pycom07g01670

Belongs to the universal ribosomal protein uL1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010216
Physical Location & Seq
Reverse (-)
1316456 .. 1320300
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01670.1

Sequence Viewer

Length: 1053 bp
ATGGCTACAAGCACCACGCCCTCGTCCCTCATGCTAACGTACGCCTCCTCGTACGCGCACCCACATGACCTCACTCCCTCTCTCGTCTCCTTCCAGCCCAAGCCGCTCTTCAAAACCTTCTGCCTCTGCCCGCTCGCTCTAAGGCCTCGAGAGAGAGAACCAAGCAAATGGGCCAATTCCGAGCCTCACCGAGTGGCCGCGGCGGCTCTTACGGCAGAGGCGGAGGTGGAGGAGGATGTGGACGAGAAGGAAGGAGTGAAAGGAGGTGATGGGTCTGTTGCTGTTTCTGTTCCTTCAAAGCCCAAGAAAGGGAAGGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGGTTCTTGGAAATTCAGAAACTGAGGGAAACCAAAAAAGAGTATGAGCTGCAGCCAGCAATCGCTTTGCTGAAAGAAATGACGAGTACGAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAATATAATGACCAACAACTAAGGGCAACTGTAAACCTGCCGAAGGGAACTGGACAGACTGTTAAAGTGGCTGTTCTTACTCAAGGTGAGAGGTTTGATGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAACAGATAAAAGAAGGATTCATGGACTTTGACAAGCTAATTGCTTCACCGGACATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTAGGACCACGAGGGCTCATGCCAAATCCGAAAGCTGGTACTGTCACGCCTAATATACCACAGGCCATAGCAGAATTCAAGCAGGGGAAAGTGGAATATAGAGCAGATAAAACTGGTATAGTTCATTTGCGGTTTGGAAAAGCCGACTTTCCTGAAGAAGACCTTCTCGTGAACTTGCTAGCAGCAGTTAAATCTGTAGAAGCAAATAAACCACCAGGTGCAAAAGGTGTTTACTGGAAGAGTGCACATATATGCTCATCGATGGGGCCTTCCATCCGGTTAAATATAAGGGCGATGCTCGATTTCAAGCTTCCAACAAATGCTTGA

Protein Analysis

351

Amino Acids

38.32

Weight (kDa)

