Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

63512426 .. 63516473

Gene Structure 4048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTACGAGTACCAGACCCTCCTCTTCTCTGATGCTGACGTACGCCTCCTCCTCCTCCGTATTCCCACAAGACCTGACTCCCTCACTCGTCTCCTTCAAGCCCAAAAAGCCTCTCTTCACAACTTTCTCTCTCTGCCCACTTGTTTTGAGGCCTAGACAGAGAAGGGTCAGTCTGAGTTTCTTAAAGGAACCCAAAAAGTCTGAGCCTTTCCATGTCGTCGCGGCTGCTGTGACTACCGAGGCAGAGGTGGACGAGGCTGTGGAAGAAGAAGCAGCACTCAAAGAAGGTGATGGGTCTGCTCCTCCTGTGACTGTTTCAAAGCCCAAGAAAGGGAAAGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAAAAATTGAGGGAAACTAAAAAAGAGTATGAGGTGAAGCCAGCTATAGCTTTACTGAAAGAAATGGCGAGTGCAAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAATATAATGACCAACAGCTAAGGGCAACTGTTAATCTGCCCAAGGGAACTGGACAAACTGTTAAGGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGAGGAGGCCAAAAACGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAGCAGATAAAAGAAGGATTCATGGAATTTGACAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTTGCTAGCCTTGGAAAGATTCTAGGACCAAGAGGGCTCATGCCAAATCCAAAAGCTGGTACTGTGACTCCTAATATACCCCAGGCCATAGCAGAATTCAAACAAGGGAAAGTTGAATACAGAGCTGACAAAACTGGGATAGTTCACTTACGCTTTGGAAGAGCCGACTTTCCTGAAGAAGATCTTCTTGTAAACCTGCTCGCCACAATTAAATCAGTAGAAACAAATAAGCCACCAGGTGCAAAAGGTGTTTACTGGAAGAGTGCACATATATGCTCATCGATGGGCCCTTCGATTAAGTTAAACATAAGGGAGATGCTTGATTTCAAGCTTCCAGCAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

358

Amino Acids

39.29

Weight (kDa)

