Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013220

Physical Location & Seq

Genomic Coordinates Reverse (-)

32645485 .. 32647073

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGAAGAAGGATCATTTGATAAAGATGGAGGGCAATACTAGATCCTCATCATTTTCAGAAACTACAGCTGATTATAGCTACCCATTTCCAGGCATGTTTGATTTCTCTCAAGGCGATCAGAAGGACTCGTTAGGGTTTATGGAGCTTTTGGGTACCCAGGACTTTTGTCCTGCTAATTCCCTCTTTGATTTGCCACAGATCACTACACCACAAGTACTGCCGACTACTTCCATTGATATGGCGAAAGAGTACTCTTTCAATCCTTCAACACCAAACTCCTCATCGATTTCATCCGCCTCAAGTGAAGCTGTGAACGAGGAACCACATACTGATAATAAAGCTGCTGCAGACCAACAAGAAGAAGATAATGGTCATGACCAACCAAAGCCCAAGAAAGGGTTGAAAGCGAATCAGAAGAGGAAGAAGACAACTGAGAAGAAACTAAGAGAGCCGAGATTCGCTTTCATGACAAAGAGTGAGGTTGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGCCAAAAAGCCGTCAAAAACAGCCCTTTCCCAAGGAGCTACTTTCGGTGCACCAGTGCCTCATGTAATGTGAAGAAGCGTGTCGAGCGATGCGTCAGCGATCCAGGCATCGTTGTGACGACCTATGAAGGCCAACATACTCACCTCAGTCCTCTTCTAAGTCCTCTTATGTTGCCTCCTCCTCCTCCTCCTCCTCCAACTACTGCACCGAATAGCATTATCATGCCAAGAACCCTATTCTCCCAGTATCAACAGCAACAAGGACTACGGCCGTTTGCGGATAATCAAGGCTGCAATTTGGGTTTCTCGACACCAAATGGTACAAACTGGAGTTTTCTTAACGAAAGGTGGTTTTGCAGCCCGGCAGGAGGTTCAGCTTTGATGACAGACCATGGCCTTCTTCAAGACATAGTCCCCTCCAATATGTTGAAGCAAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

320

Amino Acids

35.7

Weight (kDa)

