Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000366.1

Orthogroup ID

OG0013220

Physical Location & Seq

Genomic Coordinates Forward (+)

116497 .. 117773

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000366.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggagaagaaggatcatttgataaagatggagggaaatactagatcctcatcattttcagtaactacagctgattatagctacccatttccaggcatgtttgatttctctcaaggcgaacagaaggactcgttagggtttatggagcttttgggtatccaggacttttgtcctgctaattccctctttgatttgccacagatcactacaccacaagtactgccgactacttccattgatatggcgaaagagtactctttcaatccttcaacaccaaactcctcatcgatttcatccgcttcaagtgaagctgtgaacgaggaaccacatactgataaaaaagctgctgcagacctacaagaagaagatgatggtcatgaccaaccagagcccaagaaagggttgaaagcgaatcagaagaggaagaagacaactgagaagaaactaagagagccgagattcgctttcatgacaaagagtgaggttgatcatctggaagatggatacagatggagaaagtacggccaaaaagccgtcaaaaacagccctttccccaggagctactttcggtgcaccagtgcctcatgtaatgtgaagaagcgtgtcgagcgatgcgtcaacgatccaggcatcgttgtgacgacctatgaaggccaacatactcacctaagtcctcttatgttgcctcttcctcctcctcctcctccaactactgcaccgaatagcattatcatgccaagaaccctattctcccagtatcaacagcaacaaggactacggccgtttgcggataatcaaggttgcaatttgggtttctcgacaccaaatggtacaaaccggagttttcttaacgaaaggtgtttttgcagcccggcaggaggttcagctttgatgacagaccatggccttcttcaagacatagtcccctccaatatgttgaagcaagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

316

Amino Acids

35.21

Weight (kDa)

