MD07G1022000.v1.1

Belongs to the universal ribosomal protein uL1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
1856762 .. 1860954
4193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1022000.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGGCGACAAGCACCACGCCTTCGTCCCTCATGCTAACGTACGCCTCCTCTTACGCGCACCCACATGACCTCACTCCCTCTCTCGTCTCCTTCCAGCCCAAGCCCCTCTTCAAAACCTTCTGCCTCTGCCCGCTGGCTCTAAGGCCTCGAGAGAGAGAACCAAGCAAATGGTCCAATTCCGAGCCTCACCGAGTGGCCGCGGCGGCTCTGACGGCGGAGGCAGAGGTGGAGGAGGATGTGGACGAGAAGGAAGGAGTGAAAGGAGGTGATGGGTCTGTTGCTGTTGCTGTTTCTGTTCCTTCAAAGCCCAAGAAAGGGAAGGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAGAAACTGAGGGAAACCAAAAAAGAGTATGAGCTGCAGCCAGCACTCGCTTTACTGAAAGAAATGACGAGTACGAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAACATTGATCCAAAGTATAATGACCAACAGCTAAGGGCAACTGTAAACCTGCCCAAGGGAACTGGACAGACTGTTAAAGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGACGAAGCAAAAAATGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAACAGATAAAAGAAGGATTCATGGAATTTGACAAGCTAATTGCTTCGCCGGATATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTAGGACCACGAGGGCTCATGCCAAATCCGAAAGCTGGTACTGTCACGCCTAATATACCACAGGCCATAGCAGAATTCAAGCAGGGGAAAGTTGAATATAGAGCAGATAAAACTGGTATAGTTCATTTGCGGTTTGGAAAAGCCGACTTTCCTGAAGAAGACCTTCTCGTGAACTTGCTAGCAGCAGTTAAATCGGTAGAAGCAAATAAACCACCAGGTGCAAAAGGTGTTTACTGGAAGAGTGCACATATATGCTCGTCAATGGGGCCTTCCATCCGGTTAAATATAAGGGCGATGCTCGATTTCAAGCTTCCAACAAATGCTTGA

Protein Analysis

353

Amino Acids

38.52

Weight (kDa)

