Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Forward (+)

35659778 .. 35664637

Gene Structure 4860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1302200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTACAAGCACCACACCCTCGTCCCTCATGCTAACGTACGCCTCCTCCTACGGGCACCCACAAGACATCACTCCCTCCCTCGTCTCCTTCCAGCCCAAGCCCCTCTTCAAAACCTTCTGCCTCTGCCCGCTGGCTCTGAGGCCTCGCGAGATAAAACCAAGCAAATGGGCCAATTCCGAGCCTCACCGAGTGCCCGCGGCGGCTCTGACGGCGGAGGCAGAGGTGGCTGAGGATGTGGATGAGAACGAAGAAGTGAAAGGAGGTGATGGGTCTGCTGCTGTTGCTGTTTCTTCAAAGCCCAAGAAGGGGAAGGCTGCATTGCTTTTGAAGAGAGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAGAAATTGAGGGAAACCAAAAAAGAGTATGCGCTGCAGCCTGCCATTGCTTTACTGAAAGAAATGACGAATACGAAATTTGTAGAAACTGCTGAAGCCCATTTCCGCCTCAATATTGACCCAAAATATAATGACCAACAGCTAAGAGCAACTGTAAACCTGCCCAAGGGAACCGGACAGACTGTTAAAGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGATGAAGCGAAAAATGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAACAGATAAAGGAAGGGTTCATGGAATTTGACAAGCTAATTGCTTCACCGGATATGATGCCTAAGGTTGCTAGCCTAGGAAAGATTCTAGGACCACGAGGGCTCATGCCAAACCCGAAAGCTGGTACTGTCACGCCTAATATTCCACAGGCCATAGCAGAATTCAAGCAGGGGAAAGTTGAATATAGAGCAGATAAAACTGGTATAGTTCATTTGCGTTTTGGAAAAGCTGACTTTTCTGAAGAAGACCTTCTCGTAAACTTGCTTGCAGCAGTTAAATCAGTAGAAGCAAATAAGCCACCAGGTGCAAAAGGTGTTTACTGGAAGAGTGCACACATATGCTCTTCGATGGGGCCTTCCATCCGGTTAAATATAAGGGAGATGCTCGATTTCAAGCTTCCGACAAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

351

Amino Acids

38.25

Weight (kDa)

