(s)	487, 611
BssT1I	CCWWGG	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	152, 556
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	304, 434
BstC8I	GCNNGC	3 cut(s)	148, 285, 847
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	916
BstENI	CCTNNNNNAGG	1 cut(s)	553
BstF5I	GGATG	4 cut(s)	10, 22, 59, 317
BstKTI	GATC	2 cut(s)	490, 614
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	2 cut(s)	487, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	428, 607, 751, 855, 864
BstNI	CCWGG	2 cut(s)	152, 556
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	150, 554
BstSFI	CTRYAG	2 cut(s)	363, 505
BstV1I	GCAGC	2 cut(s)	292, 349
Bsu15I	ATCGAT	2 cut(s)	305, 568
BsuRI	GGCC	2 cut(s)	150, 654
BsuTUI	ATCGAT	2 cut(s)	305, 568
BtgI	CCRYGG	1 cut(s)	916
BtsCI	GGATG	4 cut(s)	10, 22, 59, 317
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	148, 285, 847
CaiI	CAGNNNCTG	2 cut(s)	790, 893
CciI	TCATGA	1 cut(s)	468
Cfr10I	RCCGGY	1 cut(s)	854
ClaI	ATCGAT	2 cut(s)	305, 568
Csp6I	GTAC	4 cut(s)	42, 162, 520, 579
CviAII	CATG	5 cut(s)	389, 469, 585, 742, 917
CviQI	GTAC	4 cut(s)	42, 162, 520, 579
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	489, 613
DpnII	GATC	2 cut(s)	487, 611
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	304, 434
EarI	CTCTTC	2 cut(s)	304, 434
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	916
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	150, 554
EcoT14I	CCWWGG	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	916
FaeI	CATG	5 cut(s)	392, 472, 588, 745, 920
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	5 cut(s)	388, 468, 584, 741, 916
FauNDI	CATATG	1 cut(s)	948
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	281, 363, 850
FokI	GGATG	4 cut(s)	17, 29, 66, 304
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	281, 363, 850
FspBI	CTAG	1 cut(s)	846
GluI	GCNGC	3 cut(s)	281, 363, 850
GsaI	CCCAGC	1 cut(s)	890
HaeIII	GGCC	2 cut(s)	150, 654
HapII	CCGG	1 cut(s)	855
Hin1II	CATG	5 cut(s)	392, 472, 588, 745, 920
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	2 cut(s)	63, 822
Hpy166II	GTNNAC	1 cut(s)	909
Hpy188I	TCNGA	4 cut(s)	192, 262, 333, 438
Hpy188III	TCNNGA	3 cut(s)	469, 494, 929
Hpy8I	GTNNAC	1 cut(s)	909
HpyAV	CCTTC	7 cut(s)	7, 95, 219, 421, 559, 644, 756
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	8 cut(s)	287, 317, 365, 464, 573, 793, 810, 882
HpyF10VI	GCNNNNNNNGC	5 cut(s)	428, 607, 751, 855, 864
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	392, 472, 588, 745, 920
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	487, 611
LmnI	GCTCC	4 cut(s)	133, 223, 263, 607
Lsp1109I	GCAGC	2 cut(s)	292, 349
LweI	GCATC	3 cut(s)	326, 560, 639
MaeI	CTAG	1 cut(s)	846
MaeIII	GTNAC	2 cut(s)	560, 637
MalI	GATC	2 cut(s)	489, 613
MboI	GATC	2 cut(s)	487, 611
MhlI	GDGCHC	2 cut(s)	116, 260
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	802
MluNI	TGGCCA	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	8 cut(s)	25, 76, 198, 319, 331, 475, 693, 952
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	855
MspR9I	CCNGG	2 cut(s)	152, 556
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	2 cut(s)	152, 556
MwoI	GCNNNNNNNGC	5 cut(s)	428, 607, 751, 855, 864
NcoI	CCATGG	1 cut(s)	916
NdeI	CATATG	1 cut(s)	948
NdeII	GATC	2 cut(s)	487, 611
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	5 cut(s)	392, 472, 588, 745, 920
NlaIV	GGNNCC	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	588
PagI	TCATGA	1 cut(s)	468
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	274
PflFI	GACNNNGTC	1 cut(s)	935
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	282, 364, 851
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	150, 554
PspFI	CCCAGC	1 cut(s)	886
PspGI	CCWGG	2 cut(s)	150, 554
PspN4I	GGNNCC	1 cut(s)	853
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	790, 893
PsyI	GACNNNGTC	1 cut(s)	935
RsaI	GTAC	4 cut(s)	43, 163, 521, 580
RsaNI	GTAC	4 cut(s)	42, 162, 520, 579
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	3 cut(s)	281, 363, 850
Sau3AI	GATC	2 cut(s)	487, 611
ScrFI	CCNGG	2 cut(s)	152, 556
SduI	GDGCHC	2 cut(s)	116, 260
SetI	ASST	9 cut(s)	116, 138, 220, 361, 486, 535, 685, 737, 799
SfaNI	GCATC	3 cut(s)	326, 560, 639
SfcI	CTRYAG	2 cut(s)	363, 505
SmiMI	CAYNNNNRTG	1 cut(s)	635
Sse9I	AATT	1 cut(s)	802
SsiI	CCGC	2 cut(s)	849, 874
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	846
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	150, 554
StyI	CCWWGG	1 cut(s)	916
TaaI	ACNGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	305, 568
TasI	AATT	1 cut(s)	802
TatI	WGTACW	2 cut(s)	161, 578
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	280, 362
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	7 cut(s)	201, 291, 300, 390, 457, 663, 851
TspRI	CASTG	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	935
Van91I	CCANNNNNTGG	1 cut(s)	893
XagI	CCTNNNNNAGG	1 cut(s)	553
XceI	RCATGY	1 cut(s)	588
XspI	CTAG	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.