9.52

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	150 - 340	9e-62	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	933
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	224, 499
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	4 cut(s)	390, 470, 689, 824
AcuI	CTGAAG	2 cut(s)	507, 924
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	3 cut(s)	13, 44, 790
AfiI	CCNNNNNNNGG	3 cut(s)	332, 333, 785
AgsI	TTSAA	7 cut(s)	100, 321, 355, 395, 829, 845, 1057
AjnI	CCWGG	2 cut(s)	810, 964
AluBI	AGCT	7 cut(s)	341, 437, 443, 535, 785, 854, 1060
AluI	AGCT	7 cut(s)	341, 437, 443, 535, 785, 854, 1060
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	97, 354
Alw44I	GTGCAC	1 cut(s)	993
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	4 cut(s)	152, 618, 813, 1015
ApaI	GGGCCC	1 cut(s)	1019
ApaLI	GTGCAC	1 cut(s)	993
ApeKI	GCWGC	3 cut(s)	227, 275, 341
ApoI	RAATTY	4 cut(s)	390, 470, 689, 824
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	4 cut(s)	372, 755, 1015, 1016
AsuHPI	GGTGA	4 cut(s)	302, 439, 614, 702
AsuNHI	GCTAGC	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	372, 755
BaeGI	GKGCMC	2 cut(s)	997, 1019
BanII	GRGCYC	2 cut(s)	768, 1019
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	3 cut(s)	214, 287, 328
BccI	CCATC	2 cut(s)	287, 1006
BciT130I	CCWGG	2 cut(s)	812, 966
BcoDI	GTCTC	2 cut(s)	97, 354
BfaI	CTAG	3 cut(s)	156, 735, 752
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	933
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	4 cut(s)	225, 228, 276, 342
BlsI	GCNGC	4 cut(s)	226, 229, 277, 343
Bme1390I	CCNGG	2 cut(s)	812, 966
Bme18I	GGWCC	2 cut(s)	372, 755
BmgT120I	GGNCC	4 cut(s)	372, 755, 1015, 1016
BmiI	GGNNCC	2 cut(s)	192, 1017
BmrFI	CCNGG	2 cut(s)	812, 966
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	3 cut(s)	24, 711, 1035
BmtI	GCTAGC	1 cut(s)	738
BmuI	ACTGGG	1 cut(s)	873
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	582
Bsa29I	ATCGAT	1 cut(s)	1010
BsaJI	CCNNGG	5 cut(s)	240, 558, 726, 739, 810
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 781, 811
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 333, 785
Bse1I	ACTGG	3 cut(s)	571, 868, 989
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	812, 966
BseCI	ATCGAT	1 cut(s)	1010
BseDI	CCNNGG	5 cut(s)	240, 558, 726, 739, 810
BseLI	CCNNNNNNNGG	3 cut(s)	332, 333, 785
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	167, 195
BseNI	ACTGG	3 cut(s)	571, 868, 989
BseRI	GAGGAG	6 cut(s)	13, 40, 43, 46, 294, 629
BseSI	GKGCMC	2 cut(s)	997, 1019
BseXI	GCAGC	3 cut(s)	214, 287, 328
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	4 cut(s)	154, 620, 815, 1017
BshVI	ATCGAT	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	997
BsiWI	CGTACG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	332, 333, 785
BsmAI	GTCTC	2 cut(s)	97, 354
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	4 cut(s)	154, 620, 815, 1017
Bsp120I	GGGCCC	1 cut(s)	1015
Bsp1286I	GDGCHC	3 cut(s)	768, 997, 1019
Bsp143I	GATC	2 cut(s)	511, 910
BspACI	CCGC	2 cut(s)	224, 499
BspANI	GGCC	4 cut(s)	154, 620, 815, 1017
BspCNI	CTCAG	2 cut(s)	168, 196
BspDI	ATCGAT	1 cut(s)	1010
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	192, 1017
BspMI	ACCTGC	1 cut(s)	933
BspOI	GCTAGC	1 cut(s)	738
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	883
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	571, 868, 989
BssECI	CCNNGG	5 cut(s)	240, 558, 726, 739, 810
BssMI	GATC	2 cut(s)	511, 910
BssT1I	CCWWGG	3 cut(s)	558, 726, 739
Bst2UI	CCWGG	2 cut(s)	812, 966
Bst4CI	ACNGT	4 cut(s)	316, 547, 577, 793
Bst6I	CTCTTC	5 cut(s)	31, 122, 350, 883, 983
BstC8I	GCNNGC	3 cut(s)	435, 736, 930
BstDEI	CTNAG	3 cut(s)	176, 204, 536
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	514, 913
BstMAI	GTCTC	2 cut(s)	97, 354
BstMBI	GATC	2 cut(s)	511, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 626
BstNI	CCWGG	2 cut(s)	812, 966
BstSCI	CCNGG	2 cut(s)	810, 964
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	2 cut(s)	997, 1019
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	214, 287, 328
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
Bsu15I	ATCGAT	1 cut(s)	1010
BsuRI	GGCC	4 cut(s)	154, 620, 815, 1017
BsuTUI	ATCGAT	1 cut(s)	1010
BveI	ACCTGC	1 cut(s)	933
Cac8I	GCNNGC	3 cut(s)	435, 736, 930
Cfr13I	GGNCC	4 cut(s)	372, 755, 1015, 1016
ClaI	ATCGAT	1 cut(s)	1010
CsiI	ACCWGGT	1 cut(s)	964
Csp6I	GTAC	3 cut(s)	12, 43, 789
CspCI	CAANNNNNGTGG	2 cut(s)	129, 164
CviAII	CATG	3 cut(s)	215, 685, 769
CviQI	GTAC	3 cut(s)	12, 43, 789
DdeI	CTNAG	3 cut(s)	176, 204, 536
DpnI	GATC	2 cut(s)	513, 912
DpnII	GATC	2 cut(s)	511, 910
