Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

6580415 .. 6584539

Gene Structure 4125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTACAAGTACCACACCCTCCTCTTCTCTGATGCTGACGTACGCCTCCTCCTCCTCCTCCGTATTCCCACAAGACCTGACTCCCTCACTCGTCTCCTTCAAGCCCAAAAAGCCTCTCTTCACAACTTTCTCTCTCTGCCCACTTGTTTTGAGGCCTAGACAGAGAAGGGTCAGTCTCAGTTTCTTAAAGGAACCCAAAAAGTCTGAGCCTTTCCATGTCGTCGCGGCTGCTGTGACTACCGAGGCAGAGGTGGACGAGGCTGTGGAAGAAGAAGCAGCACTCAAAGAAGGTGATGGGTCTGCTCCTCCTGTTCCTGTTTCAAAGCCCAAGAAAGGGAAAGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAAAAATTGAGGGAAACTAAAAAAGAGTATGAGGTGAAGCCAGCTATAGCTTTACTGAATGAAATGGCGAGTGCAAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAATATAATGACCAACAGCTAAGGGCAACTGTTAATCTGCCCAAGGGAACTGGACAAACTGTTAAGGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGAGGAGGCCAAAAATGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAGCAGATAAAAGAAGGATTCATGGAATTTGACAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGCCTTGGAAAGATTCTAGGACCAAGAGGGCTCATGCCAAATCCAAAAGCTGGTACTGTGACTCCTAATATACCCCAGGCCATAGCAGAATTCAAACAAGGGAAAGTTGAATACAGAGCTGACAAAACTGGGATAGTTCACTTACGCTTTGGAAGAGCCGACTTTCCTGAAGAAGATCTTCTTGTAAACCTGCTCGCCGCAATTAAATCAGTAGAAACAAATAAGCCACCAGGTGCAAAAGGTGTTTACTGGAAGAGTGCACACATATGCTCATCGATGGGCCCTTCGATTAAGTTAAACATAAGGGAGATGCTTGATTTCAAGCTTCCAGCAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

359

Amino Acids

39.27

Weight (kDa)