7.04

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 222	8.9e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62340
fragaria_vesca	FvH4_1g26980
malus_domestica	MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica	Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis	pycom17g27580
rosa_chinensis	RchiOBHm_Chr3g0487201
rosa_laevigata	RLG00000023023
rosa_multiflora	Rmu_ssc0000366.1_g000027
rosa_roxburghii	Rroxscaffold_6G00395030
rosa_rugosa	Rorug03G0232300
rosa_samantha	Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana	Rw3G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	297, 800
AclWI	GGATC	3 cut(s)	21, 39, 617
AcoI	YGGCCR	2 cut(s)	523, 791
AfaI	GTAC	5 cut(s)	157, 219, 254, 521, 844
AfiI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 890
AgsI	TTSAA	5 cut(s)	262, 270, 406, 926, 952
AjnI	CCWGG	3 cut(s)	91, 159, 625
AluBI	AGCT	7 cut(s)	71, 81, 148, 311, 344, 561, 899
AluI	AGCT	7 cut(s)	71, 81, 148, 311, 344, 561, 899
Alw21I	GWGCWC	1 cut(s)	575
Alw44I	GTGCAC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	21, 39, 617
AoxI	GGCC	4 cut(s)	523, 652, 791, 916
ApaLI	GTGCAC	1 cut(s)	571
ApeKI	GCWGC	4 cut(s)	344, 347, 813, 879
Asp718I	GGTACC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	331, 334, 800, 891
BccI	CCATC	3 cut(s)	22, 494, 504
BceAI	ACGGC	4 cut(s)	518, 538, 778, 806
BciT130I	CCWGG	3 cut(s)	93, 161, 627
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	884
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	66, 348
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	4 cut(s)	345, 348, 814, 880
BlsI	GCNGC	4 cut(s)	346, 349, 815, 881
BmcAI	AGTACT	2 cut(s)	219, 254
Bme1390I	CCNGG	4 cut(s)	93, 161, 627, 884
BmiI	GGNNCC	2 cut(s)	157, 324
BmrFI	CCNGG	4 cut(s)	93, 161, 627, 884
BmrI	ACTGGG	1 cut(s)	760
BmsI	GCATC	2 cut(s)	602, 639
BmuI	ACTGGG	1 cut(s)	760
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	1 cut(s)	871
BpuEI	CTTGAG	2 cut(s)	96, 286
BpuMI	CCSGG	1 cut(s)	884
Bsa29I	ATCGAT	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	159, 554, 913
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 890
Bse1I	ACTGG	3 cut(s)	576, 766, 854
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	3 cut(s)	93, 161, 627
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	159, 554, 913
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 890
BseMII	CTCAG	2 cut(s)	426, 682
BseNI	ACTGG	3 cut(s)	576, 766, 854
BseRI	GAGGAG	7 cut(s)	271, 690, 693, 696, 699, 702, 705
BseSI	GKGCMC	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	791
BseXI	GCAGC	4 cut(s)	331, 334, 800, 891
BsgI	GTGCAG	1 cut(s)	711
Bsh1285I	CGRYCG	1 cut(s)	794
BshFI	GGCC	4 cut(s)	525, 654, 793, 918
BshNI	GGYRCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	884
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 890
BsmFI	GGGAC	1 cut(s)	920
BsnI	GGCC	4 cut(s)	525, 654, 793, 918
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
Bsp19I	CCATGG	1 cut(s)	913
BspACI	CCGC	2 cut(s)	297, 800
BspANI	GGCC	4 cut(s)	525, 654, 793, 918
BspCNI	CTCAG	2 cut(s)	427, 681
BspDI	ATCGAT	1 cut(s)	287
BspHI	TCATGA	2 cut(s)	376, 468
BspLI	GGNNCC	2 cut(s)	157, 324
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	3 cut(s)	21, 39, 617
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	3 cut(s)	576, 766, 854
BssECI	CCNNGG	3 cut(s)	159, 554, 913
BssMI	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
BssT1I	CCWWGG	2 cut(s)	554, 913
Bst2UI	CCWGG	3 cut(s)	93, 161, 627
Bst6I	CTCTTC	2 cut(s)	413, 681
BstDEI	CTNAG	4 cut(s)	435, 446, 668, 680
BstDSI	CCRYGG	1 cut(s)	913
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	6 cut(s)	16, 47, 121, 204, 490, 625
BstMBI	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
BstMCI	CGRYCG	1 cut(s)	794
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 627
BstNI	CCWGG	3 cut(s)	93, 161, 627
BstNSI	RCATGY	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	4 cut(s)	91, 159, 625, 882
BstSFI	CTRYAG	2 cut(s)	66, 348
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	4 cut(s)	331, 334, 800, 891
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	791
Bsu15I	ATCGAT	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	4 cut(s)	525, 654, 793, 918
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	913
