Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013220

Physical Location & Seq

Genomic Coordinates Forward (+)

25709506 .. 25710948

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAATGTGAAGAAGGATGTGGTGAAGAGGGAGGACAACATTAATAGCAACGATATGAATGGGGGAGGAGGAGGAGGTGGACTTACCACATCACCATTTGCAGGCATGTTTGATTTCTGTGAAGGAGAAAAGAGTTCATCTTTAGGGTTTATGGAACTTTTGGGGGTTGGGGTTGGACAGGACTATTGTCCCACTTCCCTATTTGATTATCTGCCTCAGACACCATCGACAGTCCTGCCTTCATTAGCTTCCACAATGGGAGGAAAAGATCAGTTATCTACTGACTACTCCTCTTTGAATCAGCAGCCTACAACACCAAACTCTTCGTCGATATCGTCAGAATCAAGCGAGGCAGTGAACGAAGAACACACTGATCATAAGGCTGCTACAGACCAAGAGAAAAATAATGAAGAAGAAGAACATGACGAGCAACAAAAGACCAAGAAAGAGTTGAAAGCAAAGAAGGCGAGTCGGAAAAGGCAGAGAGAACCCAGATTTGCATTCATGACAAAGAGCGAAGTTGATCATCTGGAAGATGGCTACAGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAATAGCCCCTTTCCAAGGAGTTACTATCGGTGCACAAGTGCATCATGTAATGTGAAGAAGCGAGTGGAGCGATCTTTCGACGATCCGAGCATTGTTGTAACTACTTATGAAGGACAACACACTCATCGCAGCCCACTCCTGCCTCGCCCGACTCTCCCTGCAGCTTCTGCTTTTCCAGCTAATAACTTTGCCATGCCATTAATCCCGACAAGAACCCTATTTACTCATGACTATCAACAAGTGCAACCATTTGCAGATAGCAACTCCTCTTCGCCTTCATCGGCACCAATTAATTTTGGTGATTATTATGTGAATGGCTCTTCATTGTGTCTTACAAATGCTACTAGTACCGCTGGCTTTCTTCATCCCGAAAGGTGGTTTTGCTCCCCGGCAACCGGTTCTGCTTTGTTAGCTGACCATGGCCTTCTTCAAGACATAGTCCCCTCTCATATGCTGAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

348

Amino Acids

38.26

Weight (kDa)

