Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

23444203 .. 23446355

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTGCTTGCGCTACTCACTCCTCTCTCATGCTAGCATACGCCGCCGCATCCACTCGTTCCCAGGACCTTACCCCTACTCCATCTCTTTTCTCTTTTGCCAGCTCCAGACCCAACCACTTGAGCTTCCCGCTTCTTCTCCTTGGGGGTTCCAGGGACCGGAGATGTGCTGCTATTGACAGAGCTTCCAACCACAAGTTTATTGTCTCCGCCGTGGCCGCTGAGGCTGACCTCGACACGGAGGAGGACCTGGAGCAGACCGCCACCGCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGATAGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTATGATGTCAACACTGCTATCTCTTTGCTTAAACAAACTGCCAACACAAGGTTTGTTGAGTCTGTTGAAGCCCATTTCCGTCTCAACATCGATCCTAAGTACAATGACCAGCAGCTGCGTGCAACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGTGAGAAGGTTGATGAAGCCAAAAGTGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATCGAACAGATTAAAGGAGGCTTCATGGAGTTTGACAAGCTGATTGCATCCCCGGATATGATGGTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGACCACGGGGGCTCATGCCAAATCCCAAGGCTGGTACAGTCACAGCGAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTTGAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCATTTGGGAAAGTTAATTTTACAGAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAAGGGAGCTAAAGGAGTGTACTGGAAAAGCGCTCACATATGCTCGTCAATGGGGCCTTCCATCAAGTTGAACATAAGAGAGATGATAGACTTCAAGCCTCCCACTGCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

346

Amino Acids

37.63

Weight (kDa)

