FvH4_1g26980
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013220
Physical Location & Seq
Reverse (-)
18766960 .. 18769036
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26980.t1

Sequence Viewer

Length: 954 bp
ATGGAGAAGCAGGATCACTTGATGAAGATGGAGGGCAATACTAGATCCTCATCATTTCACGAAACTACAGCAGACTATAGCTACCCATTTTCAGGCATGTTTGATTTCTCTCAAGGCGATCAGAAGGACTCGTTAGGGTTTATGGAGCTTTTGGGTATCCAGGACTACTTTTGTCCTGCTAATTCCCTCTTTGATTTGCCACAGATCAGTGTACCACCACCACAAGTACTACTGCCGACCACTTCCATTACTGATGTGGCAAAAGAGTACTCTGTCAATCCTTCTACGCCAAACTCCTCATCGATTTCATCCGCTTCAAGTGAAGCTGTGAACGAGGAACCACTCACTGATAACAAAGCTGCTGCTCTGCAGCAGGAAGAAGATGATGATGGCGACCAACCAGTGCCCAAGAAAGGGTCGAAAGCGAATCAGAAGAGGAAGAAGACAACTGAGAAGAAACCAAGACAGCCAAGATTCGCCTTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGCCAAAAAGCCGTCAAAAACAGCCCTTTCCCCAGGAGCTACTTTCGGTGCACCAGTGCCTCATGTAATGTGAAGAAGCGAGTGGAGCGATGCGTCAATGATCCAAGCATCGTTGTGACGACCTATGAAGGCCAACATACTCATCTAAGTCCTCTTATGAGCCCTCCTCCTCCACCAGCTACTGCACTGAGTAGCATTCTCATGCCAAGAACCCTATTCTCCCACTATCAACAGCAACAAGGACTGCAGCCATTTGAGGGTAATCAGACCAGCAATTCGTGTTTCGCGACACCAAACCGGAGTTTTCTTAACGAGAGGCGGTTTTGCAGCCCCGCTGGAGGTTCAGCTCTCATGACAGACCATGGCCTTCTTCAAGACATAGTCCCCTCCAGTATGTTGAAGCAAGTAGATAGATAG

Protein Analysis

318

Amino Acids

35.38

Weight (kDa)