9.25

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 142 - 332 6.2e-62 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 537
AccBSI CCGCTC 2 cut(s) 106, 133
AccII CGCG 2 cut(s) 56, 200
AciI CCGC 8 cut(s) 104, 131, 198, 200, 203, 221, 475, 856
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 3 cut(s) 366, 446, 800
AcuI CTGAAG 2 cut(s) 483, 900
AdeI CACNNNGTG 2 cut(s) 193, 944
AfaI GTAC 4 cut(s) 41, 53, 442, 766
AfiI CCNNNNNNNGG 4 cut(s) 308, 309, 535, 761
AgsI TTSAA 5 cut(s) 112, 297, 331, 805, 1033
AjnI CCWGG 1 cut(s) 940
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 403, 676, 761, 1036
AluI AGCT 4 cut(s) 403, 676, 761, 1036
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 2 cut(s) 91, 330
Alw44I GTGCAC 1 cut(s) 969
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 5 cut(s) 143, 171, 195, 789, 992
ApaLI GTGCAC 1 cut(s) 969
ApeKI GCWGC 4 cut(s) 317, 403, 406, 908
ApoI RAATTY 3 cut(s) 366, 446, 800
Asp700I GAANNNNTTC 1 cut(s) 888
AspA2I CCTAGG 1 cut(s) 715
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 171, 348, 731, 992
AsuHPI GGTGA 4 cut(s) 179, 278, 590, 678
AsuNHI GCTAGC 2 cut(s) 710, 904
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 348, 731
AvrII CCTAGG 1 cut(s) 715
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 744
BauI CACGAG 2 cut(s) 735, 893
BbsI GAAGAC 1 cut(s) 891
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 4 cut(s) 304, 390, 418, 920
BccI CCATC 3 cut(s) 263, 982, 1007
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 942
BcoDI GTCTC 2 cut(s) 91, 330
BfaI CTAG 4 cut(s) 711, 716, 728, 905
BfmI CTRYAG 2 cut(s) 404, 921
BfuAI ACCTGC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 8 cut(s) 104, 198, 201, 204, 318, 404, 407, 909
BlnI CCTAGG 1 cut(s) 715
BlsI GCNGC 8 cut(s) 105, 199, 202, 205, 319, 405, 408, 910
Bme1390I CCNGG 1 cut(s) 942
Bme18I GGWCC 2 cut(s) 348, 731
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 171, 348, 731, 992
BmiI GGNNCC 1 cut(s) 993
BmrFI CCNGG 1 cut(s) 942
BmsI GCATC 2 cut(s) 687, 1011
BmtI GCTAGC 2 cut(s) 714, 908
BpiI GAAGAC 1 cut(s) 891
BpmI CTGGAG 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 558
Bsa29I ATCGAT 1 cut(s) 986
BsaJI CCNNGG 2 cut(s) 198, 715
BsaWI WCCGGW 2 cut(s) 688, 1002
Bsc4I CCNNNNNNNGG 4 cut(s) 308, 309, 535, 761
Bse1I ACTGG 3 cut(s) 547, 844, 965
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 942
BseCI ATCGAT 1 cut(s) 986
BseDI CCNNGG 2 cut(s) 198, 715
BseGI GGATG 2 cut(s) 241, 999
BseLI CCNNNNNNNGG 4 cut(s) 308, 309, 535, 761
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 3 cut(s) 547, 844, 965
BseRI GAGGAG 2 cut(s) 37, 245
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 4 cut(s) 304, 390, 418, 920
Bsh1236I CGCG 2 cut(s) 56, 200
BshFI GGCC 5 cut(s) 145, 173, 197, 791, 994
BshVI ATCGAT 1 cut(s) 986
BsiHKAI GWGCWC 1 cut(s) 973
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 689, 1003
BsiWI CGTACG 2 cut(s) 39, 51
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 4 cut(s) 308, 309, 535, 761
BsmAI GTCTC 2 cut(s) 91, 330
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 5 cut(s) 145, 173, 197, 791, 994
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 744, 973
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 8 cut(s) 104, 131, 198, 200, 203, 221, 475, 856
BspANI GGCC 5 cut(s) 145, 173, 197, 791, 994
BspCNI CTCAG 1 cut(s) 369
BspDI ATCGAT 1 cut(s) 986
BspFNI CGCG 2 cut(s) 56, 200
BspLI GGNNCC 1 cut(s) 993
BspMAI CTGCAG 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 537
BspOI GCTAGC 2 cut(s) 714, 908
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 113
BsrBI CCGCTC 2 cut(s) 106, 133
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 3 cut(s) 547, 844, 965
BssECI CCNNGG 2 cut(s) 198, 715
BssMI GATC 1 cut(s) 487
BssSI CACGAG 2 cut(s) 735, 893
BssT1I CCWWGG 1 cut(s) 715
Bst2BI CACGAG 2 cut(s) 735, 893
Bst2UI CCWGG 1 cut(s) 942
Bst4CI ACNGT 3 cut(s) 523, 553, 769
Bst6I CTCTTC 3 cut(s) 113, 326, 959
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 5 cut(s) 131, 135, 411, 712, 906
BstDEI CTNAG 4 cut(s) 140, 377, 512, 702
BstDSI CCRYGG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 241, 999
BstFNI CGCG 2 cut(s) 56, 200
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 2 cut(s) 91, 330
BstMBI GATC 1 cut(s) 487
BstMWI GCNNNNNNNGC 4 cut(s) 103, 203, 212, 602
BstNI CCWGG 1 cut(s) 942
BstSCI CCNGG 1 cut(s) 940
BstSFI CTRYAG 2 cut(s) 404, 921
BstSLI GKGCMC 1 cut(s) 973
BstUI CGCG 2 cut(s) 56, 200
BstV1I GCAGC 4 cut(s) 304, 390, 418, 920
BstV2I GAAGAC 1 cut(s) 891
BstXI CCANNNNNNTGG 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 986
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 5 cut(s) 145, 173, 197, 791, 994
BsuTUI ATCGAT 1 cut(s) 986
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 1034
BtsCI GGATG 2 cut(s) 241, 999
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 5 cut(s) 131, 135, 411, 712, 906
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 171, 348, 731, 992
Cfr42I CCGCGG 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 986
CsiI ACCWGGT 1 cut(s) 940