5.96

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62340
fragaria_vesca	FvH4_1g26980
malus_domestica	MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica	Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis	pycom17g27580
rosa_chinensis	RchiOBHm_Chr3g0487201
rosa_laevigata	RLG00000023023
rosa_multiflora	Rmu_ssc0000366.1_g000027
rosa_roxburghii	Rroxscaffold_6G00395030
rosa_rugosa	Rorug03G0232300
rosa_samantha	Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana	Rw3G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	859
AciI	CCGC	1 cut(s)	927
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	559
AfaI	GTAC	2 cut(s)	557, 925
AfiI	CCNNNNNNNGG	4 cut(s)	101, 591, 951, 971
AgeI	ACCGGT	1 cut(s)	971
AgsI	TTSAA	3 cut(s)	298, 454, 1007
AhlI	ACTAGT	1 cut(s)	920
AluBI	AGCT	5 cut(s)	248, 569, 740, 755, 989
AluI	AGCT	5 cut(s)	248, 569, 740, 755, 989
Alw21I	GWGCWC	1 cut(s)	611
Alw44I	GTGCAC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	653
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	559, 997
ApaLI	GTGCAC	1 cut(s)	607
ApeKI	GCWGC	4 cut(s)	304, 383, 705, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AseI	ATTAAT	3 cut(s)	42, 776, 867
AsiGI	ACCGGT	1 cut(s)	971
AsuC2I	CCSGG	1 cut(s)	965
AsuHPI	GGTGA	3 cut(s)	34, 84, 887
BaeGI	GKGCMC	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	859
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	316, 370, 717, 749
BccI	CCATC	3 cut(s)	232, 530, 540
BceAI	ACGGC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BclI	TGATCA	2 cut(s)	373, 523
BcnI	CCSGG	1 cut(s)	965
BcuI	ACTAGT	1 cut(s)	920
BfaI	CTAG	1 cut(s)	921
BfmI	CTRYAG	3 cut(s)	387, 541, 735
BisI	GCNGC	4 cut(s)	305, 384, 706, 738
BlsI	GCNGC	4 cut(s)	306, 385, 707, 739
Bme1390I	CCNGG	1 cut(s)	965
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	1 cut(s)	965
BmsI	GCATC	1 cut(s)	626
BoxI	GACNNNNGTC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	965
BsaJI	CCNNGG	3 cut(s)	590, 963, 994
BsaWI	WCCGGW	1 cut(s)	971
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 591, 951, 971
Bse118I	RCCGGY	1 cut(s)	971
BseDI	CCNNGG	3 cut(s)	590, 963, 994
BseGI	GGATG	2 cut(s)	22, 940
BseLI	CCNNNNNNNGG	4 cut(s)	101, 591, 951, 971
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	5 cut(s)	81, 84, 87, 280, 832
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	4 cut(s)	316, 370, 717, 749
BshFI	GGCC	2 cut(s)	561, 999
BshNI	GGYRCC	1 cut(s)	859
BshTI	ACCGGT	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	965, 972
BslFI	GGGAC	2 cut(s)	174, 1001
BslI	CCNNNNNNNGG	4 cut(s)	101, 591, 951, 971
BsmFI	GGGAC	2 cut(s)	174, 1001
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	561, 999
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	5 cut(s)	268, 373, 523, 647, 658
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	1 cut(s)	927
BspANI	GGCC	2 cut(s)	561, 999
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	2 cut(s)	504, 802
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	901
BspT107I	GGYRCC	1 cut(s)	859
BsrFI	RCCGGY	1 cut(s)	971
BssAI	RCCGGY	1 cut(s)	971
BssECI	CCNNGG	3 cut(s)	590, 963, 994
BssMI	GATC	5 cut(s)	268, 373, 523, 647, 658
BssT1I	CCWWGG	2 cut(s)	590, 994
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	4 cut(s)	20, 328, 850, 901
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	103, 931
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	994
BstENI	CCTNNNNNAGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	22, 940
BstKTI	GATC	5 cut(s)	271, 376, 526, 650, 661
BstMBI	GATC	5 cut(s)	268, 373, 523, 647, 658
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 643, 743, 752, 986
BstNSI	RCATGY	1 cut(s)	109
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	963
BstSFI	CTRYAG	3 cut(s)	387, 541, 735
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	4 cut(s)	316, 370, 717, 749
BsuRI	GGCC	2 cut(s)	561, 999
BtgI	CCRYGG	1 cut(s)	994
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	2 cut(s)	22, 940
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	360, 369
Cac8I	GCNNGC	2 cut(s)	103, 931
CaiI	CAGNNNCTG	1 cut(s)	743
