Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2161514 .. 2167478

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTACTAGTACCACACCCTCATCCCTCATGCTAACGTACGCCTCCTCCTCTGTGCACCCACAAGACTTCACTCCGTCGCTCGTCTCCTTCAAGCCCAAGCCGCTCTTTAAAACTTTTTGTCTCTGCCCACTGGGTTTGAGGCCTAGAGAGAGAAGACCAAGCAAGTGGGTCAATTTGAGTTTGTTAAAGGAAGCCAAGTCTGAGCCTTACCCTGTCGCAGCGGCTGCTTTGACTGCTGAGGCAGAGGTGGCTGAGGATGTGGCTGAGGATGAAGAAGTAAAAGGCGATAGTTCTGTTACTGTTGCTGTTCCAAAGCCCAAGAAAGGGAAGGCCGCATTGCTTTTAAAGAGGGACAGAACAAGGTCCAAAAGATTCTTGGAAATTCAGAAATTGAGGGAAACCAAAAAAGAGTATGAGCTGCAACCAGCAATAGCTTTACTGAAAGAAATGACCAATACAAAATTTGTAGAAACTGCTGAAGCTCATTTCCGCCTCAATATTGACCCAAAATATAATGACCAACAGCTAAGGGCAACTGTAAACCTGCCCAAGGGAACTGGACAGACTGTTAAAGTGGCTGTTCTTACTCAAGGTGAAAGGTTTGACGAAGCAAAAAGTGCTGGAGCAGATTTGGTTGGTGGAGATGATTTGATACAACAGATAAAAGAAGGATTCATGGAATTTGACAAGTTAATTGCTTCACCAGATATGATGCCCAAGGTCGCTAGTCTAGGAAAGATTCTAGGACCACGAGGGCTCATGCCAAATCCGAAAGCTGGTACTGTAACGCCTAATATACCTCAGGCCATAGCAGAATTCAAGCAGGGGAAAGTGGAATACAGAGCAGATAAAACTGGTATAGTTCATTTACGTTTTGGAAAAGCTGACTTTCCTGAGGAAGACCTTCTCGTAAACTTGCTTGCCGCAGTGAAATCGGTAGAAACAAATAAGCCACCAGGTGCGAAGGGTGTTTACTGGAAAAGTGCACATATATGCTCATCAATGGGTCCTTCGATTCGGTTAAATATAAGGGAGATGCTCGATTTCAAGCTTCCAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

356

Amino Acids

39.07

Weight (kDa)