9.42

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	151 - 341	1.7e-61	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	936
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccII	CGCG	1 cut(s)	227
AciI	CCGC	3 cut(s)	227, 502, 936
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	4 cut(s)	393, 473, 692, 827
AcuI	CTGAAG	2 cut(s)	510, 927
AdeI	CACNNNGTG	1 cut(s)	971
AfaI	GTAC	3 cut(s)	13, 44, 793
AfiI	CCNNNNNNNGG	3 cut(s)	335, 336, 788
AgsI	TTSAA	7 cut(s)	103, 324, 358, 398, 832, 848, 1060
AjnI	CCWGG	2 cut(s)	813, 967
AluBI	AGCT	7 cut(s)	344, 440, 446, 538, 788, 857, 1063
AluI	AGCT	7 cut(s)	344, 440, 446, 538, 788, 857, 1063
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	3 cut(s)	100, 182, 357
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	4 cut(s)	155, 621, 816, 1018
ApaI	GGGCCC	1 cut(s)	1022
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	230, 278, 344
ApoI	RAATTY	4 cut(s)	393, 473, 692, 827
Asp700I	GAANNNNTTC	1 cut(s)	915
AspS9I	GGNCC	4 cut(s)	375, 758, 1018, 1019
AsuHPI	GGTGA	4 cut(s)	305, 442, 617, 705
AsuNHI	GCTAGC	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	375, 758
BaeGI	GKGCMC	2 cut(s)	1000, 1022
BanII	GRGCYC	2 cut(s)	771, 1022
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	3 cut(s)	217, 290, 331
BccI	CCATC	2 cut(s)	290, 1009
BciT130I	CCWGG	2 cut(s)	815, 969
BcoDI	GTCTC	3 cut(s)	100, 182, 357
BfaI	CTAG	3 cut(s)	159, 738, 755
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	936
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	5 cut(s)	228, 231, 279, 345, 936
BlsI	GCNGC	5 cut(s)	229, 232, 280, 346, 937
Bme1390I	CCNGG	2 cut(s)	815, 969
Bme18I	GGWCC	2 cut(s)	375, 758
BmgT120I	GGNCC	4 cut(s)	375, 758, 1018, 1019
BmiI	GGNNCC	2 cut(s)	195, 1020
BmrFI	CCNGG	2 cut(s)	815, 969
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	3 cut(s)	24, 714, 1038
BmtI	GCTAGC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	1013
BsaJI	CCNNGG	5 cut(s)	243, 561, 729, 742, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 784, 814
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 336, 788
Bse1I	ACTGG	3 cut(s)	574, 871, 992
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	815, 969
BseCI	ATCGAT	1 cut(s)	1013
BseDI	CCNNGG	5 cut(s)	243, 561, 729, 742, 813
BseLI	CCNNNNNNNGG	3 cut(s)	335, 336, 788
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	193, 198
BseNI	ACTGG	3 cut(s)	574, 871, 992
BseRI	GAGGAG	7 cut(s)	13, 40, 43, 46, 49, 297, 632
BseSI	GKGCMC	2 cut(s)	1000, 1022
BseXI	GCAGC	3 cut(s)	217, 290, 331
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	4 cut(s)	157, 623, 818, 1020
BshVI	ATCGAT	1 cut(s)	1013
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiWI	CGTACG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	335, 336, 788
BsmAI	GTCTC	3 cut(s)	100, 182, 357
BsmBI	CGTCTC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	157, 623, 818, 1020
Bsp120I	GGGCCC	1 cut(s)	1018
Bsp1286I	GDGCHC	3 cut(s)	771, 1000, 1022
Bsp143I	GATC	2 cut(s)	514, 913
BspACI	CCGC	3 cut(s)	227, 502, 936
BspANI	GGCC	4 cut(s)	157, 623, 818, 1020
BspCNI	CTCAG	2 cut(s)	192, 199
BspDI	ATCGAT	1 cut(s)	1013
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	195, 1020
BspMI	ACCTGC	1 cut(s)	936
BspOI	GCTAGC	1 cut(s)	741
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	886
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	574, 871, 992
BssECI	CCNNGG	5 cut(s)	243, 561, 729, 742, 813
BssMI	GATC	2 cut(s)	514, 913
BssT1I	CCWWGG	3 cut(s)	561, 729, 742
Bst2UI	CCWGG	2 cut(s)	815, 969
Bst4CI	ACNGT	3 cut(s)	550, 580, 796
Bst6I	CTCTTC	5 cut(s)	31, 125, 353, 886, 986
BstC8I	GCNNGC	3 cut(s)	438, 739, 933
BstDEI	CTNAG	3 cut(s)	179, 207, 539
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	517, 916
BstMAI	GTCTC	3 cut(s)	100, 182, 357
BstMBI	GATC	2 cut(s)	514, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 629
BstNI	CCWGG	2 cut(s)	815, 969
BstSCI	CCNGG	2 cut(s)	813, 967
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	2 cut(s)	1000, 1022
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	217, 290, 331
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
Bsu15I	ATCGAT	1 cut(s)	1013
BsuRI	GGCC	4 cut(s)	157, 623, 818, 1020
BsuTUI	ATCGAT	1 cut(s)	1013
BveI	ACCTGC	1 cut(s)	936
Cac8I	GCNNGC	3 cut(s)	438, 739, 933
Cfr13I	GGNCC	4 cut(s)	375, 758, 1018, 1019
ClaI	ATCGAT	1 cut(s)	1013
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	3 cut(s)	12, 43, 792
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	3 cut(s)	218, 688, 772
CviQI	GTAC	3 cut(s)	12, 43, 792
DdeI	CTNAG	3 cut(s)	179, 207, 539
DpnI	GATC	2 cut(s)	516, 915
DpnII	GATC	2 cut(s)	514, 913
DraIII	CACNNNGTG	1 cut(s)	971