9.25

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L1 PF00687 144 - 334 7e-62 Ribosomal protein L1p/L10e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
AccII CGCG 2 cut(s) 56, 200
AciI CCGC 7 cut(s) 131, 198, 200, 203, 215, 481, 862
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 4 cut(s) 372, 452, 671, 806
AcuI CTGAAG 2 cut(s) 489, 906
AdeI CACNNNGTG 2 cut(s) 193, 950
AfaI GTAC 3 cut(s) 41, 448, 772
AfiI CCNNNNNNNGG 4 cut(s) 314, 315, 541, 767
AgsI TTSAA 6 cut(s) 112, 303, 337, 811, 827, 1039
AjnI CCWGG 1 cut(s) 946
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 5 cut(s) 409, 517, 682, 767, 1042
AluI AGCT 5 cut(s) 409, 517, 682, 767, 1042
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 2 cut(s) 91, 336
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 4 cut(s) 143, 195, 795, 998
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 4 cut(s) 323, 409, 412, 914
ApoI RAATTY 4 cut(s) 372, 452, 671, 806
Asp700I GAANNNNTTC 1 cut(s) 894
AspA2I CCTAGG 1 cut(s) 721
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 171, 354, 737, 998
AsuHPI GGTGA 3 cut(s) 179, 278, 596
AsuNHI GCTAGC 2 cut(s) 716, 910
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 3 cut(s) 171, 354, 737
AvrII CCTAGG 1 cut(s) 721
AxyI CCTNAGG 1 cut(s) 708
BaeGI GKGCMC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 750
BauI CACGAG 2 cut(s) 741, 899
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 4 cut(s) 310, 396, 424, 926
BccI CCATC 2 cut(s) 263, 1013
BceAI ACGGC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciT130I CCWGG 1 cut(s) 948
BcoDI GTCTC 2 cut(s) 91, 336
BfaI CTAG 4 cut(s) 717, 722, 734, 911
BfmI CTRYAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 7 cut(s) 198, 201, 204, 324, 410, 413, 915
BlnI CCTAGG 1 cut(s) 721
BlsI GCNGC 7 cut(s) 199, 202, 205, 325, 411, 414, 916
Bme1390I CCNGG 1 cut(s) 948
Bme18I GGWCC 3 cut(s) 171, 354, 737
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 171, 354, 737, 998
BmiI GGNNCC 1 cut(s) 999
BmrFI CCNGG 1 cut(s) 948
BmsI GCATC 2 cut(s) 693, 1017
BmtI GCTAGC 2 cut(s) 720, 914
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 633
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 198, 540, 721
BsaWI WCCGGW 1 cut(s) 1008
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 315, 541, 767
Bse1I ACTGG 3 cut(s) 553, 850, 971
Bse21I CCTNAGG 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 3 cut(s) 198, 540, 721
BseGI GGATG 2 cut(s) 241, 1005
BseLI CCNNNNNNNGG 4 cut(s) 314, 315, 541, 767
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 553, 850, 971
BseRI GAGGAG 2 cut(s) 37, 245
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 4 cut(s) 310, 396, 424, 926
Bsh1236I CGCG 2 cut(s) 56, 200
BshFI GGCC 4 cut(s) 145, 197, 797, 1000
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 695, 1009
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 4 cut(s) 314, 315, 541, 767
BsmAI GTCTC 2 cut(s) 91, 336
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 4 cut(s) 145, 197, 797, 1000
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 750, 979
Bsp143I GATC 1 cut(s) 493
BspACI CCGC 7 cut(s) 131, 198, 200, 203, 215, 481, 862
BspANI GGCC 4 cut(s) 145, 197, 797, 1000
BspCNI CTCAG 1 cut(s) 375
BspFNI CGCG 2 cut(s) 56, 200
BspLI GGNNCC 1 cut(s) 999
BspMAI CTGCAG 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 543
BspOI GCTAGC 2 cut(s) 720, 914
BspPI GGATC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 3 cut(s) 553, 850, 971
BssECI CCNNGG 3 cut(s) 198, 540, 721
BssMI GATC 1 cut(s) 493
BssSI CACGAG 2 cut(s) 741, 899
BssT1I CCWWGG 2 cut(s) 540, 721
Bst2BI CACGAG 2 cut(s) 741, 899
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 3 cut(s) 529, 559, 775
Bst6I CTCTTC 3 cut(s) 113, 332, 965
BstAPI GCANNNNNTGC 1 cut(s) 608
BstC8I GCNNGC 5 cut(s) 131, 135, 417, 718, 912
BstDEI CTNAG 4 cut(s) 140, 383, 518, 708
BstDSI CCRYGG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 2 cut(s) 241, 1005
BstFNI CGCG 2 cut(s) 56, 200
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 2 cut(s) 91, 336
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 608
BstNI CCWGG 1 cut(s) 948
BstSCI CCNGG 1 cut(s) 946
BstSFI CTRYAG 1 cut(s) 410
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 2 cut(s) 56, 200
BstV1I GCAGC 4 cut(s) 310, 396, 424, 926
BstV2I GAAGAC 1 cut(s) 897
BstXI CCANNNNNNTGG 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 4 cut(s) 145, 197, 797, 1000
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 1040
BtsCI GGATG 2 cut(s) 241, 1005
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 5 cut(s) 131, 135, 417, 718, 912
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 171, 354, 737, 998
Cfr42I CCGCGG 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 946
Csp6I GTAC 3 cut(s) 40, 447, 771
CviAII CATG 4 cut(s) 31, 65, 667, 751
CviQI GTAC 3 cut(s) 40, 447, 771
DdeI CTNAG 4 cut(s) 140, 383, 518, 708
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