BtgZI	GCGATG	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	583
CciI	TCATGA	2 cut(s)	376, 468
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	5 cut(s)	156, 218, 253, 520, 843
CviAII	CATG	6 cut(s)	97, 377, 469, 585, 745, 914
CviQI	GTAC	5 cut(s)	156, 218, 253, 520, 843
DdeI	CTNAG	4 cut(s)	435, 446, 668, 680
DpnI	GATC	6 cut(s)	15, 46, 120, 203, 489, 624
DpnII	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
EaeI	YGGCCR	2 cut(s)	523, 791
EagI	CGGCCG	1 cut(s)	791
Eam1104I	CTCTTC	2 cut(s)	413, 681
EarI	CTCTTC	2 cut(s)	413, 681
EciI	GGCGGA	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	554, 913
Eco52I	CGGCCG	1 cut(s)	791
EcoRII	CCWGG	3 cut(s)	91, 159, 625
EcoT14I	CCWWGG	2 cut(s)	554, 913
ErhI	CCWWGG	2 cut(s)	554, 913
FaeI	CATG	6 cut(s)	100, 380, 472, 588, 748, 917
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	6 cut(s)	96, 376, 468, 584, 744, 913
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	4 cut(s)	345, 348, 814, 880
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	4 cut(s)	345, 348, 814, 880
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	4 cut(s)	345, 348, 814, 880
GsuI	CTGGAG	1 cut(s)	871
HaeIII	GGCC	4 cut(s)	525, 654, 793, 918
HapII	CCGG	1 cut(s)	884
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	100, 380, 472, 588, 748, 917
HinfI	GANTC	3 cut(s)	128, 412, 459
HpaII	CCGG	1 cut(s)	884
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	316, 573
Hpy188I	TCNGA	3 cut(s)	61, 123, 417
Hpy188III	TCNNGA	5 cut(s)	377, 469, 494, 829, 926
Hpy8I	GTNNAC	2 cut(s)	316, 573
HpyAV	CCTTC	5 cut(s)	4, 118, 276, 644, 929
HpyCH4V	TGCA	5 cut(s)	350, 573, 728, 816, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 627
HpyF3I	CTNAG	4 cut(s)	435, 446, 668, 680
Hsp92II	CATG	6 cut(s)	100, 380, 472, 588, 748, 917
KpnI	GGTACC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
LmnI	GCTCC	2 cut(s)	145, 558
Lsp1109I	GCAGC	4 cut(s)	331, 334, 800, 891
LweI	GCATC	2 cut(s)	602, 639
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	6 cut(s)	15, 46, 120, 203, 489, 624
MboI	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	2 cut(s)	178, 817
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	743
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	3 cut(s)	239, 635, 743
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	884
MspR9I	CCNGG	4 cut(s)	93, 161, 627, 884
MvaI	CCWGG	3 cut(s)	93, 161, 627
MwoI	GCNNNNNNNGC	2 cut(s)	607, 627
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	913
NdeII	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
NlaIII	CATG	6 cut(s)	100, 380, 472, 588, 748, 917
NlaIV	GGNNCC	2 cut(s)	157, 324
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	2 cut(s)	376, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	412, 459
PflFI	GACNNNGTC	1 cut(s)	932
PkrI	GCNGC	4 cut(s)	346, 349, 815, 881
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	91, 159, 625
PspGI	CCWGG	3 cut(s)	91, 159, 625
PspN4I	GGNNCC	2 cut(s)	157, 324
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	932
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	5 cut(s)	157, 219, 254, 521, 844
RsaNI	GTAC	5 cut(s)	156, 218, 253, 520, 843
RseI	CAYNNNNRTG	3 cut(s)	239, 635, 743
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	4 cut(s)	345, 348, 814, 880
Sau3AI	GATC	6 cut(s)	13, 44, 118, 201, 487, 622
ScaI	AGTACT	2 cut(s)	219, 254
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	93, 161, 627, 884
SduI	GDGCHC	1 cut(s)	575
SfaNI	GCATC	2 cut(s)	602, 639
SfcI	CTRYAG	2 cut(s)	66, 348
SmiMI	CAYNNNNRTG	3 cut(s)	239, 635, 743
SmlI	CTYRAG	2 cut(s)	111, 301
SmoI	CTYRAG	2 cut(s)	111, 301
Sse9I	AATT	2 cut(s)	178, 817
SsiI	CCGC	2 cut(s)	297, 800
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	91, 159, 625, 882
StyI	CCWWGG	2 cut(s)	554, 913
TaqI	TCGA	3 cut(s)	287, 606, 830
TasI	AATT	2 cut(s)	178, 817
TatI	WGTACW	2 cut(s)	217, 252
TfiI	GAWTC	2 cut(s)	412, 459
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	4 cut(s)	344, 347, 813, 879
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	282, 457, 663
TspRI	CASTG	1 cut(s)	583
Tth111I	GACNNNGTC	1 cut(s)	932
VneI	GTGCAC	1 cut(s)	571
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	2 cut(s)	219, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.