Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000008.1

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

146292 .. 149040

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000008.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcgtgtgcaaaatttgtagaaactgctgaagcccatttccgcctcaacattgatccaaaatacaatgaccaacagctaagggcaactgttaatctgcccaagggcactggacaaactgttaaggtggctgttcttactcaaggtgaaaggtttgaggaggccaaaaacgctggagcagatttggttggtggagatgatttgatacagcagataaaagaaggattcatggaatttgacaagttaattgcttcaccagatatgatgcccaaggttgctagccttggaaagattctaggaccaagagggctcatgccaaatccaaaagctggtaccgtgactcctaatataccccaggccatagccgaattcaaacaagggaaagttgaatacagagctgacaaaaccgggatagttcacttacgctttggaagagccgactttcctgaagaagatcttcttgtaaacctgctcgccgcaattaaatcagtagaaacaaataagccaccaggtgcaaaaggtgtttactggaagagtgcacacatatgctcatcaatgggcccttcgattaagttaaacataagggagatgcttgatttcaagcttccagcaagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

206

Amino Acids

22.42

Weight (kDa)

8.78

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	2 cut(s)	43, 477
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	14, 233, 368
AcuI	CTGAAG	2 cut(s)	51, 468
AdeI	CACNNNGTG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	3 cut(s)	373, 389, 601
AjnI	CCWGG	2 cut(s)	354, 508
AluBI	AGCT	4 cut(s)	79, 329, 398, 604
AluI	AGCT	4 cut(s)	79, 329, 398, 604
Alw21I	GWGCWC	1 cut(s)	541
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	3 cut(s)	162, 357, 559
ApaI	GGGCCC	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	537
ApoI	RAATTY	3 cut(s)	14, 233, 368
Asp700I	GAANNNNTTC	1 cut(s)	456
Asp718I	GGTACC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	299, 559, 560
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	158, 246
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	3 cut(s)	110, 541, 563
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	312, 563
Bbv12I	GWGCWC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	356, 510
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	2 cut(s)	279, 296
BfuAI	ACCTGC	1 cut(s)	477
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	356, 409, 510
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	299, 559, 560
BmiI	GGNNCC	2 cut(s)	334, 561
BmrFI	CCNGG	3 cut(s)	356, 409, 510
BmsI	GCATC	2 cut(s)	255, 579
BmtI	GCTAGC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	409
BsaJI	CCNNGG	4 cut(s)	102, 270, 283, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	115, 533
BseBI	CCWGG	2 cut(s)	356, 510
BseDI	CCNNGG	4 cut(s)	102, 270, 283, 354
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	115, 533
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	3 cut(s)	110, 541, 563
BshFI	GGCC	3 cut(s)	164, 359, 561
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	3 cut(s)	164, 359, 561
Bsp120I	GGGCCC	1 cut(s)	559
Bsp1286I	GDGCHC	4 cut(s)	110, 312, 541, 563
Bsp143I	GATC	2 cut(s)	55, 454
BspACI	CCGC	2 cut(s)	43, 477
BspANI	GGCC	3 cut(s)	164, 359, 561
BspLI	GGNNCC	2 cut(s)	334, 561
BspMI	ACCTGC	1 cut(s)	477
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	50
BspQI	GCTCTTC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	115, 533
BssECI	CCNNGG	4 cut(s)	102, 270, 283, 354
BssMI	GATC	2 cut(s)	55, 454
BssT1I	CCWWGG	3 cut(s)	102, 270, 283
Bst2UI	CCWGG	2 cut(s)	356, 510
Bst4CI	ACNGT	3 cut(s)	91, 121, 337
Bst6I	CTCTTC	2 cut(s)	427, 527
BstC8I	GCNNGC	2 cut(s)	280, 474
BstDEI	CTNAG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	58, 457
BstMBI	GATC	2 cut(s)	55, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	356, 510
BstSCI	CCNGG	3 cut(s)	354, 407, 508
BstSLI	GKGCMC	3 cut(s)	110, 541, 563
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	164, 359, 561
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	280, 474
Cfr13I	GGNCC	3 cut(s)	299, 559, 560
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	229, 313
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	57, 456
DpnII	GATC	2 cut(s)	55, 454
DraIII	CACNNNGTG	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	427, 527
EarI	CTCTTC	2 cut(s)	427, 527
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	102, 270, 283
Eco24I	GRGCYC	2 cut(s)	312, 563
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	2 cut(s)	51, 468
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	354, 508
EcoT14I	CCWWGG	3 cut(s)	102, 270, 283
EcoT38I	GRGCYC	2 cut(s)	312, 563
ErhI	CCWWGG	3 cut(s)	102, 270, 283
FaeI	CATG	2 cut(s)	232, 316
FaiI	YATR	8 cut(s)	230, 263, 314, 350, 362, 545, 547, 581
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 444, 476
FatI	CATG	2 cut(s)	228, 312
FauNDI	CATATG	1 cut(s)	545
Fnu4HI	GCNGC	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	312, 563
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	279, 296
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	164, 359, 561
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	2 cut(s)	232, 316
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	225, 292, 340
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	2 cut(s)	158, 246
Hpy166II	GTNNAC	4 cut(s)	418, 466, 526, 539
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	4 cut(s)	418, 466, 526, 539
HpyAV	CCTTC	2 cut(s)	215, 573
HpyCH4III	ACNGT	3 cut(s)	91, 121, 337
HpyCH4V	TGCA	3 cut(s)	11, 515, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	232, 316
KpnI	GGTACC	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	55, 454
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	176
LweI	GCATC	2 cut(s)	255, 579
MabI	ACCWGGT	1 cut(s)	508
MaeI	CTAG	2 cut(s)	279, 296
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	57, 456
MboI	GATC	2 cut(s)	55, 454
MboII	GAAGA	5 cut(s)	444, 449, 461, 464, 544
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	4 cut(s)	110, 312, 541, 563
MluCI	AATT	5 cut(s)	14, 233, 246, 368, 480
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	56, 151, 154, 299
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
MslI	CAYNNNNRTG	1 cut(s)	544
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	356, 409, 510
MvaI	CCWGG	2 cut(s)	356, 510
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	55, 454
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	232, 316
NlaIV	GGNNCC	2 cut(s)	334, 561
NmuCI	GTSAC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	225, 292
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	354, 508
PspGI	CCWGG	2 cut(s)	354, 508
PspN4I	GGNNCC	2 cut(s)	334, 561
PspOMI	GGGCCC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	299, 559, 560
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	544
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	55, 454
Sau96I	GGNCC	3 cut(s)	299, 559, 560
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	356, 409, 510
SduI	GDGCHC	4 cut(s)	110, 312, 541, 563
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	2 cut(s)	255, 579
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	14, 233, 246, 368, 480
SsiI	CCGC	2 cut(s)	43, 477
SspMI	CTAG	2 cut(s)	279, 296
StyD4I	CCNGG	3 cut(s)	354, 407, 508
StyI	CCWWGG	3 cut(s)	102, 270, 283
TaaI	ACNGT	3 cut(s)	91, 121, 337
TaqI	TCGA	1 cut(s)	566
TasI	AATT	5 cut(s)	14, 233, 246, 368, 480
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	225, 292
Tru1I	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
Tru9I	TTAA	6 cut(s)	93, 123, 245, 483, 570, 575
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	217
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	3 cut(s)	14, 233, 368
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	279, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.