DraIII CACNNNGTG 2 cut(s) 193, 950
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 3 cut(s) 113, 332, 965
EarI CTCTTC 3 cut(s) 113, 332, 965
EciI GGCGGA 2 cut(s) 230, 470
Eco130I CCWWGG 2 cut(s) 540, 721
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 750
Eco47I GGWCC 3 cut(s) 171, 354, 737
Eco57I CTGAAG 2 cut(s) 489, 906
Eco81I CCTNAGG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 998
EcoRI GAATTC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 540, 721
EcoT38I GRGCYC 1 cut(s) 750
ErhI CCWWGG 2 cut(s) 540, 721
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 4 cut(s) 34, 68, 670, 754
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 879, 911
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 30, 64, 666, 750
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 7 cut(s) 198, 201, 204, 324, 410, 413, 915
FokI GGATG 2 cut(s) 248, 992
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 7 cut(s) 198, 201, 204, 324, 410, 413, 915
FspBI CTAG 4 cut(s) 717, 722, 734, 911
GlaI GCGC 1 cut(s) 57
GluI GCNGC 7 cut(s) 198, 201, 204, 324, 410, 413, 915
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 4 cut(s) 145, 197, 797, 1000
HapII CCGG 2 cut(s) 695, 1009
HhaI GCGC 1 cut(s) 58
Hin1II CATG 4 cut(s) 34, 68, 670, 754
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 3 cut(s) 363, 663, 730
HpaII CCGG 2 cut(s) 695, 1009
HphI GGTGA 3 cut(s) 179, 278, 596
Hpy166II GTNNAC 5 cut(s) 241, 532, 904, 964, 977
Hpy188I TCNGA 4 cut(s) 181, 210, 378, 762
Hpy188III TCNNGA 3 cut(s) 149, 884, 901
Hpy8I GTNNAC 5 cut(s) 241, 532, 904, 964, 977
HpyCH4III ACNGT 3 cut(s) 529, 559, 775
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 326, 412, 953, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 608
HpyF3I CTNAG 4 cut(s) 140, 383, 518, 708
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 4 cut(s) 34, 68, 670, 754
HspAI GCGC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 4 cut(s) 310, 396, 424, 926
LweI GCATC 2 cut(s) 693, 1017
MabI ACCWGGT 1 cut(s) 946
MaeI CTAG 4 cut(s) 717, 722, 734, 911
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 775
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 5 cut(s) 100, 349, 899, 902, 982
MhlI GDGCHC 2 cut(s) 750, 979
MluCI AATT 6 cut(s) 175, 372, 452, 671, 684, 806
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 3 cut(s) 561, 921, 1013
MslI CAYNNNNRTG 2 cut(s) 63, 982
MspA1I CMGCKG 2 cut(s) 133, 200
MspI CCGG 2 cut(s) 695, 1009
MspR9I CCNGG 1 cut(s) 948
MvaI CCWGG 1 cut(s) 948
MvnI CGCG 2 cut(s) 56, 200
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 608
NdeII GATC 1 cut(s) 493
NheI GCTAGC 2 cut(s) 716, 910
NlaIII CATG 4 cut(s) 34, 68, 670, 754
NlaIV GGNNCC 1 cut(s) 999
NmuCI GTSAC 1 cut(s) 775
PaeR7I CTCGAG 1 cut(s) 147
PceI AGGCCT 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 3 cut(s) 363, 663, 730
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 7 cut(s) 199, 202, 205, 325, 411, 414, 916
Psp6I CCWGG 1 cut(s) 946
PspGI CCWGG 1 cut(s) 946
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 999
PspPI GGNCC 4 cut(s) 171, 354, 737, 998
PstI CTGCAG 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 382
RsaI GTAC 3 cut(s) 41, 448, 772
RsaNI GTAC 3 cut(s) 40, 447, 771
RseI CAYNNNNRTG 2 cut(s) 63, 982
SacII CCGCGG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 561, 921, 1013
SatI GCNGC 7 cut(s) 198, 201, 204, 324, 410, 413, 915
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 4 cut(s) 171, 354, 737, 998
ScrFI CCNGG 1 cut(s) 948
SduI GDGCHC 2 cut(s) 750, 979
SexAI ACCWGGT 1 cut(s) 946
SfaNI GCATC 2 cut(s) 693, 1017
SfcI CTRYAG 1 cut(s) 410
Sfr274I CTCGAG 1 cut(s) 147
Sfr303I CCGCGG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 3 cut(s) 171, 354, 737
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 63, 982
SmlI CTYRAG 2 cut(s) 147, 579
SmoI CTYRAG 2 cut(s) 147, 579
Sse9I AATT 6 cut(s) 175, 372, 452, 671, 684, 806
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 7 cut(s) 131, 198, 200, 203, 215, 481, 862
SspMI CTAG 4 cut(s) 717, 722, 734, 911
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 946
StyI CCWWGG 2 cut(s) 540, 721
TaaI ACNGT 3 cut(s) 529, 559, 775
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 148, 1032
TasI AATT 6 cut(s) 175, 372, 452, 671, 684, 806
TauI GCSGC 3 cut(s) 200, 203, 206
TfiI GAWTC 3 cut(s) 363, 663, 730
Tru1I TTAA 3 cut(s) 561, 921, 1013
Tru9I TTAA 3 cut(s) 561, 921, 1013
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 4 cut(s) 323, 409, 412, 914
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 2 cut(s) 655, 845
VneI GTGCAC 1 cut(s) 975
VpaK11BI GGWCC 3 cut(s) 171, 354, 737
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 4 cut(s) 372, 452, 671, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 721
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 4 cut(s) 717, 722, 734, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.