Eam1104I	CTCTTC	5 cut(s)	31, 125, 353, 886, 986
EarI	CTCTTC	5 cut(s)	31, 125, 353, 886, 986
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	3 cut(s)	561, 729, 742
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	771, 1022
Eco47I	GGWCC	2 cut(s)	375, 758
Eco57I	CTGAAG	2 cut(s)	510, 927
EcoO109I	RGGNCCY	1 cut(s)	1019
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	813, 967
EcoT14I	CCWWGG	3 cut(s)	561, 729, 742
EcoT38I	GRGCYC	2 cut(s)	771, 1022
ErhI	CCWWGG	3 cut(s)	561, 729, 742
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	221, 691, 775
FalI	AAGNNNNNCTT	6 cut(s)	104, 136, 900, 932, 903, 935
FatI	CATG	3 cut(s)	217, 687, 771
FauNDI	CATATG	1 cut(s)	1004
Fnu4HI	GCNGC	5 cut(s)	228, 231, 279, 345, 936
FriOI	GRGCYC	2 cut(s)	771, 1022
Fsp4HI	GCNGC	5 cut(s)	228, 231, 279, 345, 936
FspBI	CTAG	3 cut(s)	159, 738, 755
GluI	GCNGC	5 cut(s)	228, 231, 279, 345, 936
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	4 cut(s)	157, 623, 818, 1020
Hin1II	CATG	3 cut(s)	221, 691, 775
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	5 cut(s)	82, 384, 684, 751, 799
HphI	GGTGA	4 cut(s)	305, 442, 617, 705
Hpy166II	GTNNAC	5 cut(s)	256, 877, 925, 985, 998
Hpy188I	TCNGA	2 cut(s)	33, 208
Hpy188III	TCNNGA	1 cut(s)	905
Hpy8I	GTNNAC	5 cut(s)	256, 877, 925, 985, 998
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	109, 162, 284, 674, 1032
HpyCH4III	ACNGT	3 cut(s)	550, 580, 796
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	347, 470, 974, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 629
HpyF3I	CTNAG	3 cut(s)	179, 207, 539
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	221, 691, 775
Kzo9I	GATC	2 cut(s)	514, 913
LguI	GCTCTTC	1 cut(s)	886
LmnI	GCTCC	2 cut(s)	310, 635
Lsp1109I	GCAGC	3 cut(s)	217, 290, 331
LweI	GCATC	3 cut(s)	24, 714, 1038
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	3 cut(s)	159, 738, 755
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	235, 796
MalI	GATC	2 cut(s)	516, 915
MboI	GATC	2 cut(s)	514, 913
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	3 cut(s)	771, 1000, 1022
MluCI	AATT	7 cut(s)	393, 401, 473, 692, 705, 827, 939
MlyI	GAGTC	2 cut(s)	76, 793
MroXI	GAANNNNTTC	1 cut(s)	915
MseI	TTAA	7 cut(s)	188, 552, 582, 704, 942, 1029, 1034
MslI	CAYNNNNRTG	1 cut(s)	1003
MspR9I	CCNGG	2 cut(s)	815, 969
MvaI	CCWGG	2 cut(s)	815, 969
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	112, 629
NdeI	CATATG	1 cut(s)	1004
NdeII	GATC	2 cut(s)	514, 913
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	3 cut(s)	221, 691, 775
NlaIV	GGNNCC	2 cut(s)	195, 1020
NmuCI	GTSAC	2 cut(s)	235, 796
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	384, 684, 751
Pfl23II	CGTACG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	5 cut(s)	229, 232, 280, 346, 937
PleI	GAGTC	2 cut(s)	76, 793
PpsI	GAGTC	2 cut(s)	76, 793
Psp6I	CCWGG	2 cut(s)	813, 967
PspGI	CCWGG	2 cut(s)	813, 967
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	195, 1020
PspOMI	GGGCCC	1 cut(s)	1018
PspPI	GGNCC	4 cut(s)	375, 758, 1018, 1019
PsuI	RGATCY	1 cut(s)	913
RsaI	GTAC	3 cut(s)	13, 44, 793
RsaNI	GTAC	3 cut(s)	12, 43, 792
RseI	CAYNNNNRTG	1 cut(s)	1003
SapI	GCTCTTC	1 cut(s)	886
SaqAI	TTAA	7 cut(s)	188, 552, 582, 704, 942, 1029, 1034
SatI	GCNGC	5 cut(s)	228, 231, 279, 345, 936
Sau3AI	GATC	2 cut(s)	514, 913
Sau96I	GGNCC	4 cut(s)	375, 758, 1018, 1019
SchI	GAGTC	2 cut(s)	76, 793
ScrFI	CCNGG	2 cut(s)	815, 969
SduI	GDGCHC	3 cut(s)	771, 1000, 1022
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	3 cut(s)	24, 714, 1038
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	2 cut(s)	375, 758
SmiMI	CAYNNNNRTG	1 cut(s)	1003
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	7 cut(s)	393, 401, 473, 692, 705, 827, 939
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	227, 502, 936
SspMI	CTAG	3 cut(s)	159, 738, 755
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	813, 967
StyI	CCWWGG	3 cut(s)	561, 729, 742
TaaI	ACNGT	3 cut(s)	550, 580, 796
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	1013, 1025
TasI	AATT	7 cut(s)	393, 401, 473, 692, 705, 827, 939
TauI	GCSGC	2 cut(s)	230, 938
TfiI	GAWTC	3 cut(s)	384, 684, 751
Tru1I	TTAA	7 cut(s)	188, 552, 582, 704, 942, 1029, 1034
Tru9I	TTAA	7 cut(s)	188, 552, 582, 704, 942, 1029, 1034
TseFI	GTSAC	2 cut(s)	235, 796
TseI	GCWGC	3 cut(s)	230, 278, 344
Tsp45I	GTSAC	2 cut(s)	235, 796
TspDTI	ATGAA	2 cut(s)	471, 676
TspGWI	ACGGA	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	788
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	2 cut(s)	375, 758
XapI	RAATTY	4 cut(s)	393, 473, 692, 827
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	3 cut(s)	159, 738, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.