9.3

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63490 AT3G63490
fragaria_vesca	FvH4_7g01650 FvH4_7g01650
malus_domestica	MD02G1302000.v1.1 MD02G1302200.v1.1 MD07G1022000.v1.1
prunus_persica	Prupe.2G022100_v2.0.a1
pyrus_communis	pycom02g25420 pycom07g01670
rosa_chinensis	RchiOBHm_Chr1g0317921
rosa_laevigata	RLG00000030576
rosa_multiflora	Rmu_co8493655.1_g000001 Rmu_ssc0000008.1_g000047
rosa_roxburghii	Rroxscaffold_4G00330120
rosa_rugosa	Rorug01G0018600
rosa_samantha	Rh1AG030200 Rh1BG026300 Rh1CG028800 Rh1DG041300
rosa_wichuraiana	Rw1G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	5 cut(s)	104, 224, 336, 493, 927
AcsI	RAATTY	4 cut(s)	384, 464, 683, 818
AcuI	CTGAAG	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	962
AfaI	GTAC	3 cut(s)	13, 41, 784
AfiI	CCNNNNNNNGG	4 cut(s)	326, 327, 553, 779
AgsI	TTSAA	3 cut(s)	94, 823, 1051
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	958
AluBI	AGCT	7 cut(s)	421, 437, 485, 529, 779, 887, 1054
AluI	AGCT	7 cut(s)	421, 437, 485, 529, 779, 887, 1054
Alw21I	GWGCWC	2 cut(s)	60, 991
Alw26I	GTCTC	2 cut(s)	91, 128
Alw44I	GTGCAC	2 cut(s)	56, 987
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	143, 333, 807
ApaLI	GTGCAC	2 cut(s)	56, 987
ApeKI	GCWGC	3 cut(s)	221, 227, 421
ApoI	RAATTY	4 cut(s)	384, 464, 683, 818
Asp700I	GAANNNNTTC	1 cut(s)	906
AspS9I	GGNCC	3 cut(s)	366, 749, 1010
AsuHPI	GGTGA	2 cut(s)	608, 696
AvaII	GGWCC	3 cut(s)	366, 749, 1010
AxyI	CCTNAGG	2 cut(s)	804, 897
BaeGI	GKGCMC	2 cut(s)	60, 991
BanII	GRGCYC	1 cut(s)	762
BarI	GAAGNNNNNNTAC	2 cut(s)	959, 991
BauI	CACGAG	1 cut(s)	753
BbsI	GAAGAC	2 cut(s)	163, 909
Bbv12I	GWGCWC	2 cut(s)	60, 991
BbvCI	CCTCAGC	3 cut(s)	240, 255, 267
BbvI	GCAGC	3 cut(s)	214, 233, 408
BcgI	CGANNNNNNTGC	2 cut(s)	918, 952
BciT130I	CCWGG	1 cut(s)	960
BcoDI	GTCTC	2 cut(s)	91, 128
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	5 cut(s)	9, 147, 729, 734, 746
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	7 cut(s)	104, 222, 225, 228, 336, 422, 927
BlsI	GCNGC	7 cut(s)	105, 223, 226, 229, 337, 423, 928
Bme1390I	CCNGG	1 cut(s)	960
Bme18I	GGWCC	3 cut(s)	366, 749, 1010
BmgT120I	GGNCC	3 cut(s)	366, 749, 1010
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	1 cut(s)	960
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	705, 1029
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	163, 909
BpmI	CTGGAG	1 cut(s)	645
Bpu10I	CCTNAGC	4 cut(s)	240, 255, 267, 530
BpuEI	CTTGAG	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	552, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 327, 553, 779
Bse1I	ACTGG	4 cut(s)	138, 565, 862, 983
Bse21I	CCTNAGG	2 cut(s)	804, 897
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	552, 720
BseGI	GGATG	3 cut(s)	23, 265, 277
BseLI	CCNNNNNNNGG	4 cut(s)	326, 327, 553, 779
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	6 cut(s)	195, 231, 246, 258, 818, 888
BseNI	ACTGG	4 cut(s)	138, 565, 862, 983
BseRI	GAGGAG	2 cut(s)	37, 40
BseSI	GKGCMC	2 cut(s)	60, 991
BseXI	GCAGC	3 cut(s)	214, 233, 408
BshFI	GGCC	3 cut(s)	145, 335, 809
BsiHKAI	GWGCWC	2 cut(s)	60, 991
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	326, 327, 553, 779
BsmAI	GTCTC	2 cut(s)	91, 128
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	145, 335, 809
Bsp1286I	GDGCHC	3 cut(s)	60, 762, 991
BspACI	CCGC	5 cut(s)	104, 224, 336, 493, 927
BspANI	GGCC	3 cut(s)	145, 335, 809
BspCNI	CTCAG	6 cut(s)	196, 232, 247, 259, 817, 889
BspLI	GGNNCC	1 cut(s)	1011
BspMI	ACCTGC	1 cut(s)	555
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	4 cut(s)	138, 565, 862, 983
BssECI	CCNNGG	2 cut(s)	552, 720
BssSI	CACGAG	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	552, 720
Bst2BI	CACGAG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	4 cut(s)	304, 541, 571, 787
BstAPI	GCANNNNNTGC	2 cut(s)	227, 620
BstC8I	GCNNGC	1 cut(s)	924
BstDEI	CTNAG	7 cut(s)	204, 240, 255, 267, 530, 804, 897
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	23, 265, 277
BstMAI	GTCTC	2 cut(s)	91, 128
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 227, 236, 251, 620
BstNI	CCWGG	1 cut(s)	960
BstSCI	CCNGG	1 cut(s)	958
BstSLI	GKGCMC	2 cut(s)	60, 991
BstV1I	GCAGC	3 cut(s)	214, 233, 408
BstV2I	GAAGAC	2 cut(s)	163, 909
BstXI	CCANNNNNNTGG	1 cut(s)	168
Bsu36I	CCTNAGG	2 cut(s)	804, 897
BsuRI	GGCC	3 cut(s)	145, 335, 809
BtsCI	GGATG	3 cut(s)	23, 265, 277
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	2 cut(s)	131, 936
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	924
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	366, 749, 1010
CsiI	ACCWGGT	1 cut(s)	958