9.25

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L1	PF00687	142 - 332	3.1e-62	Ribosomal protein L1p/L10e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	2 cut(s)	150, 200
AciI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
AcsI	RAATTY	4 cut(s)	366, 446, 665, 800
AcuI	CTGAAG	2 cut(s)	483, 900
AdeI	CACNNNGTG	2 cut(s)	193, 944
AfaI	GTAC	2 cut(s)	41, 766
AfiI	CCNNNNNNNGG	5 cut(s)	54, 308, 309, 535, 761
AgsI	TTSAA	6 cut(s)	112, 297, 331, 805, 821, 1033
AjnI	CCWGG	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	511, 676, 761, 869, 1036
AluI	AGCT	5 cut(s)	511, 676, 761, 869, 1036
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	2 cut(s)	91, 330
Alw44I	GTGCAC	1 cut(s)	969
AoxI	GGCC	4 cut(s)	143, 171, 789, 992
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	5 cut(s)	278, 317, 403, 406, 908
ApoI	RAATTY	4 cut(s)	366, 446, 665, 800
Asp700I	GAANNNNTTC	1 cut(s)	888
AspA2I	CCTAGG	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	4 cut(s)	171, 348, 731, 992
AsuHPI	GGTGA	4 cut(s)	179, 278, 590, 678
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	348, 731
AvrII	CCTAGG	1 cut(s)	715
AxyI	CCTNAGG	1 cut(s)	702
BaeGI	GKGCMC	3 cut(s)	60, 198, 973
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	744
BauI	CACGAG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	973
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	265, 304, 390, 418, 920
BccI	CCATC	3 cut(s)	263, 982, 1007
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	942
BcoDI	GTCTC	2 cut(s)	91, 330
BfaI	CTAG	3 cut(s)	711, 716, 728
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	7 cut(s)	201, 204, 279, 318, 404, 407, 909
BlnI	CCTAGG	1 cut(s)	715
BlsI	GCNGC	7 cut(s)	202, 205, 280, 319, 405, 408, 910
Bme1390I	CCNGG	1 cut(s)	942
Bme18I	GGWCC	2 cut(s)	348, 731
BmgT120I	GGNCC	4 cut(s)	171, 348, 731, 992
BmiI	GGNNCC	3 cut(s)	59, 541, 993
BmrFI	CCNGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	687, 1011
BmtI	GCTAGC	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	198, 534, 715
BsaWI	WCCGGW	3 cut(s)	542, 688, 1002
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 308, 309, 535, 761
Bse1I	ACTGG	2 cut(s)	844, 965
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	2 cut(s)	320, 414
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	3 cut(s)	198, 534, 715
BseGI	GGATG	3 cut(s)	241, 247, 999
BseLI	CCNNNNNNNGG	5 cut(s)	54, 308, 309, 535, 761
BseMI	GCAATG	2 cut(s)	320, 414
BseMII	CTCAG	2 cut(s)	131, 222
BseNI	ACTGG	2 cut(s)	844, 965
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	3 cut(s)	60, 198, 973
BseXI	GCAGC	5 cut(s)	265, 304, 390, 418, 920
Bsh1236I	CGCG	2 cut(s)	150, 200
BshFI	GGCC	4 cut(s)	145, 173, 791, 994
BshNI	GGYRCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	973
BsiSI	CCGG	3 cut(s)	543, 689, 1003
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	5 cut(s)	54, 308, 309, 535, 761
BsmAI	GTCTC	2 cut(s)	91, 330
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	145, 173, 791, 994
Bsp1286I	GDGCHC	4 cut(s)	60, 198, 744, 973
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
BspANI	GGCC	4 cut(s)	145, 173, 791, 994
BspCNI	CTCAG	2 cut(s)	132, 223
BspFNI	CGCG	2 cut(s)	150, 200
BspLI	GGNNCC	3 cut(s)	59, 541, 993
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	537
BspOI	GCTAGC	1 cut(s)	714
BspQI	GCTCTTC	1 cut(s)	988
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	320, 414
BsrI	ACTGG	2 cut(s)	844, 965
BssECI	CCNNGG	3 cut(s)	198, 534, 715
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	534, 715
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	3 cut(s)	523, 553, 769
Bst6I	CTCTTC	4 cut(s)	113, 326, 959, 988
BstC8I	GCNNGC	6 cut(s)	131, 135, 198, 411, 712, 906
BstDEI	CTNAG	4 cut(s)	140, 231, 512, 702
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	241, 247, 999
BstFNI	CGCG	2 cut(s)	150, 200
BstHHI	GCGC	1 cut(s)	403
BstMAI	GTCTC	2 cut(s)	91, 330
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 227, 284, 602
BstNI	CCWGG	1 cut(s)	942
BstSCI	CCNGG	1 cut(s)	940
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	3 cut(s)	60, 198, 973
BstUI	CGCG	2 cut(s)	150, 200
BstV1I	GCAGC	5 cut(s)	265, 304, 390, 418, 920
BstV2I	GAAGAC	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	4 cut(s)	145, 173, 791, 994
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	241, 247, 999
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	6 cut(s)	131, 135, 198, 411, 712, 906
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	4 cut(s)	171, 348, 731, 992
Cfr42I	CCGCGG	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	940
Csp6I	GTAC	2 cut(s)	40, 765
CviAII	CATG	3 cut(s)	31, 661, 745
CviQI	GTAC	2 cut(s)	40, 765
DdeI	CTNAG	4 cut(s)	140, 231, 512, 702
DraIII	CACNNNGTG	2 cut(s)	193, 944
Eam1104I	CTCTTC	4 cut(s)	113, 326, 959, 988
EarI	CTCTTC	4 cut(s)	113, 326, 959, 988