6.66

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 171 - 227 1.7e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62340
fragaria_vesca FvH4_1g26980
malus_domestica MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis pycom17g27580
rosa_chinensis RchiOBHm_Chr3g0487201
rosa_laevigata RLG00000023023
rosa_multiflora Rmu_ssc0000366.1_g000027
rosa_roxburghii Rroxscaffold_6G00395030
rosa_rugosa Rorug03G0232300
rosa_samantha Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana Rw3G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 824
AciI CCGC 3 cut(s) 312, 856, 870
AclWI GGATC 3 cut(s) 21, 39, 632
AcoI YGGCCR 1 cut(s) 538
AfaI GTAC 4 cut(s) 213, 228, 269, 536
AfiI CCNNNNNNNGG 5 cut(s) 92, 413, 414, 794, 875
AgsI TTSAA 3 cut(s) 318, 911, 937
AjnI CCWGG 2 cut(s) 159, 569
AluBI AGCT 7 cut(s) 81, 148, 326, 359, 576, 716, 884
AluI AGCT 7 cut(s) 81, 148, 326, 359, 576, 716, 884
Alw21I GWGCWC 1 cut(s) 590
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 3 cut(s) 21, 39, 632
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 3 cut(s) 538, 667, 901
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 5 cut(s) 359, 362, 370, 784, 864
ArsI GACNNNNNNTTYG 2 cut(s) 796, 828
BaeGI GKGCMC 2 cut(s) 408, 590
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 5 cut(s) 346, 349, 382, 796, 876
BccI CCATC 4 cut(s) 22, 383, 509, 519
BceAI ACGGC 2 cut(s) 533, 553
BciT130I CCWGG 2 cut(s) 161, 571
BciVI GTATCC 2 cut(s) 167, 512
BclI TGATCA 1 cut(s) 502
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 4 cut(s) 66, 76, 368, 782
BfuI GTATCC 2 cut(s) 167, 512
BisI GCNGC 5 cut(s) 360, 363, 371, 785, 865
BlsI GCNGC 5 cut(s) 361, 364, 372, 786, 866
BmcAI AGTACT 2 cut(s) 228, 269
Bme1390I CCNGG 2 cut(s) 161, 571
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 161, 571
BmsI GCATC 2 cut(s) 617, 654
BpiI GAAGAC 1 cut(s) 449
BplI GAGNNNNNCTC 2 cut(s) 688, 720
BpmI CTGGAG 2 cut(s) 894, 910
BpuEI CTTGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 569, 898
BsaWI WCCGGW 1 cut(s) 834
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 413, 414, 794, 875
Bse1I ACTGG 3 cut(s) 401, 591, 927
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 2 cut(s) 161, 571
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 569, 898
BseGI GGATG 1 cut(s) 308
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 5 cut(s) 92, 413, 414, 794, 875
BseMII CTCAG 2 cut(s) 441, 716
BseNI ACTGG 3 cut(s) 401, 591, 927
BseRI GAGGAG 3 cut(s) 286, 693, 696
BseSI GKGCMC 2 cut(s) 408, 590
BseXI GCAGC 5 cut(s) 346, 349, 382, 796, 876
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 1 cut(s) 824
BshFI GGCC 3 cut(s) 540, 669, 903
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 1 cut(s) 835
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 5 cut(s) 92, 413, 414, 794, 875
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 732
BsnI GGCC 3 cut(s) 540, 669, 903
Bsp1286I GDGCHC 3 cut(s) 408, 590, 701
Bsp143I GATC 6 cut(s) 13, 44, 118, 204, 502, 637
Bsp19I CCATGG 1 cut(s) 898
Bsp68I TCGCGA 1 cut(s) 824
BspACI CCGC 3 cut(s) 312, 856, 870
BspANI GGCC 3 cut(s) 540, 669, 903
BspCNI CTCAG 2 cut(s) 442, 717
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 1 cut(s) 824
BspHI TCATGA 2 cut(s) 483, 888
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 2 cut(s) 372, 786
BspPI GGATC 3 cut(s) 21, 39, 632
BsrI ACTGG 3 cut(s) 401, 591, 927
BssECI CCNNGG 2 cut(s) 569, 898
BssMI GATC 6 cut(s) 13, 44, 118, 204, 502, 637
BssT1I CCWWGG 1 cut(s) 898
Bst2UI CCWGG 2 cut(s) 161, 571
Bst6I CTCTTC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 450, 683, 725
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 824
BstKTI GATC 6 cut(s) 16, 47, 121, 207, 505, 640
BstMBI GATC 6 cut(s) 13, 44, 118, 204, 502, 637
BstMWI GCNNNNNNNGC 1 cut(s) 622
BstNI CCWGG 2 cut(s) 161, 571
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 159, 569
BstSFI CTRYAG 4 cut(s) 66, 76, 368, 782
BstSLI GKGCMC 2 cut(s) 408, 590
BstUI CGCG 1 cut(s) 824
BstV1I GCAGC 5 cut(s) 346, 349, 382, 796, 876
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 302
BsuI GTATCC 2 cut(s) 167, 512
BsuRI GGCC 3 cut(s) 540, 669, 903
BsuTUI ATCGAT 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 898
BtgZI GCGATG 1 cut(s) 640