Csp6I GTAC 4 cut(s) 40, 52, 441, 765
CviAII CATG 5 cut(s) 31, 65, 661, 694, 745
CviQI GTAC 4 cut(s) 40, 52, 441, 765
DdeI CTNAG 4 cut(s) 140, 377, 512, 702
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
DraIII CACNNNGTG 2 cut(s) 193, 944
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 3 cut(s) 113, 326, 959
EarI CTCTTC 3 cut(s) 113, 326, 959
EciI GGCGGA 2 cut(s) 236, 464
Eco130I CCWWGG 1 cut(s) 715
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 348, 731
Eco57I CTGAAG 2 cut(s) 483, 900
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 940
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 715
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 34, 68, 664, 697, 748
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 873, 905
FaqI GGGAC 1 cut(s) 10
FatI CATG 5 cut(s) 30, 64, 660, 693, 744
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 8 cut(s) 104, 198, 201, 204, 318, 404, 407, 909
FokI GGATG 2 cut(s) 248, 986
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 8 cut(s) 104, 198, 201, 204, 318, 404, 407, 909
FspBI CTAG 4 cut(s) 711, 716, 728, 905
GlaI GCGC 1 cut(s) 57
GluI GCNGC 8 cut(s) 104, 198, 201, 204, 318, 404, 407, 909
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 5 cut(s) 145, 173, 197, 791, 994
HapII CCGG 2 cut(s) 689, 1003
HhaI GCGC 1 cut(s) 58
Hin1II CATG 5 cut(s) 34, 68, 664, 697, 748
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 2 cut(s) 657, 724
HpaII CCGG 2 cut(s) 689, 1003
HphI GGTGA 4 cut(s) 179, 278, 590, 678
Hpy166II GTNNAC 5 cut(s) 241, 526, 898, 958, 971
Hpy188I TCNGA 3 cut(s) 181, 372, 756
Hpy188III TCNNGA 3 cut(s) 149, 878, 895
Hpy8I GTNNAC 5 cut(s) 241, 526, 898, 958, 971
HpyCH4III ACNGT 3 cut(s) 523, 553, 769
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 320, 406, 947, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 203, 212, 602
HpyF3I CTNAG 4 cut(s) 140, 377, 512, 702
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 5 cut(s) 34, 68, 664, 697, 748
HspAI GCGC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 487
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 4 cut(s) 304, 390, 418, 920
LweI GCATC 2 cut(s) 687, 1011
MabI ACCWGGT 1 cut(s) 940
MaeI CTAG 4 cut(s) 711, 716, 728, 905
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 769
MalI GATC 1 cut(s) 489
MbiI CCGCTC 2 cut(s) 106, 133
MboI GATC 1 cut(s) 487
MboII GAAGA 5 cut(s) 100, 343, 893, 896, 976
MhlI GDGCHC 2 cut(s) 744, 973
MluCI AATT 5 cut(s) 175, 366, 446, 678, 800
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 3 cut(s) 555, 915, 1007
MslI CAYNNNNRTG 2 cut(s) 63, 976
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 2 cut(s) 689, 1003
MspR9I CCNGG 1 cut(s) 942
MvaI CCWGG 1 cut(s) 942
MvnI CGCG 2 cut(s) 56, 200
MwoI GCNNNNNNNGC 4 cut(s) 103, 203, 212, 602
NdeII GATC 1 cut(s) 487
NheI GCTAGC 2 cut(s) 710, 904
NlaIII CATG 5 cut(s) 34, 68, 664, 697, 748
NlaIV GGNNCC 1 cut(s) 993
NmuCI GTSAC 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 147
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 2 cut(s) 657, 724
Pfl23II CGTACG 2 cut(s) 39, 51
PkrI GCNGC 8 cut(s) 105, 199, 202, 205, 319, 405, 408, 910
Psp6I CCWGG 1 cut(s) 940
PspGI CCWGG 1 cut(s) 940
PspLI CGTACG 2 cut(s) 39, 51
PspN4I GGNNCC 1 cut(s) 993
PspPI GGNCC 4 cut(s) 171, 348, 731, 992
PstI CTGCAG 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 376
RsaI GTAC 4 cut(s) 41, 53, 442, 766
RsaNI GTAC 4 cut(s) 40, 52, 441, 765
RseI CAYNNNNRTG 2 cut(s) 63, 976
SacII CCGCGG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 555, 915, 1007
SatI GCNGC 8 cut(s) 104, 198, 201, 204, 318, 404, 407, 909
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 4 cut(s) 171, 348, 731, 992
ScrFI CCNGG 1 cut(s) 942
SduI GDGCHC 2 cut(s) 744, 973
SexAI ACCWGGT 1 cut(s) 940
SfaNI GCATC 2 cut(s) 687, 1011
SfcI CTRYAG 2 cut(s) 404, 921
Sfr274I CTCGAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 2 cut(s) 348, 731
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 63, 976
SmlI CTYRAG 2 cut(s) 147, 573
SmoI CTYRAG 2 cut(s) 147, 573
Sse9I AATT 5 cut(s) 175, 366, 446, 678, 800
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 8 cut(s) 104, 131, 198, 200, 203, 221, 475, 856
SspMI CTAG 4 cut(s) 711, 716, 728, 905
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 940
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 3 cut(s) 523, 553, 769
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 148, 986, 1026
TasI AATT 5 cut(s) 175, 366, 446, 678, 800
TauI GCSGC 4 cut(s) 106, 200, 203, 206
TfiI GAWTC 2 cut(s) 657, 724
Tru1I TTAA 3 cut(s) 555, 915, 1007
Tru9I TTAA 3 cut(s) 555, 915, 1007
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 4 cut(s) 317, 403, 406, 908
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 606, 649, 839
VneI GTGCAC 1 cut(s) 969
VpaK11BI GGWCC 2 cut(s) 348, 731
XagI CCTNNNNNAGG 1 cut(s) 533
XapI RAATTY 3 cut(s) 366, 446, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XhoI CTCGAG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 4 cut(s) 711, 716, 728, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.