EciI	GGCGGA	2 cut(s)	230, 464
Eco130I	CCWWGG	2 cut(s)	534, 715
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	744
Eco47I	GGWCC	2 cut(s)	348, 731
Eco57I	CTGAAG	2 cut(s)	483, 900
Eco81I	CCTNAGG	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	992
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	2 cut(s)	534, 715
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	2 cut(s)	534, 715
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	34, 664, 748
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 873, 905
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	30, 660, 744
FauI	CCCGC	2 cut(s)	138, 205
FauNDI	CATATG	1 cut(s)	977
Fnu4HI	GCNGC	7 cut(s)	201, 204, 279, 318, 404, 407, 909
FokI	GGATG	3 cut(s)	248, 254, 986
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	7 cut(s)	201, 204, 279, 318, 404, 407, 909
FspBI	CTAG	3 cut(s)	711, 716, 728
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	7 cut(s)	201, 204, 279, 318, 404, 407, 909
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	145, 173, 791, 994
HapII	CCGG	3 cut(s)	543, 689, 1003
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	34, 664, 748
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	1034
HinfI	GANTC	2 cut(s)	357, 724
HpaII	CCGG	3 cut(s)	543, 689, 1003
HphI	GGTGA	4 cut(s)	179, 278, 590, 678
Hpy166II	GTNNAC	4 cut(s)	526, 898, 958, 971
Hpy188I	TCNGA	6 cut(s)	141, 181, 210, 372, 880, 1041
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	4 cut(s)	526, 898, 958, 971
HpyAV	CCTTC	7 cut(s)	100, 127, 301, 307, 647, 899, 1005
HpyCH4III	ACNGT	3 cut(s)	523, 553, 769
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	320, 406, 908, 947, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 227, 284, 602
HpyF3I	CTNAG	4 cut(s)	140, 231, 512, 702
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	34, 664, 748
HspAI	GCGC	1 cut(s)	401
KspI	CCGCGG	1 cut(s)	201
LguI	GCTCTTC	1 cut(s)	988
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	5 cut(s)	265, 304, 390, 418, 920
LweI	GCATC	2 cut(s)	687, 1011
MabI	ACCWGGT	1 cut(s)	940
MaeI	CTAG	3 cut(s)	711, 716, 728
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	769
MboII	GAAGA	8 cut(s)	100, 263, 285, 343, 893, 896, 975, 976
MhlI	GDGCHC	4 cut(s)	60, 198, 744, 973
MluCI	AATT	7 cut(s)	175, 366, 374, 446, 665, 678, 800
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	3 cut(s)	555, 915, 1007
MslI	CAYNNNNRTG	1 cut(s)	976
MspA1I	CMGCKG	2 cut(s)	133, 200
MspI	CCGG	3 cut(s)	543, 689, 1003
MspR9I	CCNGG	1 cut(s)	942
MvaI	CCWGG	1 cut(s)	942
MvnI	CGCG	2 cut(s)	150, 200
MwoI	GCNNNNNNNGC	4 cut(s)	212, 227, 284, 602
NdeI	CATATG	1 cut(s)	977
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	3 cut(s)	34, 664, 748
NlaIV	GGNNCC	3 cut(s)	59, 541, 993
NmuCI	GTSAC	1 cut(s)	769
NruI	TCGCGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	988
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	2 cut(s)	357, 724
Pfl23II	CGTACG	1 cut(s)	39
PkrI	GCNGC	7 cut(s)	202, 205, 280, 319, 405, 408, 910
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	59, 541, 993
PspPI	GGNCC	4 cut(s)	171, 348, 731, 992
PstI	CTGCAG	1 cut(s)	408
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	2 cut(s)	41, 766
RsaNI	GTAC	2 cut(s)	40, 765
RseI	CAYNNNNRTG	1 cut(s)	976
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	988
SaqAI	TTAA	3 cut(s)	555, 915, 1007
SatI	GCNGC	7 cut(s)	201, 204, 279, 318, 404, 407, 909
Sau96I	GGNCC	4 cut(s)	171, 348, 731, 992
ScrFI	CCNGG	1 cut(s)	942
SduI	GDGCHC	4 cut(s)	60, 198, 744, 973
SexAI	ACCWGGT	1 cut(s)	940
SfaNI	GCATC	2 cut(s)	687, 1011
SfcI	CTRYAG	1 cut(s)	404
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	348, 731
SmiMI	CAYNNNNRTG	1 cut(s)	976
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	7 cut(s)	175, 366, 374, 446, 665, 678, 800
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	6 cut(s)	131, 198, 200, 203, 215, 475
SspI	AATATT	2 cut(s)	484, 781
SspMI	CTAG	3 cut(s)	711, 716, 728
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	940
StyI	CCWWGG	2 cut(s)	534, 715
TaaI	ACNGT	3 cut(s)	523, 553, 769
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	986, 1026
TasI	AATT	7 cut(s)	175, 366, 374, 446, 665, 678, 800
TauI	GCSGC	2 cut(s)	203, 206
TfiI	GAWTC	2 cut(s)	357, 724
Tru1I	TTAA	3 cut(s)	555, 915, 1007
Tru9I	TTAA	3 cut(s)	555, 915, 1007
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	5 cut(s)	278, 317, 403, 406, 908
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	3 cut(s)	606, 649, 839
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	2 cut(s)	348, 731
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	4 cut(s)	366, 446, 665, 800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmaJI	CCTAGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	3 cut(s)	711, 716, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.