CciI	TCATGA	2 cut(s)	504, 802
Cfr10I	RCCGGY	1 cut(s)	971
Csp6I	GTAC	2 cut(s)	556, 924
CspAI	ACCGGT	1 cut(s)	971
CviAII	CATG	7 cut(s)	106, 422, 505, 621, 769, 803, 995
CviQI	GTAC	2 cut(s)	556, 924
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	270, 375, 525, 649, 660
DpnII	GATC	5 cut(s)	268, 373, 523, 647, 658
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	4 cut(s)	20, 328, 850, 901
EarI	CTCTTC	4 cut(s)	20, 328, 850, 901
Eco130I	CCWWGG	2 cut(s)	590, 994
Eco32I	GATATC	1 cut(s)	333
EcoNI	CCTNNNNNAGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	590, 994
ErhI	CCWWGG	2 cut(s)	590, 994
FaeI	CATG	7 cut(s)	109, 425, 508, 624, 772, 806, 998
FaqI	GGGAC	2 cut(s)	174, 1001
FatI	CATG	7 cut(s)	105, 421, 504, 620, 768, 802, 994
FauNDI	CATATG	1 cut(s)	1026
FbaI	TGATCA	2 cut(s)	373, 523
Fnu4HI	GCNGC	4 cut(s)	305, 384, 706, 738
FokI	GGATG	2 cut(s)	29, 927
Fsp4HI	GCNGC	4 cut(s)	305, 384, 706, 738
FspBI	CTAG	1 cut(s)	921
GluI	GCNGC	4 cut(s)	305, 384, 706, 738
HaeIII	GGCC	2 cut(s)	561, 999
HapII	CCGG	2 cut(s)	965, 972
Hin1II	CATG	7 cut(s)	109, 425, 508, 624, 772, 806, 998
HinfI	GANTC	4 cut(s)	298, 341, 469, 727
HpaII	CCGG	2 cut(s)	965, 972
HphI	GGTGA	3 cut(s)	34, 84, 887
Hpy166II	GTNNAC	3 cut(s)	80, 358, 609
Hpy188I	TCNGA	4 cut(s)	219, 340, 474, 663
Hpy188III	TCNNGA	6 cut(s)	505, 530, 781, 803, 944, 1007
Hpy8I	GTNNAC	3 cut(s)	80, 358, 609
Hpy99I	CGWCG	2 cut(s)	331, 659
HpyAV	CCTTC	7 cut(s)	7, 116, 249, 457, 680, 861, 1010
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	7 cut(s)	101, 500, 609, 617, 737, 820, 830
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 643, 743, 752, 986
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	7 cut(s)	109, 425, 508, 624, 772, 806, 998
Ksp22I	TGATCA	2 cut(s)	373, 523
Kzo9I	GATC	5 cut(s)	268, 373, 523, 647, 658
LguI	GCTCTTC	1 cut(s)	901
LmnI	GCTCC	2 cut(s)	643, 965
Lsp1109I	GCAGC	4 cut(s)	316, 370, 717, 749
LweI	GCATC	1 cut(s)	626
MaeI	CTAG	1 cut(s)	921
MaeIII	GTNAC	2 cut(s)	596, 673
MalI	GATC	5 cut(s)	270, 375, 525, 649, 660
MboI	GATC	5 cut(s)	268, 373, 523, 647, 658
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	2 cut(s)	864, 868
MlyI	GAGTC	2 cut(s)	478, 721
MmeI	TCCRAC	2 cut(s)	154, 452
MseI	TTAA	3 cut(s)	42, 776, 867
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	2 cut(s)	965, 972
MspR9I	CCNGG	1 cut(s)	965
Mva1269I	GAATGC	1 cut(s)	500
MwoI	GCNNNNNNNGC	5 cut(s)	464, 643, 743, 752, 986
NciI	CCSGG	1 cut(s)	965
NcoI	CCATGG	1 cut(s)	994
NdeI	CATATG	1 cut(s)	1026
NdeII	GATC	5 cut(s)	268, 373, 523, 647, 658
NlaIII	CATG	7 cut(s)	109, 425, 508, 624, 772, 806, 998
NlaIV	GGNNCC	1 cut(s)	861
NspI	RCATGY	1 cut(s)	109
PagI	TCATGA	2 cut(s)	504, 802
PciSI	GCTCTTC	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	298, 341
PflFI	GACNNNGTC	1 cut(s)	1013
PinAI	ACCGGT	1 cut(s)	971
PkrI	GCNGC	4 cut(s)	306, 385, 707, 739
PleI	GAGTC	2 cut(s)	477, 721
PpsI	GAGTC	2 cut(s)	477, 721
PshAI	GACNNNNGTC	1 cut(s)	186
PshBI	ATTAAT	3 cut(s)	42, 776, 867
PspN4I	GGNNCC	1 cut(s)	861
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	1013
RsaI	GTAC	2 cut(s)	557, 925
RsaNI	GTAC	2 cut(s)	556, 924
SapI	GCTCTTC	1 cut(s)	901
SaqAI	TTAA	3 cut(s)	42, 776, 867
SatI	GCNGC	4 cut(s)	305, 384, 706, 738
Sau3AI	GATC	5 cut(s)	268, 373, 523, 647, 658
SchI	GAGTC	2 cut(s)	478, 721
ScrFI	CCNGG	1 cut(s)	965
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	7 cut(s)	79, 250, 571, 742, 757, 953, 991
SfaNI	GCATC	1 cut(s)	626
SfcI	CTRYAG	3 cut(s)	387, 541, 735
SpeI	ACTAGT	1 cut(s)	920
Sse9I	AATT	2 cut(s)	864, 868
SsiI	CCGC	1 cut(s)	927
SspMI	CTAG	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	963
StyI	CCWWGG	2 cut(s)	590, 994
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	227, 329, 654
TasI	AATT	2 cut(s)	864, 868
TfiI	GAWTC	2 cut(s)	298, 341
Tru1I	TTAA	3 cut(s)	42, 776, 867
Tru9I	TTAA	3 cut(s)	42, 776, 867
TscAI	CASTG	2 cut(s)	360, 376
TseI	GCWGC	4 cut(s)	304, 383, 705, 737
TspRI	CASTG	2 cut(s)	360, 376
Tth111I	GACNNNGTC	1 cut(s)	1013
VneI	GTGCAC	1 cut(s)	607
VspI	ATTAAT	3 cut(s)	42, 776, 867
XagI	CCTNNNNNAGG	1 cut(s)	589
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.