9.3

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	138 - 328	3.4e-63	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	45, 48, 131, 210, 219, 261, 267, 281, 306
AclWI	GGATC	2 cut(s)	272, 470
AcoI	YGGCCR	2 cut(s)	216, 532
AcsI	RAATTY	1 cut(s)	809
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	485, 754, 947
AfeI	AGCGCT	1 cut(s)	958
AfiI	CCNNNNNNNGG	6 cut(s)	159, 238, 296, 432, 523, 749
AgsI	TTSAA	6 cut(s)	452, 785, 793, 809, 997, 1021
AjnI	CCWGG	5 cut(s)	63, 152, 249, 702, 774
AluBI	AGCT	7 cut(s)	105, 126, 185, 364, 499, 664, 935
AluI	AGCT	7 cut(s)	105, 126, 185, 364, 499, 664, 935
Alw26I	GTCTC	3 cut(s)	211, 470, 908
AlwI	GGATC	2 cut(s)	272, 470
AlwNI	CAGNNNCTG	1 cut(s)	499
Aor51HI	AGCGCT	1 cut(s)	958
AoxI	GGCC	4 cut(s)	216, 532, 700, 980
ApeKI	GCWGC	5 cut(s)	5, 170, 496, 499, 896
ApoI	RAATTY	1 cut(s)	809
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	2 cut(s)	14, 959
AspS9I	GGNCC	5 cut(s)	67, 157, 247, 719, 980
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	523, 578
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	4 cut(s)	67, 157, 247, 719
AxyI	CCTNAGG	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	879
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	157, 486, 508, 908
BccI	CCATC	3 cut(s)	91, 679, 995
BceAI	ACGGC	2 cut(s)	197, 254
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	5 cut(s)	65, 154, 251, 704, 776
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	3 cut(s)	211, 470, 908
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	960
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	9 cut(s)	6, 45, 48, 171, 219, 306, 497, 500, 897
BlsI	GCNGC	9 cut(s)	7, 46, 49, 172, 220, 307, 498, 501, 898
Bme1390I	CCNGG	6 cut(s)	65, 154, 251, 677, 704, 776
Bme18I	GGWCC	4 cut(s)	67, 157, 247, 719
BmgT120I	GGNCC	5 cut(s)	67, 157, 247, 719, 980
BmiI	GGNNCC	3 cut(s)	151, 158, 981
BmrFI	CCNGG	6 cut(s)	65, 154, 251, 677, 704, 776
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	2 cut(s)	59, 680
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	879
BpmI	CTGGAG	2 cut(s)	91, 272
Bpu10I	CCTNAGC	2 cut(s)	222, 365
BpuEI	CTTGAG	2 cut(s)	142, 302
BpuMI	CCSGG	1 cut(s)	677
Bsa29I	ATCGAT	1 cut(s)	474
BsaJI	CCNNGG	9 cut(s)	63, 142, 153, 213, 675, 703, 722, 744, 774
BsaWI	WCCGGW	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	6 cut(s)	159, 238, 296, 432, 523, 749
Bse1I	ACTGG	3 cut(s)	535, 832, 953
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	5 cut(s)	65, 154, 251, 704, 776
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	9 cut(s)	63, 142, 153, 213, 675, 703, 722, 744, 774
BseGI	GGATG	2 cut(s)	50, 671
BseLI	CCNNNNNNNGG	6 cut(s)	159, 238, 296, 432, 523, 749
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	535, 832, 953
BseRI	GAGGAG	2 cut(s)	13, 257
BseXI	GCAGC	4 cut(s)	157, 486, 508, 908
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	4 cut(s)	218, 534, 702, 982
BshVI	ATCGAT	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	160, 677
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	6 cut(s)	159, 238, 296, 432, 523, 749
BsmAI	GTCTC	3 cut(s)	211, 470, 908
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	218, 534, 702, 982
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	277, 475
BspACI	CCGC	9 cut(s)	45, 48, 131, 210, 219, 261, 267, 281, 306
BspANI	GGCC	4 cut(s)	218, 534, 702, 982
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	151, 158, 981
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	272, 470
BsrI	ACTGG	3 cut(s)	535, 832, 953
BssECI	CCNNGG	9 cut(s)	63, 142, 153, 213, 675, 703, 722, 744, 774
BssMI	GATC	2 cut(s)	277, 475
BssT1I	CCWWGG	2 cut(s)	142, 744
Bst2UI	CCWGG	5 cut(s)	65, 154, 251, 704, 776
Bst4CI	ACNGT	3 cut(s)	511, 541, 757
Bst6I	CTCTTC	1 cut(s)	780
BstC8I	GCNNGC	6 cut(s)	10, 36, 103, 504, 518, 700
BstDEI	CTNAG	6 cut(s)	222, 291, 339, 365, 480, 522
BstDSI	CCRYGG	2 cut(s)	213, 722
BstENI	CCTNNNNNAGG	2 cut(s)	294, 521
BstF5I	GGATG	2 cut(s)	50, 671
BstH2I	RGCGCY	1 cut(s)	960
BstHHI	GCGC	2 cut(s)	14, 959
BstKTI	GATC	2 cut(s)	280, 478
BstMAI	GTCTC	3 cut(s)	211, 470, 908
BstMBI	GATC	2 cut(s)	277, 475
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 44, 218, 224, 557, 590
BstNI	CCWGG	5 cut(s)	65, 154, 251, 704, 776
BstSCI	CCNGG	6 cut(s)	63, 152, 249, 675, 702, 774
BstV1I	GCAGC	4 cut(s)	157, 486, 508, 908
BstV2I	GAAGAC	1 cut(s)	879
Bsu15I	ATCGAT	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	218, 534, 702, 982
BsuTUI	ATCGAT	1 cut(s)	474
BtgI	CCRYGG	2 cut(s)	213, 722
BtsCI	GGATG	2 cut(s)	50, 671
BtsI	GCAGTG	4 cut(s)	396, 619, 906, 1029
BtsIMutI	CAGTG	4 cut(s)	396, 619, 906, 1029
Cac8I	GCNNGC	6 cut(s)	10, 36, 103, 504, 518, 700
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	2 cut(s)	14, 959
Cfr13I	GGNCC	5 cut(s)	67, 157, 247, 719, 980
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	484, 753, 946
CviAII	CATG	3 cut(s)	31, 649, 733
CviQI	GTAC	3 cut(s)	484, 753, 946