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 5 cut(s) 214, 345, 408, 598, 722
BtuMI TCGCGA 1 cut(s) 824
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 2 cut(s) 483, 888
ClaI ATCGAT 1 cut(s) 302
CseI GACGC 1 cut(s) 619
Csp6I GTAC 4 cut(s) 212, 227, 268, 535
CviAII CATG 6 cut(s) 97, 484, 600, 739, 889, 899
CviQI GTAC 4 cut(s) 212, 227, 268, 535
DdeI CTNAG 3 cut(s) 450, 683, 725
DpnI GATC 6 cut(s) 15, 46, 120, 206, 504, 639
DpnII GATC 6 cut(s) 13, 44, 118, 204, 502, 637
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 159, 569
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 6 cut(s) 100, 487, 603, 742, 892, 902
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 96, 483, 599, 738, 888, 898
FauI CCCGC 1 cut(s) 877
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 5 cut(s) 360, 363, 371, 785, 865
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 5 cut(s) 360, 363, 371, 785, 865
FspBI CTAG 1 cut(s) 42
GluI GCNGC 5 cut(s) 360, 363, 371, 785, 865
GsuI CTGGAG 2 cut(s) 894, 910
HaeIII GGCC 3 cut(s) 540, 669, 903
HapII CCGG 1 cut(s) 835
HgaI GACGC 1 cut(s) 619
Hin1II CATG 6 cut(s) 100, 487, 603, 742, 892, 902
HinfI GANTC 3 cut(s) 128, 427, 474
HpaII CCGG 1 cut(s) 835
Hpy166II GTNNAC 3 cut(s) 212, 331, 588
Hpy188I TCNGA 3 cut(s) 123, 432, 804
Hpy188III TCNNGA 6 cut(s) 59, 484, 509, 823, 889, 911
Hpy8I GTNNAC 3 cut(s) 212, 331, 588
HpyAV CCTTC 5 cut(s) 118, 291, 490, 659, 914
HpyCH4V TGCA 5 cut(s) 370, 588, 722, 784, 864
HpyF10VI GCNNNNNNNGC 1 cut(s) 622
HpyF3I CTNAG 3 cut(s) 450, 683, 725
Hsp92II CATG 6 cut(s) 100, 487, 603, 742, 892, 902
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 6 cut(s) 13, 44, 118, 204, 502, 637
LmnI GCTCC 3 cut(s) 145, 573, 622
Lsp1109I GCAGC 5 cut(s) 346, 349, 382, 796, 876
LweI GCATC 2 cut(s) 617, 654
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 652
MalI GATC 6 cut(s) 15, 46, 120, 206, 504, 639
MboI GATC 6 cut(s) 13, 44, 118, 204, 502, 637
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 3 cut(s) 408, 590, 701
MluCI AATT 2 cut(s) 181, 811
MlyI GAGTC 1 cut(s) 122
MseI TTAA 1 cut(s) 846
MslI CAYNNNNRTG 2 cut(s) 650, 737
MspA1I CMGCKG 1 cut(s) 872
MspI CCGG 1 cut(s) 835
MspR9I CCNGG 2 cut(s) 161, 571
Mva1269I GAATGC 1 cut(s) 732
MvaI CCWGG 2 cut(s) 161, 571
MvnI CGCG 1 cut(s) 824
MwoI GCNNNNNNNGC 1 cut(s) 622
NcoI CCATGG 1 cut(s) 898
NdeII GATC 6 cut(s) 13, 44, 118, 204, 502, 637
NlaIII CATG 6 cut(s) 100, 487, 603, 742, 892, 902
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 652
NruI TCGCGA 1 cut(s) 824
NspI RCATGY 1 cut(s) 100
PagI TCATGA 2 cut(s) 483, 888
PcsI WCGNNNNNNNCGW 1 cut(s) 821
PctI GAATGC 1 cut(s) 732
PfeI GAWTC 2 cut(s) 427, 474
PflFI GACNNNGTC 1 cut(s) 917
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 5 cut(s) 361, 364, 372, 786, 866
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 159, 569
PspGI CCWGG 2 cut(s) 159, 569
PspN4I GGNNCC 1 cut(s) 339
PstI CTGCAG 2 cut(s) 372, 786
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 917
RruI TCGCGA 1 cut(s) 824
RsaI GTAC 4 cut(s) 213, 228, 269, 536
RsaNI GTAC 4 cut(s) 212, 227, 268, 535
RseI CAYNNNNRTG 2 cut(s) 650, 737
SaqAI TTAA 1 cut(s) 846
SatI GCNGC 5 cut(s) 360, 363, 371, 785, 865
Sau3AI GATC 6 cut(s) 13, 44, 118, 204, 502, 637
ScaI AGTACT 2 cut(s) 228, 269
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 161, 571
SduI GDGCHC 3 cut(s) 408, 590, 701
SfaNI GCATC 2 cut(s) 617, 654
SfcI CTRYAG 4 cut(s) 66, 76, 368, 782
SmiMI CAYNNNNRTG 2 cut(s) 650, 737
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 2 cut(s) 181, 811
SsiI CCGC 3 cut(s) 312, 856, 870
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 159, 569
StyI CCWWGG 1 cut(s) 898
TaqI TCGA 2 cut(s) 302, 419
TasI AATT 2 cut(s) 181, 811
TatI WGTACW 2 cut(s) 226, 267
TfiI GAWTC 2 cut(s) 427, 474
Tru1I TTAA 1 cut(s) 846
Tru9I TTAA 1 cut(s) 846
TscAI CASTG 5 cut(s) 214, 352, 408, 598, 729
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 5 cut(s) 359, 362, 370, 784, 864
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 4 cut(s) 38, 297, 472, 678
TspRI CASTG 5 cut(s) 214, 352, 408, 598, 729
Tth111I GACNNNGTC 1 cut(s) 917
VneI GTGCAC 1 cut(s) 586
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 2 cut(s) 228, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.