7.04

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62340
fragaria_vesca	FvH4_1g26980
malus_domestica	MD09G1285400.v1.1 MD17G1278100.v1.1
prunus_persica	Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1 Prupe.3G008600_v2.0.a1
pyrus_communis	pycom17g27580
rosa_chinensis	RchiOBHm_Chr3g0487201
rosa_laevigata	RLG00000023023
rosa_multiflora	Rmu_ssc0000366.1_g000027
rosa_roxburghii	Rroxscaffold_6G00395030
rosa_rugosa	Rorug03G0232300
rosa_samantha	Rh3AG280200 Rh3BG316200 Rh3CG314300 Rh3DG311600
rosa_wichuraiana	Rw3G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	297, 788
AclWI	GGATC	3 cut(s)	21, 39, 617
AcoI	YGGCCR	2 cut(s)	523, 779
AfaI	GTAC	4 cut(s)	219, 254, 521, 832
AfiI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 878
AgsI	TTSAA	6 cut(s)	262, 270, 303, 406, 914, 940
AjnI	CCWGG	4 cut(s)	91, 159, 554, 625
AluBI	AGCT	7 cut(s)	71, 81, 148, 311, 344, 561, 887
AluI	AGCT	7 cut(s)	71, 81, 148, 311, 344, 561, 887
Alw21I	GWGCWC	1 cut(s)	575
Alw44I	GTGCAC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	21, 39, 617
AoxI	GGCC	4 cut(s)	523, 652, 779, 904
ApaLI	GTGCAC	1 cut(s)	571
ApeKI	GCWGC	3 cut(s)	344, 347, 867
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	331, 334, 879
BccI	CCATC	4 cut(s)	22, 365, 494, 504
BceAI	ACGGC	4 cut(s)	518, 538, 766, 794
BciT130I	CCWGG	4 cut(s)	93, 161, 556, 627
BciVI	GTATCC	2 cut(s)	167, 497
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	872
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	66, 348
BfuI	GTATCC	2 cut(s)	167, 497
BisI	GCNGC	3 cut(s)	345, 348, 868
BlsI	GCNGC	3 cut(s)	346, 349, 869
BmcAI	AGTACT	2 cut(s)	219, 254
Bme1390I	CCNGG	5 cut(s)	93, 161, 556, 627, 872
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	5 cut(s)	93, 161, 556, 627, 872
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	2 cut(s)	602, 639
BmuI	ACTGGG	1 cut(s)	748
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	872
Bsa29I	ATCGAT	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	554, 901
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 878
Bse1I	ACTGG	2 cut(s)	576, 754
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	4 cut(s)	93, 161, 556, 627
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	554, 901
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 878
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	576, 754
BseRI	GAGGAG	5 cut(s)	271, 684, 687, 690, 693
BseSI	GKGCMC	1 cut(s)	575
BseX3I	CGGCCG	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	331, 334, 879
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	4 cut(s)	525, 654, 781, 906
BshVI	ATCGAT	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	838, 872
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	4 cut(s)	92, 398, 399, 878
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	4 cut(s)	525, 654, 781, 906
Bsp1286I	GDGCHC	2 cut(s)	393, 575
Bsp143I	GATC	5 cut(s)	13, 44, 201, 487, 622
Bsp19I	CCATGG	1 cut(s)	901
BspACI	CCGC	2 cut(s)	297, 788
BspANI	GGCC	4 cut(s)	525, 654, 781, 906
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	287
BspHI	TCATGA	2 cut(s)	376, 468
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	3 cut(s)	21, 39, 617
BsrI	ACTGG	2 cut(s)	576, 754
BssECI	CCNNGG	2 cut(s)	554, 901
BssMI	GATC	5 cut(s)	13, 44, 201, 487, 622
BssT1I	CCWWGG	1 cut(s)	901
Bst2UI	CCWGG	4 cut(s)	93, 161, 556, 627
Bst6I	CTCTTC	2 cut(s)	413, 693
BstDEI	CTNAG	3 cut(s)	435, 446, 668
BstDSI	CCRYGG	1 cut(s)	901
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	5 cut(s)	16, 47, 204, 490, 625
BstMBI	GATC	5 cut(s)	13, 44, 201, 487, 622
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	4 cut(s)	93, 161, 556, 627
BstNSI	RCATGY	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	5 cut(s)	91, 159, 554, 625, 870
BstSFI	CTRYAG	2 cut(s)	66, 348
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	331, 334, 879
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	779
Bsu15I	ATCGAT	1 cut(s)	287
BsuI	GTATCC	2 cut(s)	167, 497
BsuRI	GGCC	4 cut(s)	525, 654, 781, 906
BsuTUI	ATCGAT	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	901
BtgZI	GCGATG	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	583
CciI	TCATGA	2 cut(s)	376, 468
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	4 cut(s)	218, 253, 520, 831
CviAII	CATG	6 cut(s)	97, 377, 469, 585, 733, 902
CviQI	GTAC	4 cut(s)	218, 253, 520, 831
DdeI	CTNAG	3 cut(s)	435, 446, 668
DpnI	GATC	5 cut(s)	15, 46, 203, 489, 624
DpnII	GATC	5 cut(s)	13, 44, 201, 487, 622
EaeI	YGGCCR	2 cut(s)	523, 779
EagI	CGGCCG	1 cut(s)	779
Eam1104I	CTCTTC	2 cut(s)	413, 693
EarI	CTCTTC	2 cut(s)	413, 693
EclXI	CGGCCG	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	901
Eco24I	GRGCYC	1 cut(s)	393
Eco52I	CGGCCG	1 cut(s)	779
EcoRII	CCWGG	4 cut(s)	91, 159, 554, 625
EcoT14I	CCWWGG	1 cut(s)	901
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	901
FaeI	CATG	6 cut(s)	100, 380, 472, 588, 736, 905
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	6 cut(s)	96, 376, 468, 584, 732, 901
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	345, 348, 868
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	345, 348, 868
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	3 cut(s)	345, 348, 868
HaeIII	GGCC	4 cut(s)	525, 654, 781, 906
HapII	CCGG	2 cut(s)	838, 872
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	100, 380, 472, 588, 736, 905
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	3 cut(s)	128, 412, 459
HpaII	CCGG	2 cut(s)	838, 872
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	316, 573, 619
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	5 cut(s)	377, 469, 494, 817, 914
Hpy8I	GTNNAC	3 cut(s)	316, 573, 619
HpyAV	CCTTC	5 cut(s)	4, 118, 276, 644, 917
HpyCH4V	TGCA	5 cut(s)	350, 573, 716, 804, 867
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	3 cut(s)	435, 446, 668
Hsp92II	CATG	6 cut(s)	100, 380, 472, 588, 736, 905
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	13, 44, 201, 487, 622
LmnI	GCTCC	2 cut(s)	145, 558
Lsp1109I	GCAGC	3 cut(s)	331, 334, 879
LweI	GCATC	2 cut(s)	602, 639
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	61, 637
MalI	GATC	5 cut(s)	15, 46, 203, 489, 624
MboI	GATC	5 cut(s)	13, 44, 201, 487, 622
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	393, 575
MluCI	AATT	2 cut(s)	178, 805
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	731
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	3 cut(s)	239, 635, 731
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	838, 872
MspR9I	CCNGG	5 cut(s)	93, 161, 556, 627, 872
MvaI	CCWGG	4 cut(s)	93, 161, 556, 627
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	1 cut(s)	901
NdeII	GATC	5 cut(s)	13, 44, 201, 487, 622
NlaIII	CATG	6 cut(s)	100, 380, 472, 588, 736, 905
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	2 cut(s)	376, 468
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	412, 459
PflFI	GACNNNGTC	1 cut(s)	920
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	346, 349, 869
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	91, 159, 554, 625
PspGI	CCWGG	4 cut(s)	91, 159, 554, 625
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	4 cut(s)	219, 254, 521, 832
RsaNI	GTAC	4 cut(s)	218, 253, 520, 831
RseI	CAYNNNNRTG	3 cut(s)	239, 635, 731
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	3 cut(s)	345, 348, 868
Sau3AI	GATC	5 cut(s)	13, 44, 201, 487, 622
ScaI	AGTACT	2 cut(s)	219, 254
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	5 cut(s)	93, 161, 556, 627, 872
SduI	GDGCHC	2 cut(s)	393, 575
SfaNI	GCATC	2 cut(s)	602, 639
SfcI	CTRYAG	2 cut(s)	66, 348
SmiMI	CAYNNNNRTG	3 cut(s)	239, 635, 731
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	178, 805
SsiI	CCGC	2 cut(s)	297, 788
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	5 cut(s)	91, 159, 554, 625, 870
StyI	CCWWGG	1 cut(s)	901
TaqI	TCGA	3 cut(s)	287, 606, 818
TasI	AATT	2 cut(s)	178, 805
TatI	WGTACW	2 cut(s)	217, 252
TfiI	GAWTC	2 cut(s)	412, 459
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	344, 347, 867
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	282, 457, 663
TspRI	CASTG	1 cut(s)	583
Tth111I	GACNNNGTC	1 cut(s)	920
VneI	GTGCAC	1 cut(s)	571
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	2 cut(s)	219, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.