DdeI	CTNAG	6 cut(s)	222, 291, 339, 365, 480, 522
DpnI	GATC	2 cut(s)	279, 477
DpnII	GATC	2 cut(s)	277, 475
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	2 cut(s)	216, 532
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
EciI	GGCGGA	2 cut(s)	199, 270
Eco130I	CCWWGG	2 cut(s)	142, 744
Eco24I	GRGCYC	1 cut(s)	732
Eco47I	GGWCC	4 cut(s)	67, 157, 247, 719
Eco47III	AGCGCT	1 cut(s)	958
Eco81I	CCTNAGG	1 cut(s)	522
EcoNI	CCTNNNNNAGG	2 cut(s)	294, 521
EcoO109I	RGGNCCY	3 cut(s)	67, 247, 980
EcoRI	GAATTC	1 cut(s)	809
EcoRII	CCWGG	5 cut(s)	63, 152, 249, 702, 774
EcoT14I	CCWWGG	2 cut(s)	142, 744
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	2 cut(s)	142, 744
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	3 cut(s)	34, 652, 736
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	30, 648, 732
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	965
Fnu4HI	GCNGC	9 cut(s)	6, 45, 48, 171, 219, 306, 497, 500, 897
FokI	GGATG	2 cut(s)	37, 658
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	9 cut(s)	6, 45, 48, 171, 219, 306, 497, 500, 897
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	2 cut(s)	13, 958
GluI	GCNGC	9 cut(s)	6, 45, 48, 171, 219, 306, 497, 500, 897
GsuI	CTGGAG	2 cut(s)	91, 272
HaeII	RGCGCY	1 cut(s)	960
HaeIII	GGCC	4 cut(s)	218, 534, 702, 982
HapII	CCGG	2 cut(s)	160, 677
HhaI	GCGC	2 cut(s)	14, 959
Hin1II	CATG	3 cut(s)	34, 652, 736
Hin6I	GCGC	2 cut(s)	12, 957
HinP1I	GCGC	2 cut(s)	12, 957
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	443, 712
HpaII	CCGG	2 cut(s)	160, 677
HphI	GGTGA	2 cut(s)	523, 578
Hpy166II	GTNNAC	3 cut(s)	394, 838, 946
Hpy188I	TCNGA	1 cut(s)	815
Hpy188III	TCNNGA	3 cut(s)	108, 319, 793
Hpy8I	GTNNAC	3 cut(s)	394, 838, 946
HpyAV	CCTTC	4 cut(s)	565, 790, 887, 993
HpyCH4III	ACNGT	3 cut(s)	511, 541, 757
HpyCH4V	TGCA	5 cut(s)	506, 560, 593, 671, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 44, 218, 224, 557, 590
HpyF3I	CTNAG	6 cut(s)	222, 291, 339, 365, 480, 522
Hsp92II	CATG	3 cut(s)	34, 652, 736
HspAI	GCGC	2 cut(s)	12, 957
Kzo9I	GATC	2 cut(s)	277, 475
LmnI	GCTCC	3 cut(s)	110, 253, 932
Lsp1109I	GCAGC	4 cut(s)	157, 486, 508, 908
LweI	GCATC	2 cut(s)	59, 680
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	2 cut(s)	279, 477
MboI	GATC	2 cut(s)	277, 475
MboII	GAAGA	3 cut(s)	128, 797, 884
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	2 cut(s)	809, 859
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	34, 217, 235, 238, 242, 336, 635, 862, 1035
Mox20I	TGGCCA	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	4 cut(s)	414, 623, 636, 858
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	221, 499
MspI	CCGG	2 cut(s)	160, 677
MspR9I	CCNGG	6 cut(s)	65, 154, 251, 677, 704, 776
MvaI	CCWGG	5 cut(s)	65, 154, 251, 704, 776
MwoI	GCNNNNNNNGC	6 cut(s)	11, 44, 218, 224, 557, 590
NciI	CCSGG	1 cut(s)	677
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	2 cut(s)	277, 475
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	34, 652, 736
NlaIV	GGNNCC	3 cut(s)	151, 158, 981
NmuCI	GTSAC	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	9 cut(s)	7, 46, 49, 172, 220, 307, 498, 501, 898
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	2 cut(s)	67, 247
Psp5II	RGGWCCY	2 cut(s)	67, 247
Psp6I	CCWGG	5 cut(s)	63, 152, 249, 702, 774
PspGI	CCWGG	5 cut(s)	63, 152, 249, 702, 774
PspN4I	GGNNCC	3 cut(s)	151, 158, 981
PspPI	GGNCC	5 cut(s)	67, 157, 247, 719, 980
PspPPI	RGGWCCY	2 cut(s)	67, 247
PstNI	CAGNNNCTG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	3 cut(s)	485, 754, 947
RsaNI	GTAC	3 cut(s)	484, 753, 946
SaqAI	TTAA	4 cut(s)	414, 623, 636, 858
SatI	GCNGC	9 cut(s)	6, 45, 48, 171, 219, 306, 497, 500, 897
Sau3AI	GATC	2 cut(s)	277, 475
Sau96I	GGNCC	5 cut(s)	67, 157, 247, 719, 980
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	6 cut(s)	65, 154, 251, 677, 704, 776
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	2 cut(s)	59, 680
SinI	GGWCC	4 cut(s)	67, 157, 247, 719
SmlI	CTYRAG	2 cut(s)	121, 317
SmoI	CTYRAG	2 cut(s)	121, 317
Sse9I	AATT	2 cut(s)	809, 859
SsiI	CCGC	9 cut(s)	45, 48, 131, 210, 219, 261, 267, 281, 306
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	6 cut(s)	63, 152, 249, 675, 702, 774
StyI	CCWWGG	2 cut(s)	142, 744
TaaI	ACNGT	3 cut(s)	511, 541, 757
TaqI	TCGA	3 cut(s)	234, 474, 627
TasI	AATT	2 cut(s)	809, 859
TatI	WGTACW	2 cut(s)	483, 945
TauI	GCSGC	4 cut(s)	47, 50, 221, 308
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	4 cut(s)	414, 623, 636, 858
Tru9I	TTAA	4 cut(s)	414, 623, 636, 858
TscAI	CASTG	4 cut(s)	403, 619, 906, 1036
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	5 cut(s)	5, 170, 496, 499, 896
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	594, 637
TspGWI	ACGGA	2 cut(s)	254, 452
TspRI	CASTG	4 cut(s)	403, 619, 906, 1036
VpaK11BI	GGWCC	4 cut(s)	67, 157, 247, 719
XagI	CCTNNNNNAGG	2 cut(s)	294, 521
XapI	RAATTY	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.