Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

35642694 .. 35645493

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1302000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTACCAGCACCACACCCTCGTCCCTCATGCTAACGTACGCCTCCTCCTACGTGCACCCACAAGACCTCACTCCCTCCCTCGTCTCCTTCCAGCCAGAGCCCCTCTTCAAAACCCTCTGCCTTTGCCCGCTGGCTCTGAGGCCTCGCGAGATAAAACCAAGCAAATGTGCCAATTCCGAGCCTCAACGAGTGCCCGCGGCGGCTCTGACGGCGGAGGCAGAGGTATCTGAGGATGTGGATGAGAACGAAGAAGTGAAAGGAGGTGATGGGTCTGTTGCTGTTGCTGTTTCTTCAAAGCCCAAGAAAGGGAAGGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAGAAATTGAGGGAAACCAAAAAAGAGTATGCGCTGCAGCCTGCCATTGCTTTACTGAAAGAAATGACAAATACGAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAATATAATGACCAGCAGCTAAGAGCAACTGTAAACCTGCCCCAAGGGAACTGGACAGACTCAAAGTGGCTGTTCTTACTCAAGGTAGTTACGATTCTCAATTTCTCACCTCTGCACTACTGTCCCTGGTGGAGAAAGAGTAATTATATCTCGCATTCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

219

Amino Acids

24.56

Weight (kDa)

9.21

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	537
AccII	CGCG	2 cut(s)	150, 200
AciI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	366, 446
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	308, 309
AgsI	TTSAA	3 cut(s)	112, 297, 331
AjnI	CCWGG	1 cut(s)	617
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	91, 330
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	143
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	4 cut(s)	317, 403, 406, 508
ApoI	RAATTY	2 cut(s)	366, 446
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	278, 591
AvaII	GGWCC	1 cut(s)	348
BaeGI	GKGCMC	2 cut(s)	60, 198
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	304, 390, 418, 520
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	91, 330
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	6 cut(s)	201, 204, 318, 404, 407, 509
BlsI	GCNGC	6 cut(s)	202, 205, 319, 405, 408, 510
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	557
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	198, 535, 617
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 309
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	320, 414
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	3 cut(s)	198, 535, 617
BseGI	GGATG	2 cut(s)	241, 247
BseLI	CCNNNNNNNGG	2 cut(s)	308, 309
BseMI	GCAATG	2 cut(s)	320, 414
BseMII	CTCAG	2 cut(s)	131, 222
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	2 cut(s)	60, 198
BseXI	GCAGC	4 cut(s)	304, 390, 418, 520
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	2 cut(s)	150, 200
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	60
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	10, 600
BslI	CCNNNNNNNGG	2 cut(s)	308, 309
BsmAI	GTCTC	2 cut(s)	91, 330
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	10, 600
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	60, 105, 198
Bsp143I	GATC	1 cut(s)	487
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	132, 223
BspFNI	CGCG	2 cut(s)	150, 200
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	320, 414
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	3 cut(s)	198, 535, 617
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	523, 614
Bst6I	CTCTTC	2 cut(s)	113, 326
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	131, 135, 198, 411
BstDEI	CTNAG	3 cut(s)	140, 231, 512
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	241, 247
BstFNI	CGCG	2 cut(s)	150, 200
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	91, 330
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	2 cut(s)	60, 198
BstUI	CGCG	2 cut(s)	150, 200
BstV1I	GCAGC	4 cut(s)	304, 390, 418, 520
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	241, 247
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	4 cut(s)	131, 135, 198, 411
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	348
Cfr42I	CCGCGG	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	140, 231, 512
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	113, 326
EarI	CTCTTC	2 cut(s)	113, 326
EciI	GGCGGA	2 cut(s)	230, 464
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 399, 498, 639, 655
FaqI	GGGAC	2 cut(s)	10, 600
FatI	CATG	1 cut(s)	30
FauI	CCCGC	2 cut(s)	138, 205
Fnu4HI	GCNGC	6 cut(s)	201, 204, 318, 404, 407, 509
FokI	GGATG	2 cut(s)	248, 254
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	6 cut(s)	201, 204, 318, 404, 407, 509
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	201, 204, 318, 404, 407, 509
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	3 cut(s)	357, 551, 586
HphI	GGTGA	2 cut(s)	278, 591
Hpy166II	GTNNAC	2 cut(s)	58, 526
Hpy188I	TCNGA	5 cut(s)	141, 181, 210, 232, 372
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	58, 526
HpyAV	CCTTC	2 cut(s)	100, 307
HpyCH4III	ACNGT	2 cut(s)	523, 614
HpyCH4IV	ACGT	2 cut(s)	38, 54
HpyCH4V	TGCA	4 cut(s)	58, 320, 406, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	140, 231, 512
HpySE526I	ACGT	2 cut(s)	38, 54
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	401
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	487
Lsp1109I	GCAGC	4 cut(s)	304, 390, 418, 520
MaeII	ACGT	2 cut(s)	38, 54
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	4 cut(s)	100, 263, 285, 343
MhlI	GDGCHC	3 cut(s)	60, 105, 198
MluCI	AATT	6 cut(s)	175, 366, 374, 446, 592, 634
MlyI	GAGTC	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	133, 200
MspR9I	CCNGG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	619
MvnI	CGCG	2 cut(s)	150, 200
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	2 cut(s)	357, 586
Pfl23II	CGTACG	1 cut(s)	39
PkrI	GCNGC	6 cut(s)	202, 205, 319, 405, 408, 510
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspLI	CGTACG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	408
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SacII	CCGCGG	1 cut(s)	201
SatI	GCNGC	6 cut(s)	201, 204, 318, 404, 407, 509
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	3 cut(s)	60, 105, 198
SfcI	CTRYAG	1 cut(s)	404
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	175, 366, 374, 446, 592, 634
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	523, 614
TaiI	ACGT	2 cut(s)	41, 57
TasI	AATT	6 cut(s)	175, 366, 374, 446, 592, 634
TauI	GCSGC	2 cut(s)	203, 206
TfiI	GAWTC	2 cut(s)	357, 586
TseI	GCWGC	4 cut(s)	317, 403, 406, 508
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	2 cut(s)	366, 446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.