DraIII	CACNNNGTG	1 cut(s)	968
Eam1104I	CTCTTC	5 cut(s)	31, 122, 350, 883, 983
EarI	CTCTTC	5 cut(s)	31, 122, 350, 883, 983
EciI	GGCGGA	1 cut(s)	488
Eco130I	CCWWGG	3 cut(s)	558, 726, 739
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	768, 1019
Eco47I	GGWCC	2 cut(s)	372, 755
Eco57I	CTGAAG	2 cut(s)	507, 924
EcoO109I	RGGNCCY	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	810, 964
EcoT14I	CCWWGG	3 cut(s)	558, 726, 739
EcoT38I	GRGCYC	2 cut(s)	768, 1019
ErhI	CCWWGG	3 cut(s)	558, 726, 739
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	218, 688, 772
FalI	AAGNNNNNCTT	6 cut(s)	101, 133, 897, 929, 900, 932
FatI	CATG	3 cut(s)	214, 684, 768
Fnu4HI	GCNGC	4 cut(s)	225, 228, 276, 342
FriOI	GRGCYC	2 cut(s)	768, 1019
Fsp4HI	GCNGC	4 cut(s)	225, 228, 276, 342
FspBI	CTAG	3 cut(s)	156, 735, 752
GluI	GCNGC	4 cut(s)	225, 228, 276, 342
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	4 cut(s)	154, 620, 815, 1017
Hin1II	CATG	3 cut(s)	218, 688, 772
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	5 cut(s)	79, 381, 681, 748, 796
HphI	GGTGA	4 cut(s)	302, 439, 614, 702
Hpy166II	GTNNAC	5 cut(s)	253, 874, 922, 982, 995
Hpy188I	TCNGA	3 cut(s)	33, 177, 205
Hpy188III	TCNNGA	1 cut(s)	902
Hpy8I	GTNNAC	5 cut(s)	253, 874, 922, 982, 995
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	5 cut(s)	106, 159, 281, 671, 1029
HpyCH4III	ACNGT	4 cut(s)	316, 547, 577, 793
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	344, 467, 971, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 626
HpyF3I	CTNAG	3 cut(s)	176, 204, 536
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	218, 688, 772
Kzo9I	GATC	2 cut(s)	511, 910
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	2 cut(s)	307, 632
Lsp1109I	GCAGC	3 cut(s)	214, 287, 328
LweI	GCATC	3 cut(s)	24, 711, 1035
MabI	ACCWGGT	1 cut(s)	964
MaeI	CTAG	3 cut(s)	156, 735, 752
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	232, 310, 793
MalI	GATC	2 cut(s)	513, 912
MboI	GATC	2 cut(s)	511, 910
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	3 cut(s)	768, 997, 1019
MluCI	AATT	7 cut(s)	390, 398, 470, 689, 702, 824, 936
MlyI	GAGTC	2 cut(s)	73, 790
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	7 cut(s)	185, 549, 579, 701, 939, 1026, 1031
MslI	CAYNNNNRTG	1 cut(s)	1000
MspR9I	CCNGG	2 cut(s)	812, 966
MvaI	CCWGG	2 cut(s)	812, 966
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	109, 626
NdeII	GATC	2 cut(s)	511, 910
NheI	GCTAGC	1 cut(s)	734
NlaIII	CATG	3 cut(s)	218, 688, 772
NlaIV	GGNNCC	2 cut(s)	192, 1017
NmuCI	GTSAC	3 cut(s)	232, 310, 793
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	381, 681, 748
Pfl23II	CGTACG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	226, 229, 277, 343
PleI	GAGTC	2 cut(s)	73, 790
PpsI	GAGTC	2 cut(s)	73, 790
Psp6I	CCWGG	2 cut(s)	810, 964
PspGI	CCWGG	2 cut(s)	810, 964
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	192, 1017
PspOMI	GGGCCC	1 cut(s)	1015
PspPI	GGNCC	4 cut(s)	372, 755, 1015, 1016
PsuI	RGATCY	1 cut(s)	910
RsaI	GTAC	3 cut(s)	13, 44, 790
RsaNI	GTAC	3 cut(s)	12, 43, 789
RseI	CAYNNNNRTG	1 cut(s)	1000
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	7 cut(s)	185, 549, 579, 701, 939, 1026, 1031
SatI	GCNGC	4 cut(s)	225, 228, 276, 342
Sau3AI	GATC	2 cut(s)	511, 910
Sau96I	GGNCC	4 cut(s)	372, 755, 1015, 1016
SchI	GAGTC	2 cut(s)	73, 790
ScrFI	CCNGG	2 cut(s)	812, 966
SduI	GDGCHC	3 cut(s)	768, 997, 1019
SexAI	ACCWGGT	1 cut(s)	964
SfaNI	GCATC	3 cut(s)	24, 711, 1035
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	372, 755
SmiMI	CAYNNNNRTG	1 cut(s)	1000
SmlI	CTYRAG	1 cut(s)	597
SmoI	CTYRAG	1 cut(s)	597
Sse9I	AATT	7 cut(s)	390, 398, 470, 689, 702, 824, 936
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	224, 499
SspMI	CTAG	3 cut(s)	156, 735, 752
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	810, 964
StyI	CCWWGG	3 cut(s)	558, 726, 739
TaaI	ACNGT	4 cut(s)	316, 547, 577, 793
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	1010, 1022
TasI	AATT	7 cut(s)	390, 398, 470, 689, 702, 824, 936
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	381, 681, 748
Tru1I	TTAA	7 cut(s)	185, 549, 579, 701, 939, 1026, 1031
Tru9I	TTAA	7 cut(s)	185, 549, 579, 701, 939, 1026, 1031
TseFI	GTSAC	3 cut(s)	232, 310, 793
TseI	GCWGC	3 cut(s)	227, 275, 341
Tsp45I	GTSAC	3 cut(s)	232, 310, 793
TspDTI	ATGAA	1 cut(s)	673
TspGWI	ACGGA	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	785
VneI	GTGCAC	1 cut(s)	993
VpaK11BI	GGWCC	2 cut(s)	372, 755
XapI	RAATTY	4 cut(s)	390, 470, 689, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	3 cut(s)	156, 735, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.