Csp6I	GTAC	3 cut(s)	12, 40, 783
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	3 cut(s)	31, 679, 763
CviQI	GTAC	3 cut(s)	12, 40, 783
DdeI	CTNAG	7 cut(s)	204, 240, 255, 267, 530, 804, 897
DraI	TTTAAA	2 cut(s)	112, 348
DraIII	CACNNNGTG	1 cut(s)	962
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	552, 720
Eco147I	AGGCCT	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	762
Eco47I	GGWCC	3 cut(s)	366, 749, 1010
Eco57I	CTGAAG	1 cut(s)	501
Eco81I	CCTNAGG	2 cut(s)	804, 897
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	1 cut(s)	958
EcoT14I	CCWWGG	2 cut(s)	552, 720
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	552, 720
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	3 cut(s)	34, 682, 766
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	30, 678, 762
Fnu4HI	GCNGC	7 cut(s)	104, 222, 225, 228, 336, 422, 927
FokI	GGATG	3 cut(s)	10, 272, 284
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	7 cut(s)	104, 222, 225, 228, 336, 422, 927
FspBI	CTAG	5 cut(s)	9, 147, 729, 734, 746
GluI	GCNGC	7 cut(s)	104, 222, 225, 228, 336, 422, 927
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	145, 335, 809
Hin1II	CATG	3 cut(s)	34, 682, 766
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	4 cut(s)	375, 675, 742, 1018
HphI	GGTGA	2 cut(s)	608, 696
Hpy166II	GTNNAC	5 cut(s)	58, 544, 916, 976, 989
Hpy188I	TCNGA	3 cut(s)	205, 390, 774
Hpy188III	TCNNGA	1 cut(s)	896
Hpy8I	GTNNAC	5 cut(s)	58, 544, 916, 976, 989
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	100, 325, 665, 917, 961, 1023
HpyCH4III	ACNGT	4 cut(s)	304, 541, 571, 787
HpyCH4IV	ACGT	2 cut(s)	38, 874
HpyCH4V	TGCA	3 cut(s)	58, 424, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 227, 236, 251, 620
HpyF3I	CTNAG	7 cut(s)	204, 240, 255, 267, 530, 804, 897
HpySE526I	ACGT	2 cut(s)	38, 874
Hsp92II	CATG	3 cut(s)	34, 682, 766
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	3 cut(s)	214, 233, 408
LweI	GCATC	2 cut(s)	705, 1029
MabI	ACCWGGT	1 cut(s)	958
MaeI	CTAG	5 cut(s)	9, 147, 729, 734, 746
MaeII	ACGT	2 cut(s)	38, 874
MaeIII	GTNAC	2 cut(s)	298, 787
MbiI	CCGCTC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	168, 287, 914
MhlI	GDGCHC	3 cut(s)	60, 762, 991
MluCI	AATT	8 cut(s)	175, 384, 392, 464, 683, 696, 818, 1063
MroXI	GAANNNNTTC	1 cut(s)	906
MseI	TTAA	6 cut(s)	111, 188, 347, 573, 695, 1025
MslI	CAYNNNNRTG	1 cut(s)	994
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	960
MvaI	CCWGG	1 cut(s)	960
MwoI	GCNNNNNNNGC	5 cut(s)	103, 227, 236, 251, 620
NlaIII	CATG	3 cut(s)	34, 682, 766
NlaIV	GGNNCC	1 cut(s)	1011
PceI	AGGCCT	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	4 cut(s)	375, 675, 742, 1018
Pfl23II	CGTACG	1 cut(s)	39
PkrI	GCNGC	7 cut(s)	105, 223, 226, 229, 337, 423, 928
PpuMI	RGGWCCY	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	1010
Psp6I	CCWGG	1 cut(s)	958
PspGI	CCWGG	1 cut(s)	958
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	1011
PspPI	GGNCC	3 cut(s)	366, 749, 1010
PspPPI	RGGWCCY	1 cut(s)	1010
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	13, 41, 784
RsaNI	GTAC	3 cut(s)	12, 40, 783
RseI	CAYNNNNRTG	1 cut(s)	994
SaqAI	TTAA	6 cut(s)	111, 188, 347, 573, 695, 1025
SatI	GCNGC	7 cut(s)	104, 222, 225, 228, 336, 422, 927
Sau96I	GGNCC	3 cut(s)	366, 749, 1010
ScrFI	CCNGG	1 cut(s)	960
SduI	GDGCHC	3 cut(s)	60, 762, 991
SexAI	ACCWGGT	1 cut(s)	958
SfaNI	GCATC	2 cut(s)	705, 1029
SinI	GGWCC	3 cut(s)	366, 749, 1010
SmiMI	CAYNNNNRTG	1 cut(s)	994
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	8 cut(s)	175, 384, 392, 464, 683, 696, 818, 1063
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	5 cut(s)	104, 224, 336, 493, 927
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	5 cut(s)	9, 147, 729, 734, 746
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	2 cut(s)	552, 720
TaaI	ACNGT	4 cut(s)	304, 541, 571, 787
TaiI	ACGT	2 cut(s)	41, 877
TaqI	TCGA	2 cut(s)	1016, 1044
TasI	AATT	8 cut(s)	175, 384, 392, 464, 683, 696, 818, 1063
TauI	GCSGC	4 cut(s)	106, 227, 338, 929
TfiI	GAWTC	4 cut(s)	375, 675, 742, 1018
Tru1I	TTAA	6 cut(s)	111, 188, 347, 573, 695, 1025
Tru9I	TTAA	6 cut(s)	111, 188, 347, 573, 695, 1025
TscAI	CASTG	2 cut(s)	138, 936
TseI	GCWGC	3 cut(s)	221, 227, 421
TspDTI	ATGAA	3 cut(s)	288, 667, 857
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	138, 936
VneI	GTGCAC	2 cut(s)	56, 987
VpaK11BI	GGWCC	3 cut(s)	366, 749, 1010
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	4 cut(s)	384, 464, 683, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	5 cut(s)	9, 147, 729, 734, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.